Wall clock time and date at job start Tue Mar 31 2020 15:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30174 * 126.80416 * 2 1 4 4 O 1.20899 * 111.73996 * 179.97438 * 3 2 1 5 5 C 1.34286 * 111.63119 * 359.72708 * 4 3 2 6 6 C 1.50699 * 126.82219 * 180.29872 * 5 4 3 7 7 C 1.52995 * 117.49928 * 8.79076 * 6 5 4 8 8 C 1.52998 * 117.49647 * 300.16534 * 6 5 4 9 9 C 1.35868 * 106.35621 * 0.43828 * 5 4 3 10 10 N 1.40754 * 128.05782 * 179.85693 * 9 5 4 11 11 C 1.34780 * 120.00249 * 147.55939 * 10 9 5 12 12 O 1.21595 * 119.99382 * 354.66751 * 11 10 9 13 13 N 1.34770 * 120.00072 * 174.93411 * 11 10 9 14 14 C 1.39227 * 120.00129 * 184.93861 * 13 11 10 15 15 C 1.39485 * 119.82907 * 324.60766 * 14 13 11 16 16 C 1.36380 * 120.16462 * 179.72000 * 15 14 13 17 17 C 1.40864 * 119.82687 * 0.54731 * 16 15 14 18 18 C 1.41156 * 120.16410 * 179.70314 * 17 16 15 19 19 H 1.08001 * 120.00174 * 211.86156 * 18 17 16 20 20 C 1.39897 * 119.99791 * 31.86255 * 18 17 16 21 21 N 1.30881 * 119.99820 * 7.73256 * 20 18 17 22 22 Si 1.86797 * 119.99886 * 187.73028 * 20 18 17 23 23 H 1.48502 * 109.47402 * 60.00257 * 22 20 18 24 24 H 1.48497 * 109.47118 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47422 * 300.00229 * 22 20 18 26 26 C 1.40872 * 119.67740 * 359.72331 * 17 16 15 27 27 C 1.36371 * 119.82522 * 0.02562 * 26 17 16 28 28 H 1.08991 * 109.47444 * 276.22349 * 1 2 3 29 29 H 1.09003 * 109.46727 * 36.22914 * 1 2 3 30 30 H 1.08996 * 109.46842 * 156.21852 * 1 2 3 31 31 H 1.09001 * 115.55065 * 154.50000 * 6 5 4 32 32 H 1.08999 * 117.50122 * 359.97438 * 7 6 5 33 33 H 1.09001 * 117.49897 * 145.02452 * 7 6 5 34 34 H 1.09004 * 117.49950 * 214.97936 * 8 6 5 35 35 H 1.08994 * 117.50265 * 359.97438 * 8 6 5 36 36 H 0.97005 * 119.99993 * 327.56828 * 10 9 5 37 37 H 0.96999 * 120.00371 * 4.93782 * 13 11 10 38 38 H 1.07996 * 119.91905 * 359.97438 * 15 14 13 39 39 H 1.07999 * 120.08519 * 180.27628 * 16 15 14 40 40 H 0.97008 * 119.99423 * 179.97438 * 21 20 18 41 41 H 1.07993 * 120.09114 * 179.97438 * 26 17 16 42 42 H 1.08003 * 119.91773 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4544 0.7281 0.0005 5 6 3.6079 -0.6060 0.0069 6 6 4.9096 -1.3652 0.0157 7 6 6.1947 -0.5618 0.2252 8 6 5.8685 -1.1371 -1.1545 9 6 2.3566 -1.1352 0.0006 10 7 1.9891 -2.4939 0.0008 11 6 0.8587 -2.8863 0.6210 12 8 0.2074 -2.0843 1.2622 13 7 0.4532 -4.1687 0.5351 14 6 -0.7657 -4.5519 1.0882 15 6 -1.2089 -3.9578 2.2698 16 6 -2.4044 -4.3239 2.8144 17 6 -3.1867 -5.3130 2.1868 18 6 -4.4222 -5.7019 2.7477 19 1 -4.7716 -6.7174 2.6331 20 6 -5.1942 -4.7719 3.4521 21 7 -4.8489 -3.5095 3.4635 22 14 -6.7179 -5.3318 4.3764 23 1 -6.3335 -6.3314 5.4051 24 1 -7.3548 -4.1630 5.0348 25 1 -7.6771 -5.9460 3.4235 26 6 -2.7297 -5.9126 0.9967 27 6 -1.5345 -5.5324 0.4612 28 1 -0.3634 0.1114 1.0215 29 1 -0.3633 0.8290 -0.6074 30 1 -0.3633 -0.9404 -0.4144 31 1 4.8667 -2.3670 0.4432 32 1 6.0987 0.5160 0.3562 33 1 6.9975 -1.0349 0.7907 34 1 6.4567 -1.9886 -1.4967 35 1 5.5576 -0.4382 -1.9310 36 1 2.5495 -3.1480 -0.4455 37 1 1.0105 -4.8247 0.0879 38 1 -0.6058 -3.2030 2.7523 39 1 -2.7484 -3.8598 3.7269 40 1 -5.3844 -2.8646 3.9516 41 1 -3.3238 -6.6719 0.5102 42 1 -1.1826 -5.9914 -0.4509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137114286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:37 Heat of formation + Delta-G solvation = 89.514228 kcal Electronic energy + Delta-G solvation = -26834.906143 eV Core-core repulsion = 22977.413046 eV Total energy + Delta-G solvation = -3857.493097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.90424 -40.21216 -37.79367 -37.55068 -35.57284 -34.45994 -33.62452 -32.79214 -30.74739 -29.52304 -28.83103 -28.37006 -25.15187 -23.93422 -23.16529 -22.72241 -21.44908 -21.08414 -20.42130 -19.61337 -18.17538 -17.82781 -17.56435 -17.29773 -16.59145 -16.08776 -15.52006 -15.25937 -15.04884 -14.34514 -14.09211 -13.94770 -13.24521 -13.17898 -12.90809 -12.72172 -12.52008 -12.24880 -12.09283 -11.94921 -11.87910 -11.61675 -11.48795 -11.44935 -11.14540 -11.01032 -10.88032 -10.60240 -10.45292 -10.03239 -9.91503 -9.62393 -9.49113 -9.17200 -8.76269 -8.38234 -7.55390 -6.96308 -6.66997 -4.33081 1.30056 2.18858 2.45041 2.70368 3.03227 3.08692 3.10093 3.11336 3.18185 3.47389 3.59637 3.96158 4.07986 4.31360 4.38184 4.46365 4.57025 4.68418 4.78000 5.11642 5.23704 5.25810 5.50983 5.61739 5.65225 5.71686 5.73199 5.92395 6.05357 6.09491 6.33234 6.45825 6.52762 6.65975 6.76510 7.01825 7.09082 7.21917 7.28078 7.60406 7.74663 7.92993 8.05436 8.23709 8.29029 8.33137 8.63079 8.81390 8.89697 8.99528 10.26919 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024319 B = 0.002574 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.068925 B =10875.841527 C =11569.359311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.042 3.958 3 N -0.361 5.361 4 O 0.101 5.899 5 C -0.047 4.047 6 C -0.078 4.078 7 C -0.164 4.164 8 C -0.165 4.165 9 C 0.078 3.922 10 N -0.659 5.659 11 C 0.690 3.310 12 O -0.548 6.548 13 N -0.658 5.658 14 C 0.013 3.987 15 C -0.089 4.089 16 C -0.145 4.145 17 C 0.106 3.894 18 C -0.463 4.463 19 H 0.076 0.924 20 C 0.071 3.929 21 N -0.800 5.800 22 Si 0.912 3.088 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.209 4.209 27 C -0.108 4.108 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.406 0.594 37 H 0.392 0.608 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.280 0.720 41 H 0.096 0.904 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.098 2.175 -7.730 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.119 4.119 3 N -0.068 5.068 4 O 0.039 5.961 5 C -0.114 4.114 6 C -0.097 4.097 7 C -0.201 4.201 8 C -0.203 4.203 9 C -0.022 4.022 10 N -0.311 5.311 11 C 0.392 3.608 12 O -0.422 6.422 13 N -0.304 5.304 14 C -0.079 4.079 15 C -0.109 4.109 16 C -0.165 4.165 17 C 0.103 3.897 18 C -0.493 4.493 19 H 0.094 0.906 20 C -0.145 4.145 21 N -0.426 5.426 22 Si 0.737 3.263 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.229 4.229 27 C -0.128 4.128 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.150 0.850 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.242 0.758 37 H 0.225 0.775 38 H 0.127 0.873 39 H 0.139 0.861 40 H 0.091 0.909 41 H 0.115 0.885 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.125 4.442 -7.054 19.046 hybrid contribution -0.310 -1.672 -0.095 1.703 sum 16.815 2.771 -7.149 18.481 Atomic orbital electron populations 1.20213 0.84665 1.02536 1.04036 1.23484 0.99459 0.87081 1.01893 1.73816 0.89025 1.23320 1.20635 1.84804 1.21502 1.20876 1.68968 1.22633 0.95005 0.84158 1.09593 1.20264 0.84656 0.98876 1.05911 1.23040 0.96890 1.00756 0.99429 1.23127 1.01366 1.03864 0.91898 1.17674 0.91070 0.85633 1.07855 1.41835 1.26126 1.04573 1.58580 1.15972 0.80543 0.83394 0.80929 1.91002 1.55483 1.51950 1.43788 1.41992 1.21610 1.06852 1.59951 1.16989 0.87862 1.05337 0.97727 1.20612 0.97451 0.99097 0.93759 1.21051 0.92944 1.01324 1.01215 1.17691 0.92017 0.90447 0.89501 1.19473 1.02764 0.97549 1.29557 0.90582 1.25894 0.99389 0.94451 0.94787 1.69808 1.37328 1.02050 1.33456 0.86314 0.80972 0.79005 0.80049 1.18964 1.20390 1.19116 1.20624 0.97467 1.06405 0.98387 1.20032 0.95222 0.99336 0.98236 0.89058 0.92144 0.90000 0.84969 0.87756 0.87704 0.87668 0.88175 0.75796 0.77456 0.87298 0.86143 0.90871 0.88536 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 8.46 36.01 0.30 -0.65 16 2 C 0.04 0.67 7.01 -81.94 -0.57 0.10 16 3 N -0.36 -5.73 12.06 33.56 0.40 -5.33 16 4 O 0.10 1.39 11.00 16.53 0.18 1.58 16 5 C -0.05 -0.56 6.97 -35.16 -0.24 -0.81 16 6 C -0.08 -0.62 6.27 -91.78 -0.58 -1.20 16 7 C -0.16 -1.07 10.18 -26.73 -0.27 -1.34 16 8 C -0.17 -1.00 10.23 -26.73 -0.27 -1.27 16 9 C 0.08 1.10 6.76 -83.25 -0.56 0.54 16 10 N -0.66 -8.39 5.48 -13.99 -0.08 -8.47 16 11 C 0.69 11.63 7.67 -86.92 -0.67 10.96 16 12 O -0.55 -11.41 9.51 5.28 0.05 -11.36 16 13 N -0.66 -10.70 5.31 -14.10 -0.07 -10.77 16 14 C 0.01 0.28 6.31 -83.57 -0.53 -0.25 16 15 C -0.09 -2.14 8.62 -39.79 -0.34 -2.48 16 16 C -0.15 -3.81 8.58 -39.26 -0.34 -4.14 16 17 C 0.11 2.78 5.53 -106.80 -0.59 2.19 16 18 C -0.46 -12.15 9.04 -37.85 -0.34 -12.49 16 19 H 0.08 1.90 7.86 -52.49 -0.41 1.48 16 20 C 0.07 1.81 5.28 -17.34 -0.09 1.71 16 21 N -0.80 -21.13 10.89 55.55 0.60 -20.52 16 22 Si 0.91 18.84 29.57 -169.99 -5.03 13.81 16 23 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 26 C -0.21 -4.90 9.74 -39.26 -0.38 -5.29 16 27 C -0.11 -2.25 9.90 -39.79 -0.39 -2.65 16 28 H 0.09 1.67 7.53 -51.93 -0.39 1.28 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.46 6.44 -51.93 -0.33 1.12 16 31 H 0.13 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.10 0.74 8.02 -51.93 -0.42 0.32 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.41 3.53 8.85 -40.82 -0.36 3.17 16 37 H 0.39 4.71 8.83 -40.82 -0.36 4.35 16 38 H 0.11 2.65 6.20 -52.49 -0.33 2.33 16 39 H 0.12 3.31 6.34 -52.49 -0.33 2.98 16 40 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 41 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 42 H 0.09 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -30.94 356.88 -9.46 -40.39 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -5.87 Total: -17.06 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.86 Total: -45.09 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.23 Total: -9.79 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.94 -9.46 -40.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137114286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.908 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds