Wall clock time and date at job start Tue Mar 31 2020 14:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38813 * 119.99128 * 2 1 4 4 C 1.38570 * 118.03608 * 179.72948 * 3 2 1 5 5 C 1.39478 * 117.90739 * 0.52804 * 4 3 2 6 6 N 1.39122 * 120.16080 * 179.76030 * 5 4 3 7 7 C 1.39790 * 119.99982 * 352.15901 * 6 5 4 8 8 C 1.39040 * 120.00564 * 138.04174 * 7 6 5 9 9 C 1.38197 * 120.23298 * 180.02562 * 8 7 6 10 10 C 1.38026 * 120.23412 * 359.74296 * 9 8 7 11 11 C 1.39627 * 119.99346 * 0.51395 * 10 9 8 12 12 C 1.47751 * 120.11007 * 179.76687 * 11 10 9 13 13 O 1.21466 * 119.99667 * 179.72344 * 12 11 10 14 14 O 1.34705 * 119.99867 * 359.71983 * 12 11 10 15 15 C 1.45202 * 116.99798 * 180.02562 * 14 12 11 16 16 H 1.09003 * 109.47086 * 329.99970 * 15 14 12 17 17 C 1.52999 * 109.47150 * 89.99666 * 15 14 12 18 18 C 1.50698 * 109.47297 * 210.00167 * 15 14 12 19 19 H 1.08003 * 119.99735 * 359.97438 * 18 15 14 20 20 C 1.37879 * 120.00026 * 180.02562 * 18 15 14 21 21 N 1.31511 * 120.00114 * 359.97438 * 20 18 15 22 22 Si 1.86801 * 119.99838 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.47039 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47100 * 119.99716 * 22 20 18 25 25 H 1.48494 * 109.47089 * 239.99674 * 22 20 18 26 26 C 1.38633 * 120.00008 * 318.06512 * 7 6 5 27 27 N 1.32508 * 119.68350 * 359.48844 * 5 4 3 28 28 N 1.28345 * 122.06669 * 0.24641 * 27 5 4 29 29 H 1.08997 * 109.47350 * 269.97609 * 1 2 3 30 30 H 1.09008 * 109.47296 * 29.97322 * 1 2 3 31 31 H 1.08999 * 109.47594 * 149.97548 * 1 2 3 32 32 H 1.07995 * 120.98345 * 0.02562 * 3 2 1 33 33 H 1.08004 * 121.04577 * 180.28983 * 4 3 2 34 34 H 0.96994 * 120.00476 * 172.15384 * 6 5 4 35 35 H 1.08006 * 119.88014 * 0.04641 * 8 7 6 36 36 H 1.07999 * 119.88783 * 179.97438 * 9 8 7 37 37 H 1.07995 * 120.00364 * 180.25200 * 10 9 8 38 38 H 1.08994 * 109.47450 * 300.00369 * 17 15 14 39 39 H 1.09004 * 109.47299 * 179.97438 * 17 15 14 40 40 H 1.09003 * 109.46878 * 60.00177 * 17 15 14 41 41 H 0.96998 * 119.99910 * 180.02562 * 21 20 18 42 42 H 1.07997 * 120.11453 * 359.95258 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.2023 0.0000 4 6 3.5857 1.1550 0.0058 5 6 4.1961 -0.0991 -0.0001 6 7 5.5836 -0.2012 0.0002 7 6 6.3688 0.9444 -0.1587 8 6 7.5076 1.1203 0.6194 9 6 8.2869 2.2513 0.4666 10 6 7.9432 3.2118 -0.4632 11 6 6.7986 3.0476 -1.2459 12 6 6.4254 4.0765 -2.2383 13 8 5.4320 3.9292 -2.9216 14 8 7.1867 5.1780 -2.3852 15 6 6.7595 6.1470 -3.3787 16 1 6.2352 5.6337 -4.1849 17 6 5.8214 7.1652 -2.7276 18 6 7.9646 6.8591 -3.9367 19 1 8.9529 6.6089 -3.5800 20 6 7.8056 7.8309 -4.9018 21 7 6.6022 8.1359 -5.3358 22 14 9.2995 8.7141 -5.5929 23 1 10.5282 8.1905 -4.9440 24 1 9.3772 8.4833 -7.0579 25 1 9.1806 10.1702 -5.3270 26 6 6.0117 1.9056 -1.0917 27 7 3.4482 -1.1929 -0.0006 28 7 2.1658 -1.1415 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8903 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6769 2.1466 0.0004 33 1 4.1739 2.0608 0.0107 34 1 6.0062 -1.0672 0.1108 35 1 7.7843 0.3702 1.3455 36 1 9.1701 2.3824 1.0741 37 1 8.5571 4.0922 -0.5824 38 1 4.9497 6.6502 -2.3240 39 1 5.5010 7.8929 -3.4733 40 1 6.3456 7.6785 -1.9214 41 1 6.4904 8.8193 -6.0150 42 1 5.1277 1.7708 -1.6974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131368150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:05 Heat of formation + Delta-G solvation = 3.077653 kcal Electronic energy + Delta-G solvation = -26463.760988 eV Core-core repulsion = 22602.519720 eV Total energy + Delta-G solvation = -3861.241268 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.39943 -40.12539 -38.98273 -36.41523 -35.75725 -33.89113 -33.32910 -32.44368 -31.28846 -30.07765 -29.43970 -27.51408 -25.40971 -25.09322 -24.14105 -23.33331 -22.01069 -21.51513 -19.89926 -18.52559 -18.17800 -17.15197 -16.63439 -16.55642 -16.07723 -15.68526 -15.52166 -15.19476 -15.10105 -14.86506 -14.47505 -14.11712 -13.94622 -13.58632 -13.28387 -13.08127 -12.85178 -12.52765 -12.31926 -12.03317 -11.99475 -11.68247 -11.45616 -11.29691 -11.26547 -11.11935 -10.90127 -10.42230 -10.33814 -10.33543 -9.86748 -9.79967 -9.63250 -9.44593 -9.18051 -8.96876 -8.55184 -7.98642 -6.23944 -4.31042 0.60162 0.65174 0.80404 1.26561 2.51683 2.88623 3.20130 3.26371 3.30626 3.41206 3.48938 3.79204 4.03323 4.27789 4.37836 4.42471 4.49684 4.66136 4.75665 4.85006 5.09100 5.10252 5.12975 5.21515 5.25749 5.30995 5.39236 5.50766 5.65041 5.70095 5.82693 5.95253 6.02454 6.21643 6.27791 6.43631 6.56862 6.81644 6.82156 6.83675 7.05465 7.12946 7.52558 7.65125 7.84876 8.06468 8.51541 8.62086 8.80110 9.34580 10.83610 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.016598 B = 0.002741 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.534556 B =10213.382392 C =11529.670347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.023 3.977 3 C -0.077 4.077 4 C -0.166 4.166 5 C 0.328 3.672 6 N -0.654 5.654 7 C 0.143 3.857 8 C -0.117 4.117 9 C -0.105 4.105 10 C -0.075 4.075 11 C -0.084 4.084 12 C 0.494 3.506 13 O -0.514 6.514 14 O -0.348 6.348 15 C 0.216 3.784 16 H 0.048 0.952 17 C -0.155 4.155 18 C -0.521 4.521 19 H 0.070 0.930 20 C 0.062 3.938 21 N -0.888 5.888 22 Si 0.912 3.088 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.281 1.281 26 C -0.096 4.096 27 N -0.297 5.297 28 N -0.209 5.209 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.420 0.580 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.147 0.853 38 H 0.016 0.984 39 H 0.100 0.900 40 H 0.038 0.962 41 H 0.266 0.734 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.073 -13.634 14.307 20.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.106 4.106 4 C -0.198 4.198 5 C 0.089 3.911 6 N -0.282 5.282 7 C 0.048 3.952 8 C -0.138 4.138 9 C -0.124 4.124 10 C -0.094 4.094 11 C -0.086 4.086 12 C 0.338 3.662 13 O -0.405 6.405 14 O -0.264 6.264 15 C 0.163 3.837 16 H 0.065 0.935 17 C -0.213 4.213 18 C -0.559 4.559 19 H 0.088 0.912 20 C -0.140 4.140 21 N -0.526 5.526 22 Si 0.739 3.261 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.117 4.117 27 N -0.145 5.145 28 N -0.051 5.051 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.170 0.830 33 H 0.173 0.827 34 H 0.258 0.742 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.164 0.836 38 H 0.035 0.965 39 H 0.119 0.881 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.481 -15.051 13.925 20.988 hybrid contribution 0.888 1.823 -0.532 2.096 sum -3.593 -13.228 13.393 19.164 Atomic orbital electron populations 1.20572 0.87471 1.03887 1.03231 1.22676 0.99017 0.90300 1.00599 1.22182 0.93665 1.00002 0.94751 1.22260 0.95938 0.98403 1.03240 1.19988 0.86286 0.91887 0.92969 1.41531 1.00845 1.08979 1.76814 1.17353 0.93263 0.88367 0.96214 1.21155 0.95501 0.98822 0.98293 1.21020 0.99784 0.93150 0.98446 1.21643 0.94965 0.99467 0.93367 1.19255 0.96965 0.94393 0.98018 1.20952 0.81580 0.82253 0.81452 1.90777 1.26658 1.78298 1.44776 1.86536 1.52031 1.29201 1.58612 1.20705 0.95590 0.83085 0.84278 0.93456 1.22171 0.96912 1.00971 1.01224 1.21045 0.92734 1.20325 1.21798 0.91176 1.24892 0.96781 0.96423 0.95897 1.69901 1.21120 1.31964 1.29636 0.86211 0.82001 0.79155 0.78730 1.19445 1.20732 1.20679 1.21226 1.00944 0.93278 0.96243 1.72945 0.99681 1.24369 1.17547 1.72709 0.99885 1.24794 1.07676 0.90323 0.90379 0.90247 0.82982 0.82733 0.74222 0.85051 0.84551 0.83556 0.96511 0.88137 0.94328 0.92388 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 10.19 36.00 0.37 -0.31 16 2 C 0.02 0.25 6.87 -82.39 -0.57 -0.31 16 3 C -0.08 -0.80 9.86 -39.25 -0.39 -1.19 16 4 C -0.17 -1.96 8.14 -39.00 -0.32 -2.28 16 5 C 0.33 4.07 7.51 -154.68 -1.16 2.90 16 6 N -0.65 -6.84 5.49 -9.89 -0.05 -6.89 16 7 C 0.14 1.58 5.87 -83.79 -0.49 1.09 16 8 C -0.12 -1.06 9.96 -39.30 -0.39 -1.45 16 9 C -0.11 -1.00 10.02 -39.67 -0.40 -1.40 16 10 C -0.08 -0.96 9.61 -39.14 -0.38 -1.34 16 11 C -0.08 -1.32 5.87 -105.01 -0.62 -1.93 16 12 C 0.49 10.18 7.87 34.62 0.27 10.45 16 13 O -0.51 -11.92 15.60 -19.24 -0.30 -12.22 16 14 O -0.35 -7.97 9.11 -40.51 -0.37 -8.34 16 15 C 0.22 5.65 2.56 -27.88 -0.07 5.58 16 16 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 17 C -0.16 -3.83 9.33 37.16 0.35 -3.48 16 18 C -0.52 -14.27 8.90 -34.44 -0.31 -14.58 16 19 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 20 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 21 N -0.89 -24.82 11.32 55.43 0.63 -24.19 16 22 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 C -0.10 -1.33 6.92 -38.95 -0.27 -1.60 16 27 N -0.30 -4.08 11.54 31.25 0.36 -3.72 16 28 N -0.21 -2.81 11.41 33.61 0.38 -2.42 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.44 8.09 -51.92 -0.42 0.02 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.16 1.82 5.50 -52.48 -0.29 1.53 16 34 H 0.42 3.55 8.95 -40.82 -0.37 3.18 16 35 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 36 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.15 1.88 7.60 -52.49 -0.40 1.48 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 2.66 6.07 -51.93 -0.32 2.34 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.14 2.10 6.27 -52.49 -0.33 1.77 16 LS Contribution 362.62 15.07 5.46 5.46 Total: -1.00 -32.25 362.62 -8.36 -40.61 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -4.99 Total: 4.30 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -4.46 Total: -8.25 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 1.32 Total: -37.22 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.67 Total: -20.56 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.25 -8.36 -40.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131368150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.691 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds