Wall clock time and date at job start Tue Mar 31 2020 15:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30174 * 126.80416 * 2 1 4 4 O 1.20899 * 111.73996 * 179.97438 * 3 2 1 5 5 C 1.34286 * 111.63119 * 359.72708 * 4 3 2 6 6 C 1.50699 * 126.82219 * 180.29872 * 5 4 3 7 7 C 1.52995 * 117.49928 * 8.79076 * 6 5 4 8 8 C 1.52998 * 117.49647 * 300.16534 * 6 5 4 9 9 C 1.35868 * 106.35621 * 0.43828 * 5 4 3 10 10 N 1.40754 * 128.05782 * 179.85693 * 9 5 4 11 11 C 1.34780 * 120.00249 * 147.55939 * 10 9 5 12 12 O 1.21595 * 119.99382 * 354.66751 * 11 10 9 13 13 N 1.34770 * 120.00072 * 174.93411 * 11 10 9 14 14 C 1.39227 * 120.00129 * 184.93861 * 13 11 10 15 15 C 1.39485 * 119.82907 * 324.60766 * 14 13 11 16 16 C 1.36380 * 120.16462 * 179.72000 * 15 14 13 17 17 C 1.40864 * 119.82687 * 0.54731 * 16 15 14 18 18 C 1.41156 * 120.16410 * 179.70314 * 17 16 15 19 19 H 1.08001 * 120.00174 * 211.86156 * 18 17 16 20 20 C 1.39897 * 119.99791 * 31.86255 * 18 17 16 21 21 N 1.30881 * 119.99820 * 7.73256 * 20 18 17 22 22 Si 1.86797 * 119.99886 * 187.73028 * 20 18 17 23 23 H 1.48502 * 109.47402 * 60.00257 * 22 20 18 24 24 H 1.48497 * 109.47118 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47422 * 300.00229 * 22 20 18 26 26 C 1.40872 * 119.67740 * 359.72331 * 17 16 15 27 27 C 1.36371 * 119.82522 * 0.02562 * 26 17 16 28 28 H 1.08991 * 109.47444 * 276.22349 * 1 2 3 29 29 H 1.09003 * 109.46727 * 36.22914 * 1 2 3 30 30 H 1.08996 * 109.46842 * 156.21852 * 1 2 3 31 31 H 1.09001 * 115.55065 * 154.50000 * 6 5 4 32 32 H 1.08999 * 117.50122 * 359.97438 * 7 6 5 33 33 H 1.09001 * 117.49897 * 145.02452 * 7 6 5 34 34 H 1.09004 * 117.49950 * 214.97936 * 8 6 5 35 35 H 1.08994 * 117.50265 * 359.97438 * 8 6 5 36 36 H 0.97005 * 119.99993 * 327.56828 * 10 9 5 37 37 H 0.96999 * 120.00371 * 4.93782 * 13 11 10 38 38 H 1.07996 * 119.91905 * 359.97438 * 15 14 13 39 39 H 1.07999 * 120.08519 * 180.27628 * 16 15 14 40 40 H 0.97008 * 119.99423 * 179.97438 * 21 20 18 41 41 H 1.07993 * 120.09114 * 179.97438 * 26 17 16 42 42 H 1.08003 * 119.91773 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4544 0.7281 0.0005 5 6 3.6079 -0.6060 0.0069 6 6 4.9096 -1.3652 0.0157 7 6 6.1947 -0.5618 0.2252 8 6 5.8685 -1.1371 -1.1545 9 6 2.3566 -1.1352 0.0006 10 7 1.9891 -2.4939 0.0008 11 6 0.8587 -2.8863 0.6210 12 8 0.2074 -2.0843 1.2622 13 7 0.4532 -4.1687 0.5351 14 6 -0.7657 -4.5519 1.0882 15 6 -1.2089 -3.9578 2.2698 16 6 -2.4044 -4.3239 2.8144 17 6 -3.1867 -5.3130 2.1868 18 6 -4.4222 -5.7019 2.7477 19 1 -4.7716 -6.7174 2.6331 20 6 -5.1942 -4.7719 3.4521 21 7 -4.8489 -3.5095 3.4635 22 14 -6.7179 -5.3318 4.3764 23 1 -6.3335 -6.3314 5.4051 24 1 -7.3548 -4.1630 5.0348 25 1 -7.6771 -5.9460 3.4235 26 6 -2.7297 -5.9126 0.9967 27 6 -1.5345 -5.5324 0.4612 28 1 -0.3634 0.1114 1.0215 29 1 -0.3633 0.8290 -0.6074 30 1 -0.3633 -0.9404 -0.4144 31 1 4.8667 -2.3670 0.4432 32 1 6.0987 0.5160 0.3562 33 1 6.9975 -1.0349 0.7907 34 1 6.4567 -1.9886 -1.4967 35 1 5.5576 -0.4382 -1.9310 36 1 2.5495 -3.1480 -0.4455 37 1 1.0105 -4.8247 0.0879 38 1 -0.6058 -3.2030 2.7523 39 1 -2.7484 -3.8598 3.7269 40 1 -5.3844 -2.8646 3.9516 41 1 -3.3238 -6.6719 0.5102 42 1 -1.1826 -5.9914 -0.4509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137114286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:36 Heat of formation + Delta-G solvation = 71.147042 kcal Electronic energy + Delta-G solvation = -26835.702604 eV Core-core repulsion = 22977.413046 eV Total energy + Delta-G solvation = -3858.289558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -46.06008 -41.62318 -39.38176 -38.28982 -36.91116 -36.03394 -35.06374 -34.32359 -31.93181 -31.36636 -30.55400 -29.66306 -26.90049 -24.77342 -24.50020 -23.24875 -23.14412 -22.66467 -21.79853 -20.79141 -19.55747 -19.18448 -18.93094 -18.71338 -17.89233 -17.13123 -17.03887 -16.63589 -16.21076 -15.81088 -15.67802 -15.05109 -14.82408 -14.47055 -14.30973 -14.20979 -13.93366 -13.82813 -13.63951 -13.29896 -13.19383 -12.82259 -12.72949 -12.57951 -12.43313 -12.34158 -12.28173 -11.78669 -11.73780 -11.59659 -11.34223 -11.29579 -10.96062 -10.62029 -10.47220 -9.46951 -9.41455 -8.74736 -8.52963 -6.27993 0.27583 0.85247 0.96808 1.17003 1.35502 1.39325 1.51175 1.52332 2.09901 2.16715 2.23820 2.82521 2.92412 3.06682 3.29115 3.30724 3.67514 3.74624 3.90722 4.06461 4.15693 4.42876 4.46674 4.53178 4.53354 4.59054 4.70123 4.84060 4.98292 5.01056 5.11192 5.13714 5.15412 5.17618 5.28855 5.32375 5.35611 5.43320 5.67101 5.77466 6.07179 6.12124 6.14112 6.39071 6.72422 6.97135 7.00349 7.04281 7.19226 7.53382 8.42213 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024319 B = 0.002574 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.068925 B =10875.841527 C =11569.359311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C 0.016 3.984 3 N -0.381 5.381 4 O 0.106 5.894 5 C -0.017 4.017 6 C -0.098 4.098 7 C -0.161 4.161 8 C -0.147 4.147 9 C 0.051 3.949 10 N -0.633 5.633 11 C 0.690 3.310 12 O -0.591 6.591 13 N -0.646 5.646 14 C 0.036 3.964 15 C -0.102 4.102 16 C -0.169 4.169 17 C 0.072 3.928 18 C -0.498 4.498 19 H 0.080 0.920 20 C 0.026 3.974 21 N -0.842 5.842 22 Si 0.985 3.015 23 H -0.259 1.259 24 H -0.275 1.275 25 H -0.258 1.258 26 C -0.214 4.214 27 C -0.100 4.100 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.153 0.847 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.430 0.570 37 H 0.419 0.581 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.283 0.717 41 H 0.111 0.889 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.765 0.609 -9.549 22.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.144 4.144 3 N -0.088 5.088 4 O 0.042 5.958 5 C -0.084 4.084 6 C -0.117 4.117 7 C -0.198 4.198 8 C -0.184 4.184 9 C -0.049 4.049 10 N -0.287 5.287 11 C 0.392 3.608 12 O -0.468 6.468 13 N -0.294 5.294 14 C -0.057 4.057 15 C -0.122 4.122 16 C -0.189 4.189 17 C 0.069 3.931 18 C -0.528 4.528 19 H 0.098 0.902 20 C -0.187 4.187 21 N -0.469 5.469 22 Si 0.806 3.194 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.182 1.182 26 C -0.234 4.234 27 C -0.121 4.121 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.170 0.830 32 H 0.113 0.887 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.112 0.888 36 H 0.270 0.730 37 H 0.256 0.744 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.129 0.871 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 19.866 2.850 -8.928 21.966 hybrid contribution -0.836 -1.100 0.354 1.427 sum 19.030 1.749 -8.575 20.946 Atomic orbital electron populations 1.19980 0.85695 1.02190 1.02495 1.23546 0.99336 0.88403 1.03091 1.73795 0.89683 1.23685 1.21598 1.84779 1.20642 1.22053 1.68305 1.23336 0.96034 0.83214 1.05823 1.20581 0.83153 0.99409 1.08559 1.23170 0.96173 1.00293 1.00205 1.23238 0.99634 1.04356 0.91158 1.17719 0.91475 0.85580 1.10117 1.41348 1.24999 1.04629 1.57720 1.16079 0.81147 0.83032 0.80574 1.91008 1.57083 1.53121 1.45573 1.41669 1.20487 1.07502 1.59762 1.16974 0.89026 1.03701 0.96047 1.20614 0.96928 0.99419 0.95238 1.20909 0.94314 1.02542 1.01148 1.18016 0.92612 0.91401 0.91059 1.19759 1.03545 0.98073 1.31426 0.90172 1.26795 1.02478 0.94195 0.95200 1.69922 1.38954 1.03272 1.34793 0.85207 0.76920 0.78577 0.78698 1.18303 1.19932 1.18182 1.20897 0.98654 1.06335 0.97543 1.20390 0.93928 0.98508 0.99242 0.91639 0.90865 0.91452 0.82982 0.88696 0.85565 0.84986 0.88769 0.73033 0.74355 0.88403 0.88923 0.90711 0.87063 0.84472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.61 8.46 71.24 0.60 -1.00 16 2 C 0.02 0.52 7.01 43.68 0.31 0.83 16 3 N -0.38 -12.09 12.06 -48.97 -0.59 -12.69 16 4 O 0.11 2.79 11.00 69.31 0.76 3.55 16 5 C -0.02 -0.37 6.97 25.14 0.18 -0.19 16 6 C -0.10 -1.21 6.27 -11.54 -0.07 -1.28 16 7 C -0.16 -1.52 10.18 30.59 0.31 -1.21 16 8 C -0.15 -1.16 10.23 30.60 0.31 -0.85 16 9 C 0.05 1.38 6.76 38.03 0.26 1.64 16 10 N -0.63 -14.75 5.48 -316.44 -1.73 -16.48 16 11 C 0.69 22.47 7.67 179.06 1.37 23.85 16 12 O -0.59 -25.15 9.51 -4.01 -0.04 -25.19 16 13 N -0.65 -19.44 5.31 -316.78 -1.68 -21.13 16 14 C 0.04 1.49 6.31 38.57 0.24 1.73 16 15 C -0.10 -5.04 8.62 22.14 0.19 -4.85 16 16 C -0.17 -9.33 8.58 22.48 0.19 -9.14 16 17 C 0.07 3.87 5.53 -21.28 -0.12 3.76 16 18 C -0.50 -27.02 9.04 23.39 0.21 -26.81 16 19 H 0.08 4.10 7.86 -2.91 -0.02 4.08 16 20 C 0.03 1.34 5.28 85.24 0.45 1.79 16 21 N -0.84 -46.90 10.89 21.82 0.24 -46.66 16 22 Si 0.98 39.63 29.57 68.60 2.03 41.66 16 23 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 24 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 26 C -0.21 -9.94 9.74 22.48 0.22 -9.72 16 27 C -0.10 -3.96 9.90 22.13 0.22 -3.74 16 28 H 0.06 2.58 7.53 -2.39 -0.02 2.56 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.07 2.49 6.44 -2.39 -0.02 2.48 16 31 H 0.15 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.11 8.02 -2.39 -0.02 1.09 16 33 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.43 5.86 8.85 -92.70 -0.82 5.04 16 37 H 0.42 8.32 8.83 -92.71 -0.82 7.50 16 38 H 0.10 5.01 6.20 -2.91 -0.02 4.99 16 39 H 0.09 5.52 6.34 -2.91 -0.02 5.50 16 40 H 0.28 14.52 8.30 -92.70 -0.77 13.75 16 41 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 42 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -72.67 356.88 3.32 -69.35 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -0.54 Total: 32.78 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 4.88 Total: -25.20 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -3.77 Total: -96.96 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.72 Total: -21.64 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -72.67 3.32 -69.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137114286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.500 kcal (2) G-P(sol) polarization free energy of solvation -72.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds