Wall clock time and date at job start Tue Mar 31 2020 15:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30843 * 125.90095 * 2 1 4 4 N 1.40080 * 108.20533 * 180.02562 * 3 2 1 5 5 C 1.46502 * 126.03626 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47176 * 269.97512 * 5 4 3 7 7 H 1.08003 * 119.99880 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00094 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99984 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99805 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47399 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47027 * 119.99508 * 10 8 6 13 13 H 1.48499 * 109.47006 * 239.99256 * 10 8 6 14 14 C 1.34950 * 107.92794 * 0.02562 * 4 3 2 15 15 C 1.50703 * 126.12738 * 179.97438 * 14 4 3 16 16 C 1.35315 * 107.74654 * 0.22852 * 14 4 3 17 17 S 1.76196 * 126.04252 * 179.77093 * 16 14 4 18 18 O 1.42098 * 106.40241 * 203.54062 * 17 16 14 19 19 O 1.42106 * 106.40236 * 336.45629 * 17 16 14 20 20 N 1.65589 * 107.21929 * 89.99677 * 17 16 14 21 21 C 1.46926 * 120.63453 * 269.72149 * 20 17 16 22 22 C 1.53624 * 108.54521 * 126.37010 * 21 20 17 23 23 C 1.53042 * 109.24341 * 54.85659 * 22 21 20 24 24 C 1.53042 * 109.53639 * 298.51301 * 23 22 21 25 25 C 1.46931 * 120.63068 * 90.00524 * 20 17 16 26 26 H 1.08993 * 109.47448 * 90.01700 * 1 2 3 27 27 H 1.09002 * 109.47103 * 210.01919 * 1 2 3 28 28 H 1.08998 * 109.46587 * 330.01923 * 1 2 3 29 29 H 1.08996 * 109.47196 * 29.97561 * 5 4 3 30 30 H 1.09001 * 109.47097 * 149.97672 * 5 4 3 31 31 H 0.97003 * 120.00071 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.47152 * 90.02651 * 15 14 4 33 33 H 1.09001 * 109.46980 * 330.02751 * 15 14 4 34 34 H 1.09004 * 109.47113 * 210.02732 * 15 14 4 35 35 H 1.08997 * 109.58863 * 246.20453 * 21 20 17 36 36 H 1.09005 * 109.58298 * 6.62494 * 21 20 17 37 37 H 1.08999 * 109.63141 * 294.86295 * 22 21 20 38 38 H 1.09000 * 109.45515 * 174.74460 * 22 21 20 39 39 H 1.09001 * 109.45723 * 178.49081 * 23 22 21 40 40 H 1.08997 * 109.45485 * 58.53330 * 23 22 21 41 41 H 1.08994 * 109.49810 * 301.41455 * 24 23 22 42 42 H 1.08998 * 109.49144 * 181.31464 * 24 23 22 43 43 H 1.09004 * 109.58369 * 353.36592 * 25 20 17 44 44 H 1.08995 * 109.59056 * 113.79705 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 5.1950 1.7984 -1.4210 7 1 4.6294 1.3831 -2.2420 8 6 6.2882 2.5999 -1.6726 9 7 6.9772 3.1052 -0.6728 10 14 6.7898 2.9694 -3.4337 11 1 5.8583 2.2869 -4.3673 12 1 6.7383 4.4353 -3.6658 13 1 8.1720 2.4795 -3.6678 14 6 3.6142 -0.7154 -0.0015 15 6 4.8350 -1.5990 -0.0030 16 6 2.3271 -1.1331 -0.0067 17 16 1.7808 -2.8082 -0.0156 18 8 0.4697 -2.7997 -0.5633 19 8 2.8459 -3.5747 -0.5609 20 7 1.6249 -3.2814 1.5636 21 6 2.7545 -3.8929 2.2769 22 6 2.9943 -3.1086 3.5759 23 6 1.6946 -3.0592 4.3825 24 6 0.6175 -2.3329 3.5736 25 6 0.3524 -3.1034 2.2763 26 1 -0.3634 -0.0003 -1.0276 27 1 -0.3633 -0.8898 0.5141 28 1 -0.3632 0.8902 0.5135 29 1 4.5564 2.4330 0.5139 30 1 5.6093 0.9979 0.5134 31 1 7.7462 3.6694 -0.8499 32 1 5.1298 -1.8131 1.0244 33 1 5.6510 -1.0905 -0.5166 34 1 4.6074 -2.5325 -0.5177 35 1 2.5195 -4.9310 2.5117 36 1 3.6470 -3.8503 1.6526 37 1 3.3133 -2.0939 3.3375 38 1 3.7677 -3.6048 4.1621 39 1 1.8677 -2.5264 5.3176 40 1 1.3631 -4.0746 4.5993 41 1 0.9589 -1.3256 3.3352 42 1 -0.3009 -2.2776 4.1580 43 1 -0.3405 -2.5396 1.6516 44 1 -0.0744 -4.0784 2.5111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124669114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:19 Heat of formation + Delta-G solvation = -42.643372 kcal Electronic energy + Delta-G solvation = -27529.886683 eV Core-core repulsion = 23802.106753 eV Total energy + Delta-G solvation = -3727.779930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.31600 -39.23487 -38.35832 -36.85344 -36.05115 -34.40970 -33.29067 -33.06581 -31.91016 -30.77072 -28.35015 -27.82049 -25.35910 -24.91777 -24.13552 -22.17888 -21.17753 -20.61428 -19.71813 -18.93880 -18.80313 -17.98820 -17.02724 -16.77303 -16.40204 -16.04093 -15.47115 -15.44551 -15.18306 -14.91469 -14.69990 -14.58594 -14.46803 -14.40730 -14.15557 -13.77047 -13.59070 -13.43840 -13.40285 -13.06476 -12.98322 -12.90595 -12.88764 -12.82776 -12.63632 -12.46636 -12.17359 -12.08409 -11.88100 -11.78453 -11.46762 -11.39476 -11.27994 -10.82441 -10.16565 -10.06382 -9.82924 -8.44901 -6.61724 -0.45818 0.70712 1.31168 1.31558 1.34191 1.45381 1.66670 2.20929 2.27664 2.83486 2.87406 3.22440 3.54924 3.73251 3.77281 4.03336 4.06674 4.07925 4.23173 4.35789 4.37932 4.50689 4.54734 4.55905 4.63657 4.71300 4.75076 4.77713 4.88903 4.91133 4.99082 5.01950 5.05726 5.12848 5.20163 5.27566 5.29535 5.41394 5.42720 5.56123 5.64270 5.67347 5.75950 6.00482 6.47793 6.70283 7.10200 8.63354 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017775 B = 0.004030 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.837041 B = 6946.471430 C = 7159.936100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.136 3.864 3 N -0.338 5.338 4 N -0.338 5.338 5 C 0.265 3.735 6 C -0.562 4.562 7 H 0.047 0.953 8 C 0.028 3.972 9 N -0.913 5.913 10 Si 0.971 3.029 11 H -0.276 1.276 12 H -0.272 1.272 13 H -0.264 1.264 14 C 0.199 3.801 15 C -0.131 4.131 16 C -0.842 4.842 17 S 2.743 3.257 18 O -0.977 6.977 19 O -0.982 6.982 20 N -0.992 5.992 21 C 0.113 3.887 22 C -0.137 4.137 23 C -0.114 4.114 24 C -0.136 4.136 25 C 0.113 3.887 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.029 0.971 30 H 0.057 0.943 31 H 0.276 0.724 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.046 0.954 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.374 -15.647 10.873 21.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.033 4.033 3 N -0.159 5.159 4 N -0.113 5.113 5 C 0.147 3.853 6 C -0.600 4.600 7 H 0.066 0.934 8 C -0.174 4.174 9 N -0.551 5.551 10 Si 0.794 3.206 11 H -0.201 1.201 12 H -0.197 1.197 13 H -0.188 1.188 14 C 0.061 3.939 15 C -0.189 4.189 16 C -0.940 4.940 17 S 2.832 3.168 18 O -0.967 6.967 19 O -0.973 6.973 20 N -0.832 5.832 21 C -0.012 4.012 22 C -0.176 4.176 23 C -0.151 4.151 24 C -0.175 4.175 25 C -0.011 4.011 26 H 0.107 0.893 27 H 0.118 0.882 28 H 0.107 0.893 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.131 0.869 33 H 0.098 0.902 34 H 0.141 0.859 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.193 -14.567 10.197 20.496 hybrid contribution 0.882 0.920 -0.656 1.434 sum -9.310 -13.647 9.542 19.078 Atomic orbital electron populations 1.20555 0.83844 1.04839 1.04711 1.22377 0.97838 0.88456 0.94599 1.77265 0.87500 1.24318 1.26774 1.49635 1.06046 1.05193 1.50447 1.19412 0.78609 0.89127 0.98173 1.21411 1.13876 1.33172 0.91495 0.93443 1.25694 0.95204 0.94174 1.02314 1.69985 1.19268 1.32896 1.32926 0.85319 0.78534 0.78335 0.78391 1.20087 1.19734 1.18842 1.21416 0.96587 0.85106 0.90809 1.21220 0.92526 0.99262 1.05894 1.31252 0.99422 1.24594 1.38752 1.00219 0.72301 0.71665 0.72650 1.93485 1.38857 1.87412 1.76954 1.93438 1.57449 1.69110 1.77263 1.57638 1.20086 1.74806 1.30676 1.21780 0.87772 0.97846 0.93789 1.22011 0.99050 1.00184 0.96354 1.21456 0.94255 1.01615 0.97799 1.21934 1.00575 0.98709 0.96291 1.21718 0.83254 1.02310 0.93849 0.89299 0.88162 0.89269 0.95280 0.92514 0.91490 0.86896 0.90248 0.85906 0.88430 0.89678 0.93667 0.89034 0.91618 0.89991 0.93541 0.88786 0.89492 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.35 9.52 71.24 0.68 -1.68 16 2 C 0.14 5.29 7.21 43.10 0.31 5.60 16 3 N -0.34 -15.80 12.58 -47.38 -0.60 -16.40 16 4 N -0.34 -16.13 3.60 -338.40 -1.22 -17.35 16 5 C 0.27 13.90 5.82 85.63 0.50 14.40 16 6 C -0.56 -31.60 9.39 25.60 0.24 -31.36 16 7 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 8 C 0.03 1.53 5.46 84.66 0.46 1.99 16 9 N -0.91 -50.94 13.29 21.45 0.28 -50.65 16 10 Si 0.97 43.17 29.54 68.60 2.03 45.19 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 14 C 0.20 8.07 6.92 41.41 0.29 8.36 16 15 C -0.13 -4.42 9.58 71.24 0.68 -3.73 16 16 C -0.84 -31.08 6.17 21.99 0.14 -30.94 16 17 S 2.74 82.62 5.66 -56.49 -0.32 82.30 16 18 O -0.98 -31.59 14.65 -128.00 -1.88 -33.47 16 19 O -0.98 -32.58 13.96 -128.00 -1.79 -34.37 16 20 N -0.99 -21.38 3.28 -512.26 -1.68 -23.07 16 21 C 0.11 1.97 6.41 86.51 0.55 2.53 16 22 C -0.14 -2.18 6.10 30.82 0.19 -1.99 16 23 C -0.11 -1.51 5.88 30.62 0.18 -1.33 16 24 C -0.14 -2.06 6.08 30.67 0.19 -1.88 16 25 C 0.11 1.89 6.38 86.36 0.55 2.44 16 26 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.10 2.41 5.43 -2.39 -0.01 2.40 16 28 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.06 2.90 7.66 -2.39 -0.02 2.88 16 31 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 32 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 33 H 0.08 2.91 7.72 -2.39 -0.02 2.89 16 34 H 0.12 3.91 5.54 -2.38 -0.01 3.90 16 35 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.60 7.12 -2.38 -0.02 1.58 16 37 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.09 1.51 5.65 -2.39 -0.01 1.50 16 44 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -70.64 361.71 0.79 -69.85 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 1.00 Total: 15.56 kcal Atomic # 6 Polarization: -42.55 SS G_CDS: 4.95 Total: -37.60 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -3.21 Total: -107.46 kcal Atomic # 8 Polarization: -64.17 SS G_CDS: -3.66 Total: -67.84 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: 82.62 SS G_CDS: -0.32 Total: 82.30 kcal Total: -70.64 0.79 -69.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124669114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.205 kcal (2) G-P(sol) polarization free energy of solvation -70.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds