Wall clock time and date at job start Tue Mar 31 2020 15:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30708 * 126.21739 * 2 1 4 4 N 1.28570 * 110.01486 * 179.74096 * 3 2 1 5 5 C 1.31517 * 109.56025 * 0.39220 * 4 3 2 6 6 C 1.47809 * 126.52052 * 179.88687 * 5 4 3 7 7 C 1.39693 * 119.99294 * 359.67971 * 6 5 4 8 8 C 1.37597 * 120.01121 * 180.02562 * 7 6 5 9 9 C 1.39781 * 119.99285 * 0.02562 * 8 7 6 10 10 C 1.47582 * 120.01523 * 179.97438 * 9 8 7 11 11 O 1.21491 * 119.99772 * 5.20111 * 10 9 8 12 12 O 1.34740 * 120.00354 * 185.20444 * 10 9 8 13 13 C 1.45200 * 117.00217 * 184.84344 * 12 10 9 14 14 C 1.53002 * 109.47239 * 183.83993 * 13 12 10 15 15 C 1.50697 * 115.54823 * 294.96830 * 14 13 12 16 16 H 1.08004 * 119.99915 * 114.76775 * 15 14 13 17 17 C 1.37873 * 119.99808 * 294.47875 * 15 14 13 18 18 N 1.31520 * 119.99907 * 174.28166 * 17 15 14 19 19 Si 1.86800 * 120.00195 * 354.28661 * 17 15 14 20 20 H 1.48508 * 109.46982 * 93.47859 * 19 17 15 21 21 H 1.48503 * 109.47196 * 213.47920 * 19 17 15 22 22 H 1.48496 * 109.47085 * 333.48037 * 19 17 15 23 23 C 1.53003 * 117.49399 * 80.63312 * 14 13 12 24 24 C 1.52998 * 117.49763 * 149.29289 * 14 13 12 25 25 C 1.39789 * 119.97721 * 0.25271 * 9 8 7 26 26 C 1.37603 * 119.98472 * 359.49103 * 25 9 8 27 27 N 1.35399 * 126.22028 * 179.97438 * 2 1 3 28 28 H 0.97000 * 127.04307 * 0.02562 * 27 2 1 29 29 H 1.08999 * 109.46825 * 270.02387 * 1 2 3 30 30 H 1.09000 * 109.47139 * 30.02152 * 1 2 3 31 31 H 1.08997 * 109.46855 * 150.02395 * 1 2 3 32 32 H 1.08003 * 119.99250 * 0.05396 * 7 6 5 33 33 H 1.08011 * 120.00260 * 179.97438 * 8 7 6 34 34 H 1.09003 * 109.47273 * 63.83643 * 13 12 10 35 35 H 1.09003 * 109.46792 * 303.84233 * 13 12 10 36 36 H 0.97000 * 119.99710 * 179.97438 * 18 17 15 37 37 H 1.09001 * 117.49488 * 214.99920 * 23 14 13 38 38 H 1.08994 * 117.50289 * 0.02850 * 23 14 13 39 39 H 1.08997 * 117.49873 * 359.97438 * 24 14 13 40 40 H 1.08998 * 117.49944 * 144.97697 * 24 14 13 41 41 H 1.07996 * 120.00784 * 179.72429 * 25 9 8 42 42 H 1.08002 * 119.99569 * 180.27469 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0545 0.0000 4 7 3.5139 0.6958 0.0055 5 6 3.5910 -0.6171 0.0008 6 6 4.8283 -1.4257 0.0021 7 6 6.0747 -0.7948 0.0022 8 6 7.2268 -1.5471 0.0030 9 6 7.1500 -2.9428 0.0031 10 6 8.3854 -3.7502 0.0033 11 8 9.4671 -3.2053 0.0988 12 8 8.3137 -5.0915 -0.1024 13 6 9.5589 -5.8294 0.0133 14 6 9.2943 -7.3172 -0.2267 15 6 8.4193 -7.9949 0.7960 16 1 7.4518 -8.3797 0.5089 17 6 8.8563 -8.1292 2.0967 18 7 8.0506 -8.6181 3.0140 19 14 10.5928 -7.6166 2.5562 20 1 10.5820 -6.2142 3.0449 21 1 11.1059 -8.5097 3.6259 22 1 11.4710 -7.7181 1.3630 23 6 9.1810 -7.7893 -1.6777 24 6 10.4204 -8.1431 -0.8517 25 6 5.9026 -3.5737 -0.0029 26 6 4.7510 -2.8205 0.0017 27 7 2.3071 -1.0923 0.0005 28 1 2.0277 -2.0212 0.0006 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 6.1340 0.2836 0.0022 33 1 8.1905 -1.0592 0.0026 34 1 9.9721 -5.6904 1.0123 35 1 10.2689 -5.4624 -0.7279 36 1 8.3582 -8.7129 3.9290 37 1 8.4737 -8.5904 -1.8924 38 1 9.2954 -7.0403 -2.4611 39 1 11.3495 -7.6265 -1.0923 40 1 10.5286 -9.1766 -0.5230 41 1 5.8426 -4.6520 -0.0073 42 1 3.7871 -3.3077 0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151651601.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:26 Heat of formation + Delta-G solvation = 20.817544 kcal Electronic energy + Delta-G solvation = -26203.409295 eV Core-core repulsion = 22342.937286 eV Total energy + Delta-G solvation = -3860.472009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.14179 -41.66145 -39.98131 -38.72444 -37.06743 -35.10565 -34.30966 -34.27824 -32.30139 -31.89208 -29.33172 -28.48772 -27.35413 -25.74980 -24.01965 -23.48787 -23.17436 -22.15947 -21.62823 -21.06989 -19.51263 -18.86091 -18.79953 -17.79338 -17.58585 -17.20726 -17.17070 -16.61277 -16.02698 -15.77946 -15.36304 -15.03907 -14.92955 -14.68430 -14.62649 -14.30624 -14.02416 -13.97444 -13.62592 -13.54662 -13.29271 -13.02045 -12.87192 -12.76125 -12.32900 -12.28149 -12.13074 -11.99106 -11.82040 -11.71611 -11.54367 -11.41718 -11.05661 -10.99362 -10.64141 -10.40738 -10.20948 -9.54040 -8.31953 -6.35223 -0.86245 0.20994 0.68399 1.27818 1.34036 1.35915 1.43887 1.56163 1.60533 1.79980 2.31814 2.65508 2.92768 2.96343 3.23922 3.50752 3.59757 3.68543 3.77702 3.93061 3.96224 4.05605 4.09555 4.12456 4.25830 4.39442 4.41877 4.53287 4.59218 4.69283 4.70077 4.87441 4.88046 4.89108 4.96345 5.03282 5.13864 5.14737 5.19630 5.24667 5.45541 5.49496 5.57011 5.65312 6.08048 6.28966 6.62890 6.70720 7.31002 7.51263 8.83169 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018729 B = 0.002563 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.644621 B =10922.451853 C =11359.595244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.203 3.797 3 N -0.340 5.340 4 N -0.303 5.303 5 C 0.209 3.791 6 C 0.013 3.987 7 C -0.087 4.087 8 C -0.051 4.051 9 C -0.125 4.125 10 C 0.495 3.505 11 O -0.540 6.540 12 O -0.335 6.335 13 C 0.109 3.891 14 C -0.043 4.043 15 C -0.472 4.472 16 H 0.041 0.959 17 C 0.028 3.972 18 N -0.941 5.941 19 Si 0.910 3.090 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.218 1.218 23 C -0.155 4.155 24 C -0.170 4.170 25 C -0.055 4.055 26 C -0.103 4.103 27 N -0.563 5.563 28 H 0.449 0.551 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.265 0.735 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.146 0.854 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.969 13.591 -8.600 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.065 4.065 3 N -0.182 5.182 4 N -0.144 5.144 5 C -0.057 4.057 6 C 0.010 3.990 7 C -0.107 4.107 8 C -0.069 4.069 9 C -0.127 4.127 10 C 0.342 3.658 11 O -0.432 6.432 12 O -0.250 6.250 13 C 0.035 3.965 14 C -0.043 4.043 15 C -0.510 4.510 16 H 0.059 0.941 17 C -0.170 4.170 18 N -0.581 5.581 19 Si 0.735 3.265 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.140 1.140 23 C -0.192 4.192 24 C -0.207 4.207 25 C -0.074 4.074 26 C -0.123 4.123 27 N -0.178 5.178 28 H 0.293 0.707 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.173 0.827 33 H 0.166 0.834 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.164 0.836 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.242 15.257 -8.414 21.294 hybrid contribution 0.543 -1.775 0.916 2.070 sum -11.699 13.482 -7.498 19.361 Atomic orbital electron populations 1.20563 0.79785 1.06543 1.05895 1.25754 0.98699 0.82057 1.00026 1.74229 0.96478 1.26062 1.21412 1.74486 1.13011 1.08693 1.18219 1.22722 0.85690 0.91296 1.06036 1.17802 0.88756 0.91902 1.00510 1.21173 0.89618 1.01447 0.98483 1.21260 1.00200 0.90880 0.94591 1.19371 0.90885 0.93544 1.08894 1.21775 0.89884 0.81884 0.72241 1.90765 1.31346 1.73441 1.47662 1.86627 1.38327 1.18499 1.81525 1.22863 0.82582 0.91064 0.99979 1.19239 1.01192 0.88917 0.94993 1.20347 1.02130 1.35790 0.92739 0.94092 1.25633 1.00533 0.94635 0.96233 1.70014 1.37525 1.47829 1.02718 0.86318 0.82761 0.77382 0.80004 1.21265 1.21562 1.13956 1.22862 1.00237 1.03093 0.92993 1.23146 0.92689 1.00711 1.04149 1.21513 0.90548 1.01652 0.93638 1.21259 0.99782 0.91222 1.00034 1.44008 1.05367 1.12251 1.56223 0.70706 0.87659 0.87945 0.87201 0.82739 0.83370 0.94010 0.90737 0.92580 0.89485 0.88049 0.88257 0.89294 0.83576 0.81771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.51 71.24 0.75 0.43 16 2 C 0.20 3.07 8.28 137.95 1.14 4.22 16 3 N -0.34 -8.29 12.20 -50.12 -0.61 -8.90 16 4 N -0.30 -8.01 11.91 -51.10 -0.61 -8.62 16 5 C 0.21 4.33 7.86 136.35 1.07 5.41 16 6 C 0.01 0.27 5.88 -20.04 -0.12 0.15 16 7 C -0.09 -1.92 9.68 22.47 0.22 -1.70 16 8 C -0.05 -1.28 9.57 22.49 0.22 -1.07 16 9 C -0.13 -3.70 5.88 -20.06 -0.12 -3.82 16 10 C 0.50 18.61 7.88 70.29 0.55 19.16 16 11 O -0.54 -22.10 16.06 19.87 0.32 -21.78 16 12 O -0.33 -13.87 9.40 -56.51 -0.53 -14.40 16 13 C 0.11 4.62 5.01 71.98 0.36 4.98 16 14 C -0.04 -1.87 1.06 -52.93 -0.06 -1.93 16 15 C -0.47 -25.75 9.33 25.60 0.24 -25.51 16 16 H 0.04 2.48 8.06 -2.91 -0.02 2.45 16 17 C 0.03 1.57 5.47 84.65 0.46 2.03 16 18 N -0.94 -57.17 13.96 21.45 0.30 -56.87 16 19 Si 0.91 43.14 24.98 68.60 1.71 44.85 16 20 H -0.29 -13.81 7.03 99.48 0.70 -13.11 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 22 H -0.22 -9.09 5.72 99.48 0.57 -8.53 16 23 C -0.15 -5.63 9.96 30.62 0.30 -5.32 16 24 C -0.17 -6.32 8.01 30.62 0.25 -6.08 16 25 C -0.06 -1.40 9.60 22.50 0.22 -1.18 16 26 C -0.10 -1.92 9.69 22.47 0.22 -1.70 16 27 N -0.56 -7.50 6.12 -179.04 -1.09 -8.60 16 28 H 0.45 2.35 8.19 -92.71 -0.76 1.59 16 29 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.15 3.11 7.86 -2.91 -0.02 3.09 16 33 H 0.15 3.57 7.65 -2.90 -0.02 3.54 16 34 H 0.04 1.93 5.08 -2.39 -0.01 1.91 16 35 H 0.07 2.81 7.96 -2.39 -0.02 2.79 16 36 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.10 3.14 8.14 -2.39 -0.02 3.13 16 39 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.15 3.93 7.61 -2.91 -0.02 3.91 16 42 H 0.16 1.75 7.26 -2.91 -0.02 1.73 16 Total: -1.00 -77.32 363.09 5.36 -71.96 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.17 Total: 14.29 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 5.70 Total: -11.93 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -2.02 Total: -82.99 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.21 Total: -36.18 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.71 Total: 44.85 kcal Total: -77.32 5.36 -71.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151651601.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.779 kcal (2) G-P(sol) polarization free energy of solvation -77.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds