Wall clock time and date at job start Tue Mar 31 2020 15:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31817 * 119.12216 * 2 1 4 4 C 1.32314 * 120.81768 * 180.02562 * 3 2 1 5 5 C 1.38626 * 119.10430 * 359.97438 * 4 3 2 6 6 C 1.38573 * 118.39712 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.44450 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47384 * 95.00052 * 7 6 5 9 9 C 1.34774 * 120.00673 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99274 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00690 * 180.02562 * 9 8 7 12 12 C 1.50699 * 109.47400 * 180.02562 * 11 9 8 13 13 C 1.38320 * 119.96630 * 269.72379 * 12 11 9 14 14 C 1.38280 * 120.14137 * 179.76617 * 13 12 11 15 15 C 1.38119 * 120.06462 * 0.51091 * 14 13 12 16 16 C 1.38859 * 119.93050 * 359.74410 * 15 14 13 17 17 O 1.35755 * 120.06449 * 179.97438 * 16 15 14 18 18 C 1.34830 * 117.00143 * 354.48010 * 17 16 15 19 19 H 1.07997 * 119.99848 * 5.06700 * 18 17 16 20 20 C 1.38655 * 119.99429 * 185.05796 * 18 17 16 21 21 N 1.31547 * 120.00658 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99469 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47257 * 90.00292 * 22 20 18 24 24 H 1.48498 * 109.47321 * 210.00257 * 22 20 18 25 25 H 1.48497 * 109.47439 * 330.00413 * 22 20 18 26 26 C 1.38079 * 119.96482 * 89.99953 * 12 11 9 27 27 N 1.31779 * 119.12639 * 180.30022 * 2 1 3 28 28 H 1.08995 * 109.47284 * 89.99998 * 1 2 3 29 29 H 1.09000 * 109.46858 * 210.00028 * 1 2 3 30 30 H 1.09000 * 109.47155 * 329.99785 * 1 2 3 31 31 H 1.07997 * 120.44940 * 180.02562 * 4 3 2 32 32 H 1.08000 * 120.79701 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.47276 * 215.00415 * 7 6 5 34 34 H 1.09001 * 109.47362 * 335.00136 * 7 6 5 35 35 H 0.97007 * 119.99845 * 0.02562 * 8 7 6 36 36 H 1.08999 * 109.46513 * 300.00185 * 11 9 8 37 37 H 1.09001 * 109.47063 * 59.99657 * 11 9 8 38 38 H 1.08004 * 119.93071 * 359.97438 * 13 12 11 39 39 H 1.07995 * 119.96527 * 180.25265 * 14 13 12 40 40 H 1.07996 * 120.03539 * 179.76692 * 15 14 13 41 41 H 0.97001 * 120.00213 * 180.02562 * 21 20 18 42 42 H 1.07993 * 120.03590 * 359.95193 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1907 -0.0005 5 6 4.1809 -0.0001 -0.0005 6 6 3.4713 -1.1903 0.0006 7 6 4.1962 -2.5115 0.0012 8 7 4.3261 -2.9966 1.3774 9 6 4.9443 -4.1687 1.6234 10 8 5.3935 -4.8216 0.7052 11 6 5.0774 -4.6680 3.0390 12 6 5.8024 -5.9892 3.0396 13 6 5.0879 -7.1694 2.9415 14 6 5.7498 -8.3835 2.9369 15 6 7.1265 -8.4214 3.0409 16 6 7.8463 -7.2385 3.1449 17 8 9.1995 -7.2726 3.2478 18 6 9.7746 -8.4871 3.3584 19 1 9.1713 -9.3794 3.2801 20 6 11.1406 -8.5903 3.5725 21 7 11.8755 -7.5034 3.6682 22 14 11.9375 -10.2729 3.7249 23 1 12.3638 -10.7423 2.3821 24 1 13.1219 -10.1809 4.6160 25 1 10.9605 -11.2333 4.2979 26 6 7.1789 -6.0204 3.1439 27 7 2.1484 -1.1511 -0.0060 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 3.9906 2.1375 -0.0001 32 1 5.2609 0.0000 -0.0013 33 1 3.6328 -3.2354 -0.5876 34 1 5.1874 -2.3824 -0.4335 35 1 3.9665 -2.4746 2.1117 36 1 5.6410 -3.9444 3.6279 37 1 4.0861 -4.7969 3.4735 38 1 4.0109 -7.1426 2.8649 39 1 5.1894 -9.3031 2.8560 40 1 7.6427 -9.3700 3.0411 41 1 12.8312 -7.5757 3.8176 42 1 7.7360 -5.0987 3.2242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119721544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:38 Heat of formation + Delta-G solvation = -16.708213 kcal Electronic energy + Delta-G solvation = -25487.869236 eV Core-core repulsion = 21625.769988 eV Total energy + Delta-G solvation = -3862.099248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.20096 -41.10505 -40.35922 -38.22951 -36.59732 -34.57283 -34.34111 -34.11945 -33.37601 -30.91374 -29.83144 -29.16135 -27.71852 -27.09443 -24.46604 -23.40047 -23.17775 -22.65815 -21.52696 -19.53490 -18.88488 -18.73673 -18.27302 -17.46991 -16.84417 -16.77538 -16.56760 -16.18040 -16.11042 -16.00603 -15.96464 -15.48528 -15.01683 -14.77593 -14.51188 -14.35047 -14.04887 -13.86829 -13.85505 -13.55516 -13.48336 -13.19170 -12.96575 -12.76726 -12.46449 -12.38907 -12.21122 -12.09875 -11.92781 -11.89937 -11.19631 -11.05855 -10.79346 -10.45755 -10.34349 -10.21817 -9.62728 -8.96718 -8.46172 -6.14470 -0.25079 -0.03800 0.53535 0.77062 1.34548 1.44162 1.52345 1.63528 2.11379 2.18452 2.69277 2.79648 2.88574 3.07380 3.19358 3.39060 3.45215 3.78821 3.86192 4.08315 4.09301 4.12920 4.30674 4.33799 4.43980 4.46392 4.54185 4.58409 4.62056 4.65097 4.70694 4.75393 4.89681 5.04782 5.07678 5.14101 5.26395 5.32561 5.41324 5.66235 5.74010 5.76609 5.95820 6.03853 6.23955 6.45626 6.98460 7.02738 7.21563 7.80086 8.77284 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026004 B = 0.001969 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.487867 B =14214.722044 C =14965.667690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.302 3.698 3 N -0.534 5.534 4 C 0.153 3.847 5 C -0.211 4.211 6 C 0.152 3.848 7 C 0.174 3.826 8 N -0.712 5.712 9 C 0.520 3.480 10 O -0.572 6.572 11 C -0.089 4.089 12 C -0.026 4.026 13 C -0.181 4.181 14 C -0.075 4.075 15 C -0.247 4.247 16 C 0.111 3.889 17 O -0.234 6.234 18 C -0.414 4.414 19 H 0.100 0.900 20 C -0.025 4.025 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.265 1.265 24 H -0.269 1.269 25 H -0.253 1.253 26 C -0.191 4.191 27 N -0.527 5.527 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.205 0.795 32 H 0.174 0.826 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.415 0.585 36 H 0.125 0.875 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.117 0.883 41 H 0.272 0.728 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.122 16.256 -4.004 27.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.036 3.964 3 N -0.249 5.249 4 C -0.013 4.013 5 C -0.233 4.233 6 C 0.006 3.994 7 C 0.050 3.950 8 N -0.366 5.366 9 C 0.308 3.692 10 O -0.450 6.450 11 C -0.129 4.129 12 C -0.027 4.027 13 C -0.199 4.199 14 C -0.092 4.092 15 C -0.266 4.266 16 C 0.061 3.939 17 O -0.141 6.141 18 C -0.490 4.490 19 H 0.117 0.883 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.190 1.190 24 H -0.194 1.194 25 H -0.176 1.176 26 C -0.210 4.210 27 N -0.243 5.243 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.221 0.779 32 H 0.192 0.808 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.251 0.749 36 H 0.143 0.857 37 H 0.160 0.840 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.135 0.865 41 H 0.081 0.919 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -22.436 16.025 -4.646 27.960 hybrid contribution 1.745 -0.490 0.132 1.817 sum -20.691 15.535 -4.514 26.265 Atomic orbital electron populations 1.20673 0.83874 1.04970 1.04744 1.23835 0.99501 0.83017 0.90094 1.68363 1.11346 1.30511 1.14712 1.23903 0.89120 1.00086 0.88193 1.23101 1.04464 0.93258 1.02452 1.21589 0.89756 0.95619 0.92438 1.20040 0.99746 0.90390 0.84867 1.45684 1.59788 1.22425 1.08703 1.20900 0.76438 0.80175 0.91695 1.90775 1.48869 1.57584 1.47813 1.20684 1.04374 0.94449 0.93353 1.19170 0.91192 0.95480 0.96834 1.20981 1.00363 0.91359 1.07230 1.21127 0.92493 0.99206 0.96419 1.21296 0.95939 0.97490 1.11862 1.19888 0.84135 0.95361 0.94522 1.83934 1.15742 1.32677 1.81717 1.21814 0.92539 0.83050 1.51569 0.88291 1.26599 0.95571 1.04116 0.95885 1.70182 1.06982 1.30647 1.48155 0.84580 0.77933 0.74658 0.78971 1.18973 1.19373 1.17645 1.20227 0.94573 0.94921 1.11310 1.68113 1.09994 1.31431 1.14715 0.88697 0.89078 0.88549 0.77879 0.80846 0.90703 0.88980 0.74884 0.85739 0.83986 0.83601 0.83793 0.86504 0.91867 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.32 71.24 0.74 -0.14 16 2 C 0.30 4.99 7.64 138.75 1.06 6.05 16 3 N -0.53 -8.49 10.33 -187.83 -1.94 -10.43 16 4 C 0.15 1.71 11.31 84.71 0.96 2.67 16 5 C -0.21 -2.45 9.84 22.44 0.22 -2.23 16 6 C 0.15 2.46 6.19 42.56 0.26 2.73 16 7 C 0.17 3.21 6.03 85.63 0.52 3.73 16 8 N -0.71 -12.92 5.55 -466.79 -2.59 -15.51 16 9 C 0.52 13.55 7.82 87.66 0.69 14.23 16 10 O -0.57 -21.41 16.03 -3.05 -0.05 -21.46 16 11 C -0.09 -2.02 5.83 29.10 0.17 -1.85 16 12 C -0.03 -0.91 4.37 -19.88 -0.09 -0.99 16 13 C -0.18 -5.97 9.70 22.30 0.22 -5.75 16 14 C -0.07 -2.74 10.04 22.25 0.22 -2.51 16 15 C -0.25 -11.43 9.17 22.39 0.21 -11.23 16 16 C 0.11 5.84 6.65 22.58 0.15 5.99 16 17 O -0.23 -14.66 9.76 -22.80 -0.22 -14.89 16 18 C -0.41 -24.97 9.49 67.92 0.64 -24.33 16 19 H 0.10 5.52 5.20 -2.91 -0.02 5.50 16 20 C -0.02 -1.44 5.49 84.84 0.47 -0.97 16 21 N -0.92 -57.77 13.67 21.61 0.30 -57.48 16 22 Si 1.02 44.04 29.55 68.60 2.03 46.06 16 23 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 26 C -0.19 -8.55 9.65 22.39 0.22 -8.33 16 27 N -0.53 -9.75 10.27 -176.03 -1.81 -11.55 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.20 0.78 8.06 -2.91 -0.02 0.76 16 32 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.09 1.69 8.06 -2.39 -0.02 1.67 16 35 H 0.41 5.17 8.46 -92.70 -0.78 4.39 16 36 H 0.12 2.29 8.08 -2.39 -0.02 2.27 16 37 H 0.14 2.07 8.08 -2.39 -0.02 2.05 16 38 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 39 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 40 H 0.12 5.48 5.64 -2.91 -0.02 5.47 16 41 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 42 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -86.18 370.72 2.64 -83.54 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.28 Total: 24.65 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 6.64 Total: -22.93 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -6.04 Total: -94.97 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -0.27 Total: -36.35 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -86.18 2.64 -83.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119721544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.833 kcal (2) G-P(sol) polarization free energy of solvation -86.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds