Wall clock time and date at job start Tue Mar 31 2020 14:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38813 * 119.99128 * 2 1 4 4 C 1.38570 * 118.03608 * 179.72948 * 3 2 1 5 5 C 1.39478 * 117.90739 * 0.52804 * 4 3 2 6 6 N 1.39122 * 120.16080 * 179.76030 * 5 4 3 7 7 C 1.39790 * 119.99982 * 352.15901 * 6 5 4 8 8 C 1.39040 * 120.00564 * 138.04174 * 7 6 5 9 9 C 1.38197 * 120.23298 * 180.02562 * 8 7 6 10 10 C 1.38026 * 120.23412 * 359.74296 * 9 8 7 11 11 C 1.39627 * 119.99346 * 0.51395 * 10 9 8 12 12 C 1.47751 * 120.11007 * 179.76687 * 11 10 9 13 13 O 1.21466 * 119.99667 * 179.72344 * 12 11 10 14 14 O 1.34705 * 119.99867 * 359.71983 * 12 11 10 15 15 C 1.45202 * 116.99798 * 180.02562 * 14 12 11 16 16 H 1.09003 * 109.47086 * 329.99970 * 15 14 12 17 17 C 1.52999 * 109.47150 * 89.99666 * 15 14 12 18 18 C 1.50698 * 109.47297 * 210.00167 * 15 14 12 19 19 H 1.08003 * 119.99735 * 359.97438 * 18 15 14 20 20 C 1.37879 * 120.00026 * 180.02562 * 18 15 14 21 21 N 1.31511 * 120.00114 * 359.97438 * 20 18 15 22 22 Si 1.86801 * 119.99838 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.47039 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47100 * 119.99716 * 22 20 18 25 25 H 1.48494 * 109.47089 * 239.99674 * 22 20 18 26 26 C 1.38633 * 120.00008 * 318.06512 * 7 6 5 27 27 N 1.32508 * 119.68350 * 359.48844 * 5 4 3 28 28 N 1.28345 * 122.06669 * 0.24641 * 27 5 4 29 29 H 1.08997 * 109.47350 * 269.97609 * 1 2 3 30 30 H 1.09008 * 109.47296 * 29.97322 * 1 2 3 31 31 H 1.08999 * 109.47594 * 149.97548 * 1 2 3 32 32 H 1.07995 * 120.98345 * 0.02562 * 3 2 1 33 33 H 1.08004 * 121.04577 * 180.28983 * 4 3 2 34 34 H 0.96994 * 120.00476 * 172.15384 * 6 5 4 35 35 H 1.08006 * 119.88014 * 0.04641 * 8 7 6 36 36 H 1.07999 * 119.88783 * 179.97438 * 9 8 7 37 37 H 1.07995 * 120.00364 * 180.25200 * 10 9 8 38 38 H 1.08994 * 109.47450 * 300.00369 * 17 15 14 39 39 H 1.09004 * 109.47299 * 179.97438 * 17 15 14 40 40 H 1.09003 * 109.46878 * 60.00177 * 17 15 14 41 41 H 0.96998 * 119.99910 * 180.02562 * 21 20 18 42 42 H 1.07997 * 120.11453 * 359.95258 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2008 1.2023 0.0000 4 6 3.5857 1.1550 0.0058 5 6 4.1961 -0.0991 -0.0001 6 7 5.5836 -0.2012 0.0002 7 6 6.3688 0.9444 -0.1587 8 6 7.5076 1.1203 0.6194 9 6 8.2869 2.2513 0.4666 10 6 7.9432 3.2118 -0.4632 11 6 6.7986 3.0476 -1.2459 12 6 6.4254 4.0765 -2.2383 13 8 5.4320 3.9292 -2.9216 14 8 7.1867 5.1780 -2.3852 15 6 6.7595 6.1470 -3.3787 16 1 6.2352 5.6337 -4.1849 17 6 5.8214 7.1652 -2.7276 18 6 7.9646 6.8591 -3.9367 19 1 8.9529 6.6089 -3.5800 20 6 7.8056 7.8309 -4.9018 21 7 6.6022 8.1359 -5.3358 22 14 9.2995 8.7141 -5.5929 23 1 10.5282 8.1905 -4.9440 24 1 9.3772 8.4833 -7.0579 25 1 9.1806 10.1702 -5.3270 26 6 6.0117 1.9056 -1.0917 27 7 3.4482 -1.1929 -0.0006 28 7 2.1658 -1.1415 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8903 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 1.6769 2.1466 0.0004 33 1 4.1739 2.0608 0.0107 34 1 6.0062 -1.0672 0.1108 35 1 7.7843 0.3702 1.3455 36 1 9.1701 2.3824 1.0741 37 1 8.5571 4.0922 -0.5824 38 1 4.9497 6.6502 -2.3240 39 1 5.5010 7.8929 -3.4733 40 1 6.3456 7.6785 -1.9214 41 1 6.4904 8.8193 -6.0150 42 1 5.1277 1.7708 -1.6974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131368150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:04 Heat of formation + Delta-G solvation = -15.326626 kcal Electronic energy + Delta-G solvation = -26464.559058 eV Core-core repulsion = 22602.519720 eV Total energy + Delta-G solvation = -3862.039338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31048 -41.49930 -40.26137 -37.67451 -37.24089 -35.35168 -34.72902 -33.38194 -32.34804 -31.62385 -30.72195 -28.32903 -27.48124 -26.19618 -25.28155 -24.23152 -23.15219 -22.92703 -21.47897 -19.55647 -19.36073 -18.67513 -18.10437 -17.91491 -17.18967 -16.85674 -16.81660 -16.55340 -16.36617 -16.12447 -15.81804 -14.98239 -14.89846 -14.78293 -14.44442 -14.29334 -14.00033 -13.95059 -13.60744 -13.23236 -13.15112 -13.05097 -12.92064 -12.83030 -12.65940 -12.40743 -12.35604 -12.17947 -12.14984 -11.63721 -11.51423 -11.20588 -11.01028 -10.70526 -10.62471 -10.37610 -10.14523 -8.88062 -8.30232 -6.47073 -0.42062 -0.25263 -0.15343 0.36937 1.41818 1.42732 1.51645 1.56485 1.64495 1.94079 2.39902 2.49029 2.69936 3.00968 3.21249 3.52074 3.62513 3.64253 3.68518 3.77781 4.00964 4.03389 4.11728 4.30204 4.43612 4.51421 4.56374 4.66625 4.71830 4.76289 4.79541 4.81111 4.92031 5.03106 5.06100 5.14451 5.27025 5.31460 5.32424 5.46766 5.56835 5.59853 5.87061 5.91862 6.02348 6.36333 6.57470 6.87072 7.24365 7.71070 8.77899 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.016598 B = 0.002741 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.534556 B =10213.382392 C =11529.670347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.023 3.977 3 C -0.077 4.077 4 C -0.179 4.179 5 C 0.320 3.680 6 N -0.645 5.645 7 C 0.147 3.853 8 C -0.090 4.090 9 C -0.088 4.088 10 C -0.078 4.078 11 C -0.111 4.111 12 C 0.489 3.511 13 O -0.552 6.552 14 O -0.351 6.351 15 C 0.218 3.782 16 H 0.006 0.994 17 C -0.142 4.142 18 C -0.546 4.546 19 H 0.071 0.929 20 C 0.015 3.985 21 N -0.918 5.918 22 Si 0.984 3.016 23 H -0.261 1.261 24 H -0.278 1.278 25 H -0.271 1.271 26 C -0.102 4.102 27 N -0.320 5.320 28 N -0.239 5.239 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.179 0.821 33 H 0.152 0.848 34 H 0.430 0.570 35 H 0.174 0.826 36 H 0.179 0.821 37 H 0.142 0.858 38 H 0.023 0.977 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.271 0.729 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 -14.094 16.410 21.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.105 4.105 4 C -0.211 4.211 5 C 0.079 3.921 6 N -0.274 5.274 7 C 0.051 3.949 8 C -0.111 4.111 9 C -0.106 4.106 10 C -0.097 4.097 11 C -0.113 4.113 12 C 0.336 3.664 13 O -0.445 6.445 14 O -0.267 6.267 15 C 0.164 3.836 16 H 0.023 0.977 17 C -0.200 4.200 18 C -0.583 4.583 19 H 0.089 0.911 20 C -0.184 4.184 21 N -0.555 5.555 22 Si 0.807 3.193 23 H -0.185 1.185 24 H -0.203 1.203 25 H -0.196 1.196 26 C -0.123 4.123 27 N -0.169 5.169 28 N -0.080 5.080 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.197 0.803 33 H 0.170 0.830 34 H 0.270 0.730 35 H 0.191 0.809 36 H 0.196 0.804 37 H 0.160 0.840 38 H 0.042 0.958 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.890 -15.552 16.051 22.536 hybrid contribution 0.322 1.872 -1.122 2.206 sum -2.568 -13.680 14.929 20.411 Atomic orbital electron populations 1.20706 0.84901 1.04806 1.04582 1.23237 1.00697 0.89733 0.99061 1.22562 0.93341 1.01129 0.93467 1.22384 0.96794 0.98191 1.03753 1.20109 0.86998 0.91846 0.93129 1.41473 1.00180 1.09322 1.76460 1.17397 0.93920 0.87806 0.95769 1.21620 0.93306 0.99023 0.97103 1.21420 1.00523 0.91656 0.96980 1.21728 0.93759 1.00449 0.93738 1.18964 0.99521 0.93971 0.98852 1.21914 0.80647 0.82125 0.81753 1.90742 1.28256 1.78899 1.46652 1.86514 1.52569 1.29870 1.57717 1.20404 0.95410 0.83532 0.84207 0.97662 1.21987 0.96977 1.00246 1.00765 1.21316 0.92949 1.21194 1.22881 0.91126 1.25849 0.99929 0.96872 0.95794 1.70023 1.23260 1.32345 1.29920 0.85116 0.78283 0.78063 0.77838 1.18484 1.20347 1.19607 1.21041 1.00344 0.93779 0.97148 1.72857 1.00149 1.25118 1.18735 1.72634 1.00027 1.26257 1.09081 0.88610 0.88467 0.90309 0.80315 0.83045 0.72967 0.80902 0.80378 0.83968 0.95836 0.89996 0.93219 0.91982 0.86425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 10.19 71.23 0.73 -0.46 16 2 C 0.02 0.48 6.87 42.70 0.29 0.78 16 3 C -0.08 -1.54 9.86 22.49 0.22 -1.32 16 4 C -0.18 -4.23 8.14 22.65 0.18 -4.05 16 5 C 0.32 7.85 7.51 133.07 1.00 8.85 16 6 N -0.64 -12.62 5.49 -185.20 -1.02 -13.64 16 7 C 0.15 2.98 5.87 38.16 0.22 3.20 16 8 C -0.09 -1.25 9.96 22.45 0.22 -1.02 16 9 C -0.09 -1.30 10.02 22.21 0.22 -1.08 16 10 C -0.08 -1.87 9.61 22.55 0.22 -1.66 16 11 C -0.11 -3.53 5.87 -20.11 -0.12 -3.65 16 12 C 0.49 21.26 7.87 70.34 0.55 21.81 16 13 O -0.55 -27.47 15.60 19.94 0.31 -27.16 16 14 O -0.35 -16.77 9.11 -56.15 -0.51 -17.28 16 15 C 0.22 11.94 2.56 29.85 0.08 12.02 16 16 H 0.01 0.34 7.16 -2.39 -0.02 0.33 16 17 C -0.14 -7.26 9.33 71.98 0.67 -6.59 16 18 C -0.55 -30.62 8.90 25.60 0.23 -30.39 16 19 H 0.07 3.85 7.81 -2.91 -0.02 3.82 16 20 C 0.02 0.83 5.30 84.66 0.45 1.28 16 21 N -0.92 -52.39 11.32 21.45 0.24 -52.14 16 22 Si 0.98 42.27 29.54 68.60 2.03 44.30 16 23 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 24 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 C -0.10 -2.85 6.92 22.68 0.16 -2.69 16 27 N -0.32 -8.84 11.54 -55.04 -0.64 -9.47 16 28 N -0.24 -6.44 11.41 -47.57 -0.54 -6.98 16 29 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 0.89 8.09 -2.38 -0.02 0.87 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.18 2.48 8.06 -2.91 -0.02 2.45 16 33 H 0.15 3.64 5.50 -2.91 -0.02 3.62 16 34 H 0.43 6.45 8.95 -92.71 -0.83 5.62 16 35 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 36 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 37 H 0.14 3.52 7.60 -2.91 -0.02 3.50 16 38 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 4.50 6.07 -2.38 -0.01 4.48 16 40 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.12 3.77 6.27 -2.91 -0.02 3.75 16 Total: -1.00 -74.48 362.62 5.45 -69.03 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.24 Total: 18.32 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 5.33 Total: -4.98 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -1.95 Total: -82.23 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -0.20 Total: -44.44 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -74.48 5.45 -69.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131368150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.706 kcal (2) G-P(sol) polarization free energy of solvation -74.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds