Wall clock time and date at job start Tue Mar 31 2020 15:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30843 * 125.90095 * 2 1 4 4 N 1.40080 * 108.20533 * 180.02562 * 3 2 1 5 5 C 1.46502 * 126.03626 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47176 * 269.97512 * 5 4 3 7 7 H 1.08003 * 119.99880 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00094 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99984 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99805 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47399 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47027 * 119.99508 * 10 8 6 13 13 H 1.48499 * 109.47006 * 239.99256 * 10 8 6 14 14 C 1.34950 * 107.92794 * 0.02562 * 4 3 2 15 15 C 1.50703 * 126.12738 * 179.97438 * 14 4 3 16 16 C 1.35315 * 107.74654 * 0.22852 * 14 4 3 17 17 S 1.76196 * 126.04252 * 179.77093 * 16 14 4 18 18 O 1.42098 * 106.40241 * 203.54062 * 17 16 14 19 19 O 1.42106 * 106.40236 * 336.45629 * 17 16 14 20 20 N 1.65589 * 107.21929 * 89.99677 * 17 16 14 21 21 C 1.46926 * 120.63453 * 269.72149 * 20 17 16 22 22 C 1.53624 * 108.54521 * 126.37010 * 21 20 17 23 23 C 1.53042 * 109.24341 * 54.85659 * 22 21 20 24 24 C 1.53042 * 109.53639 * 298.51301 * 23 22 21 25 25 C 1.46931 * 120.63068 * 90.00524 * 20 17 16 26 26 H 1.08993 * 109.47448 * 90.01700 * 1 2 3 27 27 H 1.09002 * 109.47103 * 210.01919 * 1 2 3 28 28 H 1.08998 * 109.46587 * 330.01923 * 1 2 3 29 29 H 1.08996 * 109.47196 * 29.97561 * 5 4 3 30 30 H 1.09001 * 109.47097 * 149.97672 * 5 4 3 31 31 H 0.97003 * 120.00071 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.47152 * 90.02651 * 15 14 4 33 33 H 1.09001 * 109.46980 * 330.02751 * 15 14 4 34 34 H 1.09004 * 109.47113 * 210.02732 * 15 14 4 35 35 H 1.08997 * 109.58863 * 246.20453 * 21 20 17 36 36 H 1.09005 * 109.58298 * 6.62494 * 21 20 17 37 37 H 1.08999 * 109.63141 * 294.86295 * 22 21 20 38 38 H 1.09000 * 109.45515 * 174.74460 * 22 21 20 39 39 H 1.09001 * 109.45723 * 178.49081 * 23 22 21 40 40 H 1.08997 * 109.45485 * 58.53330 * 23 22 21 41 41 H 1.08994 * 109.49810 * 301.41455 * 24 23 22 42 42 H 1.08998 * 109.49144 * 181.31464 * 24 23 22 43 43 H 1.09004 * 109.58369 * 353.36592 * 25 20 17 44 44 H 1.08995 * 109.59056 * 113.79705 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 5.1950 1.7984 -1.4210 7 1 4.6294 1.3831 -2.2420 8 6 6.2882 2.5999 -1.6726 9 7 6.9772 3.1052 -0.6728 10 14 6.7898 2.9694 -3.4337 11 1 5.8583 2.2869 -4.3673 12 1 6.7383 4.4353 -3.6658 13 1 8.1720 2.4795 -3.6678 14 6 3.6142 -0.7154 -0.0015 15 6 4.8350 -1.5990 -0.0030 16 6 2.3271 -1.1331 -0.0067 17 16 1.7808 -2.8082 -0.0156 18 8 0.4697 -2.7997 -0.5633 19 8 2.8459 -3.5747 -0.5609 20 7 1.6249 -3.2814 1.5636 21 6 2.7545 -3.8929 2.2769 22 6 2.9943 -3.1086 3.5759 23 6 1.6946 -3.0592 4.3825 24 6 0.6175 -2.3329 3.5736 25 6 0.3524 -3.1034 2.2763 26 1 -0.3634 -0.0003 -1.0276 27 1 -0.3633 -0.8898 0.5141 28 1 -0.3632 0.8902 0.5135 29 1 4.5564 2.4330 0.5139 30 1 5.6093 0.9979 0.5134 31 1 7.7462 3.6694 -0.8499 32 1 5.1298 -1.8131 1.0244 33 1 5.6510 -1.0905 -0.5166 34 1 4.6074 -2.5325 -0.5177 35 1 2.5195 -4.9310 2.5117 36 1 3.6470 -3.8503 1.6526 37 1 3.3133 -2.0939 3.3375 38 1 3.7677 -3.6048 4.1621 39 1 1.8677 -2.5264 5.3176 40 1 1.3631 -4.0746 4.5993 41 1 0.9589 -1.3256 3.3352 42 1 -0.3009 -2.2776 4.1580 43 1 -0.3405 -2.5396 1.6516 44 1 -0.0744 -4.0784 2.5111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124669114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:20 Heat of formation + Delta-G solvation = -21.670209 kcal Electronic energy + Delta-G solvation = -27528.977218 eV Core-core repulsion = 23802.106753 eV Total energy + Delta-G solvation = -3726.870465 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.74712 -38.45269 -37.05226 -35.54054 -34.20782 -32.65755 -32.48266 -31.48647 -31.15847 -29.15974 -26.86460 -26.08657 -24.54814 -23.38945 -23.06738 -20.84328 -20.20005 -19.06088 -18.63323 -17.64004 -16.90772 -16.51085 -15.79928 -15.24004 -14.83785 -14.64613 -14.44693 -14.39116 -14.29911 -13.83277 -13.60808 -13.38742 -13.05367 -13.00832 -12.67440 -12.53026 -12.29349 -11.95849 -11.88886 -11.86089 -11.71387 -11.66661 -11.35082 -11.34442 -11.17792 -11.10645 -10.95011 -10.79351 -10.71601 -10.54779 -10.36196 -9.96232 -9.89661 -9.03025 -8.76871 -8.57434 -8.34697 -6.39288 -4.47493 0.77030 2.23674 2.80275 3.13996 3.21712 3.23167 3.30594 3.41380 4.10456 4.20420 4.48779 4.57217 4.75856 4.76693 4.94727 4.97710 5.01691 5.13248 5.19316 5.24622 5.37936 5.48204 5.59771 5.60515 5.63415 5.65772 5.80695 5.83899 5.89478 5.92687 5.96530 5.98022 6.11592 6.19186 6.24466 6.40536 6.41536 6.63353 6.78268 6.84281 7.13066 7.51197 7.70755 7.72923 8.28120 8.59043 9.20271 10.68933 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017775 B = 0.004030 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.837041 B = 6946.471430 C = 7159.936100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.135 3.865 3 N -0.291 5.291 4 N -0.311 5.311 5 C 0.248 3.752 6 C -0.543 4.543 7 H 0.066 0.934 8 C 0.068 3.932 9 N -0.889 5.889 10 Si 0.908 3.092 11 H -0.270 1.270 12 H -0.279 1.279 13 H -0.279 1.279 14 C 0.209 3.791 15 C -0.134 4.134 16 C -0.838 4.838 17 S 2.725 3.275 18 O -0.966 6.966 19 O -0.968 6.968 20 N -1.001 6.001 21 C 0.122 3.878 22 C -0.137 4.137 23 C -0.115 4.115 24 C -0.137 4.137 25 C 0.123 3.877 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.269 0.731 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.571 -13.611 10.131 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.034 4.034 3 N -0.112 5.112 4 N -0.085 5.085 5 C 0.131 3.869 6 C -0.581 4.581 7 H 0.085 0.915 8 C -0.136 4.136 9 N -0.526 5.526 10 Si 0.735 3.265 11 H -0.194 1.194 12 H -0.205 1.205 13 H -0.205 1.205 14 C 0.069 3.931 15 C -0.192 4.192 16 C -0.939 4.939 17 S 2.818 3.182 18 O -0.956 6.956 19 O -0.958 6.958 20 N -0.838 5.838 21 C -0.003 4.003 22 C -0.176 4.176 23 C -0.152 4.152 24 C -0.176 4.176 25 C -0.003 4.003 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.133 0.867 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.395 -12.549 9.451 18.305 hybrid contribution 0.727 0.394 -0.519 0.976 sum -8.668 -12.155 8.932 17.397 Atomic orbital electron populations 1.20338 0.86695 1.02904 1.03806 1.21650 0.96117 0.88931 0.96744 1.77337 0.87248 1.22324 1.24253 1.49857 1.06414 1.04391 1.47872 1.19890 0.77640 0.89774 0.99583 1.21303 1.13418 1.32412 0.90970 0.91538 1.24925 0.95511 0.94726 0.98417 1.69919 1.18912 1.32681 1.31123 0.86260 0.78531 0.78382 0.83332 1.19449 1.20501 1.20457 1.20814 0.94800 0.85917 0.91569 1.21115 0.94189 0.99908 1.03962 1.30660 1.00162 1.22926 1.40194 1.00636 0.73019 0.72934 0.71648 1.93509 1.38602 1.87686 1.75810 1.93466 1.56799 1.69499 1.76059 1.57859 1.18601 1.75627 1.31696 1.21493 0.88584 0.96449 0.93809 1.22004 0.97771 1.01523 0.96344 1.21434 0.95171 1.00550 0.98079 1.21931 0.99291 1.00100 0.96312 1.21410 0.84383 1.00642 0.93832 0.89870 0.90385 0.90832 0.92480 0.92519 0.92109 0.90000 0.88754 0.86747 0.91161 0.89095 0.91236 0.90960 0.92010 0.91946 0.91168 0.90992 0.89198 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 9.52 36.00 0.34 -0.83 16 2 C 0.13 2.59 7.21 -82.40 -0.59 1.99 16 3 N -0.29 -6.55 12.58 33.67 0.42 -6.13 16 4 N -0.31 -7.10 3.60 -58.31 -0.21 -7.31 16 5 C 0.25 6.18 5.82 -5.19 -0.03 6.15 16 6 C -0.54 -14.71 9.39 -34.44 -0.32 -15.03 16 7 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 8 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 9 N -0.89 -24.43 13.29 55.43 0.74 -23.69 16 10 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 C 0.21 4.14 6.92 -82.26 -0.57 3.58 16 15 C -0.13 -2.23 9.58 36.01 0.34 -1.89 16 16 C -0.84 -15.40 6.17 -40.01 -0.25 -15.65 16 17 S 2.73 42.76 5.66 -107.50 -0.61 42.15 16 18 O -0.97 -16.40 14.65 -57.17 -0.84 -17.23 16 19 O -0.97 -16.63 13.96 -57.17 -0.80 -17.43 16 20 N -1.00 -11.90 3.28 -113.27 -0.37 -12.27 16 21 C 0.12 1.23 6.41 -3.49 -0.02 1.21 16 22 C -0.14 -1.25 6.10 -26.39 -0.16 -1.41 16 23 C -0.11 -0.93 5.88 -26.69 -0.16 -1.09 16 24 C -0.14 -1.21 6.08 -26.61 -0.16 -1.37 16 25 C 0.12 1.20 6.38 -3.71 -0.02 1.18 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.08 1.00 5.43 -51.93 -0.28 0.72 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.06 1.37 7.66 -51.93 -0.40 0.98 16 31 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.09 1.68 7.72 -51.93 -0.40 1.28 16 34 H 0.11 1.84 5.54 -51.93 -0.29 1.55 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.95 7.12 -51.93 -0.37 0.58 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.90 5.65 -51.93 -0.29 0.60 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 361.71 15.07 5.45 5.45 Total: -1.00 -32.01 361.71 -9.58 -41.60 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.65 Total: 0.44 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -1.70 Total: -21.44 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.58 Total: -49.40 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -1.64 Total: -34.66 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 42.76 SS G_CDS: -0.61 Total: 42.15 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.01 -9.58 -41.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124669114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.928 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds