Wall clock time and date at job start Tue Mar 31 2020 15:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35232 * 126.06154 * 2 1 4 4 C 1.40439 * 107.86028 * 179.88409 * 3 2 1 5 5 N 1.40064 * 125.97303 * 180.15278 * 4 3 2 6 6 C 1.34775 * 120.00023 * 0.24757 * 5 4 3 7 7 O 1.21745 * 120.00125 * 359.97438 * 6 5 4 8 8 C 1.46219 * 119.99736 * 180.02562 * 6 5 4 9 9 C 1.35041 * 119.99881 * 179.97438 * 8 6 5 10 10 C 1.46959 * 120.00013 * 179.97438 * 9 8 6 11 11 C 1.40022 * 120.09828 * 359.72951 * 10 9 8 12 12 C 1.37598 * 119.89131 * 179.71413 * 11 10 9 13 13 C 1.39177 * 120.10833 * 0.55729 * 12 11 10 14 14 O 1.35564 * 119.90362 * 179.73983 * 13 12 11 15 15 C 1.34783 * 116.99952 * 174.42669 * 14 13 12 16 16 H 1.08000 * 120.00433 * 5.04685 * 15 14 13 17 17 C 1.38725 * 119.99728 * 185.05386 * 15 14 13 18 18 N 1.31512 * 119.99653 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 119.99974 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47107 * 89.99921 * 19 17 15 21 21 H 1.48502 * 109.47034 * 209.99642 * 19 17 15 22 22 H 1.48499 * 109.47287 * 329.99972 * 19 17 15 23 23 C 1.39177 * 120.19597 * 359.71951 * 13 12 11 24 24 C 1.37596 * 120.10621 * 359.97438 * 23 13 12 25 25 N 1.31230 * 108.04869 * 0.38444 * 4 3 2 26 26 N 1.34966 * 126.06955 * 180.30957 * 2 1 3 27 27 C 1.46501 * 125.97233 * 359.97438 * 26 2 1 28 28 H 1.09008 * 109.47046 * 269.69308 * 1 2 3 29 29 H 1.08997 * 109.47265 * 149.68739 * 1 2 3 30 30 H 1.09002 * 109.47509 * 29.68691 * 1 2 3 31 31 H 1.07998 * 126.07455 * 359.97438 * 3 2 1 32 32 H 0.96996 * 119.99777 * 180.24953 * 5 4 3 33 33 H 1.07997 * 120.00379 * 359.97438 * 8 6 5 34 34 H 1.08009 * 120.00259 * 0.02562 * 9 8 6 35 35 H 1.07998 * 120.05347 * 359.97438 * 11 10 9 36 36 H 1.08001 * 119.95021 * 180.25402 * 12 11 10 37 37 H 0.96997 * 119.99436 * 180.02562 * 18 17 15 38 38 H 1.08009 * 119.94848 * 179.97438 * 23 13 12 39 39 H 1.07997 * 120.05509 * 180.02562 * 24 23 13 40 40 H 1.08998 * 109.47846 * 89.99514 * 27 26 2 41 41 H 1.09001 * 109.47247 * 210.00054 * 27 26 2 42 42 H 1.09002 * 109.47095 * 329.99811 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0932 0.0000 4 6 3.6372 0.6545 0.0027 5 7 4.7728 1.4743 0.0066 6 6 4.6360 2.8151 0.0131 7 8 3.5253 3.3137 0.0151 8 6 5.8216 3.6709 0.0166 9 6 5.6845 5.0143 0.0226 10 6 6.8761 5.8745 0.0267 11 6 8.1545 5.3032 0.0301 12 6 9.2672 6.1126 0.0280 13 6 9.1237 7.4969 0.0342 14 8 10.2228 8.2904 0.0374 15 6 10.0193 9.6182 -0.0733 16 1 9.0137 10.0120 -0.0772 17 6 11.1017 10.4790 -0.1824 18 7 10.9031 11.7745 -0.2909 19 14 12.8411 9.7981 -0.1751 20 1 13.2596 9.4943 -1.5672 21 1 13.7637 10.8033 0.4110 22 1 12.8827 8.5552 0.6366 23 6 7.8549 8.0691 0.0366 24 6 6.7364 7.2678 0.0324 25 7 3.6337 -0.6578 -0.0041 26 7 2.3016 -1.0909 -0.0059 27 6 1.8500 -2.4845 -0.0129 28 1 -0.3633 -0.0055 1.0277 29 1 -0.3633 -0.8871 -0.5187 30 1 -0.3634 0.8928 -0.5090 31 1 1.9718 2.1211 -0.0004 32 1 5.6577 1.0771 0.0046 33 1 6.8069 3.2287 0.0144 34 1 4.6992 5.4567 0.0252 35 1 8.2669 4.2291 0.0302 36 1 10.2537 5.6730 0.0265 37 1 11.6599 12.3764 -0.3675 38 1 7.7482 9.1439 0.0419 39 1 5.7523 7.7126 0.0339 40 1 1.7374 -2.8250 -1.0422 41 1 2.5847 -3.1072 0.4975 42 1 0.8915 -2.5584 0.5009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133104476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:50 Heat of formation + Delta-G solvation = 45.151936 kcal Electronic energy + Delta-G solvation = -25028.536731 eV Core-core repulsion = 21169.119941 eV Total energy + Delta-G solvation = -3859.416791 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.43629 -41.00206 -40.59759 -38.61758 -36.23592 -34.79796 -34.24960 -33.31950 -32.87607 -31.99692 -30.00326 -27.98565 -27.66576 -27.05654 -24.93847 -23.80783 -22.80507 -21.44846 -21.34754 -20.47722 -19.57653 -19.13941 -18.21129 -17.71889 -17.01164 -16.83084 -16.63232 -16.41629 -15.87727 -15.79103 -15.64236 -15.55233 -15.14081 -14.72441 -14.38180 -14.25711 -14.06878 -13.97209 -13.93360 -13.62787 -13.37363 -13.36876 -13.19131 -12.95235 -12.73139 -12.62683 -12.35916 -11.93632 -11.72110 -11.67489 -11.30134 -11.16659 -10.97094 -10.67848 -9.90759 -9.71699 -9.25583 -8.74014 -8.53557 -6.25171 -0.36024 0.56476 0.72796 1.09420 1.24698 1.32861 1.36815 1.52381 1.73360 2.24542 2.26373 2.42247 2.80476 3.00777 3.15683 3.55448 3.73928 3.87821 3.93182 4.05723 4.23245 4.32313 4.32887 4.44755 4.46174 4.57687 4.63088 4.66417 4.70011 4.75704 4.84413 4.95997 5.05386 5.09164 5.14132 5.24744 5.30297 5.38703 5.57739 5.70699 5.76330 5.79542 5.83880 6.12725 6.14870 6.19398 6.79697 6.81155 7.08425 7.51010 8.57188 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.043762 B = 0.001681 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.672058 B =16657.163396 C =17270.597556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.099 3.901 3 C -0.306 4.306 4 C 0.284 3.716 5 N -0.626 5.626 6 C 0.561 3.439 7 O -0.558 6.558 8 C -0.240 4.240 9 C 0.027 3.973 10 C -0.163 4.163 11 C -0.038 4.038 12 C -0.195 4.195 13 C 0.137 3.863 14 O -0.233 6.233 15 C -0.404 4.404 16 H 0.085 0.915 17 C 0.013 3.987 18 N -0.916 5.916 19 Si 0.971 3.029 20 H -0.265 1.265 21 H -0.268 1.268 22 H -0.260 1.260 23 C -0.244 4.244 24 C -0.042 4.042 25 N -0.353 5.353 26 N -0.370 5.370 27 C 0.093 3.907 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.155 0.845 32 H 0.428 0.572 33 H 0.161 0.839 34 H 0.129 0.871 35 H 0.167 0.833 36 H 0.138 0.862 37 H 0.286 0.714 38 H 0.114 0.886 39 H 0.141 0.859 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.723 -28.477 0.648 33.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.030 4.030 3 C -0.336 4.336 4 C 0.029 3.971 5 N -0.274 5.274 6 C 0.353 3.647 7 O -0.436 6.436 8 C -0.261 4.261 9 C 0.007 3.993 10 C -0.164 4.164 11 C -0.056 4.056 12 C -0.214 4.214 13 C 0.087 3.913 14 O -0.139 6.139 15 C -0.480 4.480 16 H 0.102 0.898 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.792 3.208 20 H -0.190 1.190 21 H -0.193 1.193 22 H -0.184 1.184 23 C -0.264 4.264 24 C -0.060 4.060 25 N -0.184 5.184 26 N -0.155 5.155 27 C -0.046 4.046 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.172 0.828 32 H 0.266 0.734 33 H 0.178 0.822 34 H 0.147 0.853 35 H 0.185 0.815 36 H 0.156 0.844 37 H 0.096 0.904 38 H 0.132 0.868 39 H 0.159 0.841 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.468 -29.116 0.642 33.960 hybrid contribution 0.757 1.317 -0.042 1.520 sum -16.711 -27.798 0.600 32.440 Atomic orbital electron populations 1.20615 0.83877 1.05385 1.04794 1.21699 0.96667 0.86008 0.98576 1.21658 0.90538 1.00894 1.20542 1.19385 0.88755 0.89554 0.99359 1.42513 1.07571 1.05005 1.72352 1.18673 0.90139 0.81003 0.74845 1.90729 1.28177 1.74537 1.50204 1.22533 0.97533 0.93380 1.12606 1.22210 0.97003 0.92928 0.87114 1.18781 0.93233 0.92541 1.11809 1.21384 0.89834 1.00579 0.93774 1.20498 1.00970 0.89138 1.10839 1.19962 0.86491 0.91714 0.93153 1.83461 1.30713 1.18356 1.81395 1.20769 0.96379 0.78503 1.52345 0.89753 1.25319 1.03655 0.94541 0.95129 1.69704 1.34369 1.02951 1.48557 0.85217 0.77272 0.78774 0.79492 1.19010 1.19291 1.18382 1.21233 0.92698 1.00718 1.11719 1.21307 0.98027 0.92820 0.93810 1.77241 0.99113 1.09310 1.32715 1.48393 1.01857 1.07484 1.57740 1.22231 1.02282 0.75326 1.04771 0.88544 0.88475 0.89152 0.82757 0.73362 0.82168 0.85303 0.81534 0.84399 0.90389 0.86836 0.84075 0.89408 0.88984 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 9.89 71.24 0.70 -0.03 16 2 C 0.10 1.83 6.92 41.38 0.29 2.11 16 3 C -0.31 -7.82 9.52 22.11 0.21 -7.61 16 4 C 0.28 7.37 8.11 133.36 1.08 8.45 16 5 N -0.63 -13.80 5.44 -311.49 -1.69 -15.49 16 6 C 0.56 13.92 7.70 86.32 0.66 14.58 16 7 O -0.56 -17.38 13.35 -4.49 -0.06 -17.44 16 8 C -0.24 -4.98 9.41 23.61 0.22 -4.75 16 9 C 0.03 0.66 9.45 23.82 0.23 0.89 16 10 C -0.16 -4.65 5.87 -20.13 -0.12 -4.76 16 11 C -0.04 -1.04 9.40 22.55 0.21 -0.82 16 12 C -0.20 -6.76 9.97 22.34 0.22 -6.54 16 13 C 0.14 6.05 6.66 22.72 0.15 6.21 16 14 O -0.23 -12.07 8.57 -20.22 -0.17 -12.25 16 15 C -0.40 -22.99 9.94 67.94 0.68 -22.31 16 16 H 0.08 5.03 5.41 -2.91 -0.02 5.01 16 17 C 0.01 0.74 5.49 84.86 0.47 1.20 16 18 N -0.92 -53.32 13.96 21.62 0.30 -53.02 16 19 Si 0.97 43.78 28.62 68.60 1.96 45.75 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 22 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 23 C -0.24 -10.21 9.14 22.34 0.20 -10.00 16 24 C -0.04 -1.37 9.78 22.55 0.22 -1.15 16 25 N -0.35 -8.62 12.59 -54.49 -0.69 -9.31 16 26 N -0.37 -6.72 4.01 -356.08 -1.43 -8.15 16 27 C 0.09 0.67 11.09 127.77 1.42 2.09 16 28 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.10 0.30 7.71 -2.39 -0.02 0.28 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.15 4.44 5.90 -2.91 -0.02 4.43 16 32 H 0.43 6.73 8.80 -92.71 -0.82 5.91 16 33 H 0.16 2.29 6.07 -2.91 -0.02 2.27 16 34 H 0.13 3.18 7.52 -2.91 -0.02 3.15 16 35 H 0.17 3.01 6.16 -2.91 -0.02 2.99 16 36 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 37 H 0.29 15.27 8.31 -92.71 -0.77 14.50 16 38 H 0.11 5.23 5.62 -2.91 -0.02 5.22 16 39 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 40 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.12 0.12 7.65 -2.39 -0.02 0.10 16 Total: -1.00 -75.82 364.05 5.33 -70.48 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.27 Total: 21.89 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: 6.85 Total: -22.46 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -3.51 Total: -85.97 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.23 Total: -29.69 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.96 Total: 45.75 kcal Total: -75.82 5.33 -70.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133104476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.636 kcal (2) G-P(sol) polarization free energy of solvation -75.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds