Wall clock time and date at job start Tue Mar 31 2020 15:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35232 * 126.06154 * 2 1 4 4 C 1.40439 * 107.86028 * 179.88409 * 3 2 1 5 5 N 1.40064 * 125.97303 * 180.15278 * 4 3 2 6 6 C 1.34775 * 120.00023 * 0.24757 * 5 4 3 7 7 O 1.21745 * 120.00125 * 359.97438 * 6 5 4 8 8 C 1.46219 * 119.99736 * 180.02562 * 6 5 4 9 9 C 1.35041 * 119.99881 * 179.97438 * 8 6 5 10 10 C 1.46959 * 120.00013 * 179.97438 * 9 8 6 11 11 C 1.40022 * 120.09828 * 359.72951 * 10 9 8 12 12 C 1.37598 * 119.89131 * 179.71413 * 11 10 9 13 13 C 1.39177 * 120.10833 * 0.55729 * 12 11 10 14 14 O 1.35564 * 119.90362 * 179.73983 * 13 12 11 15 15 C 1.34783 * 116.99952 * 174.42669 * 14 13 12 16 16 H 1.08000 * 120.00433 * 5.04685 * 15 14 13 17 17 C 1.38725 * 119.99728 * 185.05386 * 15 14 13 18 18 N 1.31512 * 119.99653 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 119.99974 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47107 * 89.99921 * 19 17 15 21 21 H 1.48502 * 109.47034 * 209.99642 * 19 17 15 22 22 H 1.48499 * 109.47287 * 329.99972 * 19 17 15 23 23 C 1.39177 * 120.19597 * 359.71951 * 13 12 11 24 24 C 1.37596 * 120.10621 * 359.97438 * 23 13 12 25 25 N 1.31230 * 108.04869 * 0.38444 * 4 3 2 26 26 N 1.34966 * 126.06955 * 180.30957 * 2 1 3 27 27 C 1.46501 * 125.97233 * 359.97438 * 26 2 1 28 28 H 1.09008 * 109.47046 * 269.69308 * 1 2 3 29 29 H 1.08997 * 109.47265 * 149.68739 * 1 2 3 30 30 H 1.09002 * 109.47509 * 29.68691 * 1 2 3 31 31 H 1.07998 * 126.07455 * 359.97438 * 3 2 1 32 32 H 0.96996 * 119.99777 * 180.24953 * 5 4 3 33 33 H 1.07997 * 120.00379 * 359.97438 * 8 6 5 34 34 H 1.08009 * 120.00259 * 0.02562 * 9 8 6 35 35 H 1.07998 * 120.05347 * 359.97438 * 11 10 9 36 36 H 1.08001 * 119.95021 * 180.25402 * 12 11 10 37 37 H 0.96997 * 119.99436 * 180.02562 * 18 17 15 38 38 H 1.08009 * 119.94848 * 179.97438 * 23 13 12 39 39 H 1.07997 * 120.05509 * 180.02562 * 24 23 13 40 40 H 1.08998 * 109.47846 * 89.99514 * 27 26 2 41 41 H 1.09001 * 109.47247 * 210.00054 * 27 26 2 42 42 H 1.09002 * 109.47095 * 329.99811 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0932 0.0000 4 6 3.6372 0.6545 0.0027 5 7 4.7728 1.4743 0.0066 6 6 4.6360 2.8151 0.0131 7 8 3.5253 3.3137 0.0151 8 6 5.8216 3.6709 0.0166 9 6 5.6845 5.0143 0.0226 10 6 6.8761 5.8745 0.0267 11 6 8.1545 5.3032 0.0301 12 6 9.2672 6.1126 0.0280 13 6 9.1237 7.4969 0.0342 14 8 10.2228 8.2904 0.0374 15 6 10.0193 9.6182 -0.0733 16 1 9.0137 10.0120 -0.0772 17 6 11.1017 10.4790 -0.1824 18 7 10.9031 11.7745 -0.2909 19 14 12.8411 9.7981 -0.1751 20 1 13.2596 9.4943 -1.5672 21 1 13.7637 10.8033 0.4110 22 1 12.8827 8.5552 0.6366 23 6 7.8549 8.0691 0.0366 24 6 6.7364 7.2678 0.0324 25 7 3.6337 -0.6578 -0.0041 26 7 2.3016 -1.0909 -0.0059 27 6 1.8500 -2.4845 -0.0129 28 1 -0.3633 -0.0055 1.0277 29 1 -0.3633 -0.8871 -0.5187 30 1 -0.3634 0.8928 -0.5090 31 1 1.9718 2.1211 -0.0004 32 1 5.6577 1.0771 0.0046 33 1 6.8069 3.2287 0.0144 34 1 4.6992 5.4567 0.0252 35 1 8.2669 4.2291 0.0302 36 1 10.2537 5.6730 0.0265 37 1 11.6599 12.3764 -0.3675 38 1 7.7482 9.1439 0.0419 39 1 5.7523 7.7126 0.0339 40 1 1.7374 -2.8250 -1.0422 41 1 2.5847 -3.1072 0.4975 42 1 0.8915 -2.5584 0.5009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133104476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:51 Heat of formation + Delta-G solvation = 64.839818 kcal Electronic energy + Delta-G solvation = -25027.683001 eV Core-core repulsion = 21169.119941 eV Total energy + Delta-G solvation = -3858.563060 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.56560 -39.66651 -39.28747 -37.10746 -35.25020 -33.36462 -32.62860 -32.38036 -32.19929 -30.55191 -28.64917 -27.29023 -26.59426 -25.62339 -23.73214 -22.34440 -21.58958 -20.53953 -20.26231 -19.20430 -18.03691 -17.49211 -17.10240 -16.81743 -16.11832 -16.03454 -15.10528 -15.03076 -14.88235 -14.31094 -14.11332 -14.08606 -13.96300 -13.67060 -13.56401 -13.30857 -12.90241 -12.86967 -12.80146 -12.64870 -12.43564 -12.41089 -11.92401 -11.85416 -11.22745 -11.04132 -10.83469 -10.81966 -10.78113 -10.29045 -9.84547 -9.70761 -9.57047 -8.96000 -8.83886 -8.49059 -8.34385 -7.27428 -6.62417 -4.25912 0.85856 1.62976 2.02011 2.02184 2.30932 2.78759 3.11096 3.11636 3.14983 3.28033 3.53995 4.07379 4.29153 4.39219 4.40485 4.60773 4.75422 4.79285 4.86167 4.92172 5.02499 5.12269 5.13767 5.25965 5.40416 5.43394 5.48613 5.56644 5.61984 5.72395 5.91905 5.97639 6.06840 6.27231 6.37206 6.49367 6.64531 6.71509 6.86687 6.89309 7.06136 7.06985 7.15363 7.39592 7.60736 7.73565 7.81992 8.12325 8.70733 9.30784 10.43685 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.043762 B = 0.001681 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.672058 B =16657.163396 C =17270.597556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.085 3.915 3 C -0.265 4.265 4 C 0.307 3.693 5 N -0.637 5.637 6 C 0.566 3.434 7 O -0.531 6.531 8 C -0.280 4.280 9 C 0.047 3.953 10 C -0.193 4.193 11 C -0.043 4.043 12 C -0.200 4.200 13 C 0.175 3.825 14 O -0.201 6.201 15 C -0.392 4.392 16 H 0.111 0.889 17 C 0.066 3.934 18 N -0.865 5.865 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.258 1.258 23 C -0.231 4.231 24 C -0.034 4.034 25 N -0.331 5.331 26 N -0.373 5.373 27 C 0.106 3.894 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.173 0.827 32 H 0.415 0.585 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.283 0.717 38 H 0.138 0.862 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.055 -23.375 0.586 28.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.042 4.042 3 C -0.296 4.296 4 C 0.051 3.949 5 N -0.285 5.285 6 C 0.358 3.642 7 O -0.409 6.409 8 C -0.301 4.301 9 C 0.027 3.973 10 C -0.194 4.194 11 C -0.061 4.061 12 C -0.219 4.219 13 C 0.120 3.880 14 O -0.103 6.103 15 C -0.467 4.467 16 H 0.129 0.871 17 C -0.139 4.139 18 N -0.501 5.501 19 Si 0.732 3.268 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.182 1.182 23 C -0.250 4.250 24 C -0.053 4.053 25 N -0.161 5.161 26 N -0.158 5.158 27 C -0.035 4.035 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.190 0.810 32 H 0.251 0.749 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.094 0.906 38 H 0.155 0.845 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.774 -23.923 0.579 28.661 hybrid contribution 0.803 0.336 -0.030 0.871 sum -14.971 -23.587 0.549 27.942 Atomic orbital electron populations 1.20438 0.87164 1.03898 1.03330 1.21148 0.94833 0.86830 1.01342 1.21647 0.89821 1.00635 1.17449 1.19153 0.88305 0.89104 0.98322 1.42652 1.06991 1.05508 1.73344 1.18469 0.90261 0.80416 0.75021 1.90714 1.27010 1.73899 1.49236 1.22261 0.96584 0.94095 1.17175 1.22329 0.97707 0.92586 0.84659 1.18495 0.92149 0.92946 1.15825 1.20900 0.91127 0.98542 0.95573 1.20152 0.99030 0.90573 1.12147 1.19375 0.86584 0.90362 0.91708 1.83503 1.29658 1.19543 1.77636 1.20892 0.97182 0.77035 1.51568 0.87140 1.24546 0.99936 0.94325 0.95106 1.69617 1.33336 1.01849 1.45282 0.86155 0.81728 0.79528 0.79415 1.19617 1.20491 1.18182 1.21224 0.91678 1.01297 1.10764 1.21046 0.97973 0.92129 0.94110 1.77330 0.97031 1.09636 1.32114 1.47941 1.02727 1.05781 1.59352 1.21777 1.00750 0.77868 1.03143 0.90170 0.91206 0.89381 0.80986 0.74906 0.85391 0.85511 0.86136 0.86073 0.90618 0.84466 0.86436 0.90982 0.89381 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 9.89 36.01 0.36 -0.17 16 2 C 0.09 0.88 6.92 -82.28 -0.57 0.31 16 3 C -0.27 -3.52 9.52 -39.82 -0.38 -3.90 16 4 C 0.31 4.21 8.11 -154.46 -1.25 2.96 16 5 N -0.64 -7.78 5.44 -12.45 -0.07 -7.85 16 6 C 0.57 7.76 7.70 -13.06 -0.10 7.66 16 7 O -0.53 -8.63 13.35 5.15 0.07 -8.56 16 8 C -0.28 -3.51 9.41 -37.51 -0.35 -3.87 16 9 C 0.05 0.65 9.45 -37.19 -0.35 0.30 16 10 C -0.19 -3.05 5.87 -105.03 -0.62 -3.66 16 11 C -0.04 -0.67 9.40 -39.15 -0.37 -1.04 16 12 C -0.20 -3.63 9.97 -39.47 -0.39 -4.03 16 13 C 0.17 3.75 6.66 -38.88 -0.26 3.49 16 14 O -0.20 -4.96 8.57 0.75 0.01 -4.95 16 15 C -0.39 -10.40 9.94 30.91 0.31 -10.09 16 16 H 0.11 2.98 5.41 -52.49 -0.28 2.70 16 17 C 0.07 1.76 5.49 -17.51 -0.10 1.67 16 18 N -0.87 -23.70 13.96 55.48 0.77 -22.92 16 19 Si 0.91 20.45 28.62 -169.99 -4.86 15.59 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.26 -5.83 7.11 56.52 0.40 -5.42 16 23 C -0.23 -4.62 9.14 -39.47 -0.36 -4.98 16 24 C -0.03 -0.58 9.78 -39.15 -0.38 -0.96 16 25 N -0.33 -4.36 12.59 31.43 0.40 -3.96 16 26 N -0.37 -3.89 4.01 -63.90 -0.26 -4.15 16 27 C 0.11 0.58 11.09 59.85 0.66 1.24 16 28 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 29 H 0.07 0.27 7.71 -51.93 -0.40 -0.13 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.17 2.47 5.90 -52.49 -0.31 2.16 16 32 H 0.42 3.91 8.80 -40.82 -0.36 3.56 16 33 H 0.13 1.33 6.07 -52.49 -0.32 1.01 16 34 H 0.13 1.72 7.52 -52.48 -0.39 1.33 16 35 H 0.12 1.48 6.16 -52.49 -0.32 1.16 16 36 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 37 H 0.28 7.14 8.31 -40.82 -0.34 6.81 16 38 H 0.14 2.87 5.62 -52.48 -0.29 2.58 16 39 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.25 7.65 -51.93 -0.40 -0.15 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -31.98 364.05 -7.37 -39.35 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -4.75 Total: 7.06 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -4.16 Total: -15.07 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.85 Total: -38.89 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.08 Total: -13.52 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.86 Total: 15.59 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.98 -7.37 -39.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133104476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.186 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds