Wall clock time and date at job start Tue Mar 31 2020 14:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38804 * 120.38670 * 2 1 4 4 C 1.39462 * 118.38034 * 179.97438 * 3 2 1 5 5 C 1.48473 * 120.51266 * 180.02562 * 4 3 2 6 6 O 1.21478 * 119.99675 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00049 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00240 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.46783 * 34.99218 * 8 7 5 10 10 C 1.53000 * 109.47369 * 154.99867 * 8 7 5 11 11 C 1.50700 * 109.46751 * 294.99698 * 10 8 7 12 12 H 1.08001 * 120.00624 * 0.02562 * 11 10 8 13 13 C 1.37882 * 119.99683 * 180.02562 * 11 10 8 14 14 N 1.31519 * 119.99939 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99951 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47271 * 89.99972 * 15 13 11 17 17 H 1.48498 * 109.47291 * 209.99717 * 15 13 11 18 18 H 1.48505 * 109.47237 * 330.00119 * 15 13 11 19 19 C 1.50703 * 109.47065 * 275.00247 * 8 7 5 20 20 C 1.38235 * 120.00292 * 139.99706 * 19 8 7 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 8 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 319.96999 * 19 8 7 25 25 N 1.33085 * 118.97667 * 0.27541 * 4 3 2 26 26 C 1.32088 * 120.67129 * 359.43961 * 25 4 3 27 27 O 1.35468 * 119.11497 * 180.26217 * 26 25 4 28 28 N 1.32133 * 120.38902 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.46683 * 89.99796 * 1 2 3 30 30 H 1.08995 * 109.47230 * 209.99756 * 1 2 3 31 31 H 1.09001 * 109.47035 * 330.00087 * 1 2 3 32 32 H 1.07997 * 120.80992 * 359.95995 * 3 2 1 33 33 H 0.96997 * 120.00034 * 359.97438 * 7 5 4 34 34 H 1.08995 * 109.46916 * 54.99829 * 10 8 7 35 35 H 1.09003 * 109.46852 * 175.00197 * 10 8 7 36 36 H 0.97001 * 119.99717 * 180.02562 * 14 13 11 37 37 H 1.08001 * 119.99730 * 359.97438 * 20 19 8 38 38 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 40 40 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.00455 * 0.02562 * 24 19 8 42 42 H 0.96700 * 114.00461 * 270.30029 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2092 1.1974 0.0000 4 6 3.6030 1.1485 0.0005 5 6 4.4011 2.4005 0.0011 6 8 3.8405 3.4782 0.0016 7 7 5.7475 2.3413 0.0012 8 6 6.5351 3.5765 0.0023 9 1 6.0205 4.3349 0.5923 10 6 7.9116 3.3032 0.6118 11 6 7.7531 2.9302 2.0632 12 1 6.7691 2.8914 2.5066 13 6 8.8646 2.6383 2.8253 14 7 10.0630 2.6860 2.2855 15 14 8.6682 2.1752 4.6242 16 1 8.5081 0.7035 4.7419 17 1 9.8723 2.6040 5.3801 18 1 7.4679 2.8497 5.1809 19 6 6.7008 4.0680 -1.4127 20 6 6.6176 5.4199 -1.6891 21 6 6.7701 5.8706 -2.9869 22 6 7.0066 4.9696 -4.0083 23 6 7.0912 3.6179 -3.7316 24 6 6.9364 3.1669 -2.4341 25 7 4.2065 -0.0376 -0.0045 26 6 3.4996 -1.1533 0.0011 27 8 4.1466 -2.3435 0.0010 28 7 2.1755 -1.1398 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6889 2.1437 -0.0006 33 1 6.1951 1.4807 0.0011 34 1 8.3899 2.4834 0.0760 35 1 8.5285 4.1984 0.5320 36 1 10.8448 2.4803 2.8216 37 1 6.4335 6.1238 -0.8910 38 1 6.7047 6.9267 -3.2030 39 1 7.1213 5.3213 -5.0229 40 1 7.2756 2.9139 -4.5296 41 1 7.0014 2.1107 -2.2182 42 1 4.3348 -2.6890 -0.8823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153425202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:56 Heat of formation + Delta-G solvation = -3.668228 kcal Electronic energy + Delta-G solvation = -27069.047734 eV Core-core repulsion = 23207.513942 eV Total energy + Delta-G solvation = -3861.533792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.45890 -39.64194 -38.48755 -37.50505 -35.33209 -34.68862 -32.73360 -32.03046 -31.08620 -30.48853 -28.91764 -28.78295 -25.64966 -24.33636 -23.54299 -22.33484 -21.98191 -20.83862 -19.84830 -19.00458 -18.29177 -17.23519 -16.62176 -16.17537 -16.09818 -15.65708 -15.48708 -14.98028 -14.61281 -14.50934 -14.24414 -14.12143 -13.73506 -13.32709 -13.09430 -12.95282 -12.76732 -12.65278 -12.53889 -12.16730 -12.12406 -11.59944 -11.34733 -11.15760 -10.96958 -10.75710 -10.74897 -10.61180 -10.53888 -10.11794 -9.80962 -9.57083 -9.36745 -9.25999 -8.61124 -8.52980 -8.44913 -8.23388 -6.08503 -4.11904 0.38116 0.65073 1.73080 1.76730 2.69949 2.94413 3.28948 3.30420 3.36132 3.39891 3.67819 3.84030 4.16757 4.41019 4.46410 4.64996 4.75899 5.07085 5.20368 5.21463 5.23697 5.25752 5.29080 5.33874 5.47645 5.50693 5.60128 5.86843 5.89745 5.96876 6.10406 6.30560 6.38691 6.50927 6.54337 6.75933 6.80984 6.81789 7.05556 7.25137 7.36260 7.47333 7.55476 7.71028 7.87446 7.98582 8.24350 8.48996 8.93037 9.53370 11.02017 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.007424 B = 0.004996 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3770.875164 B = 5603.498187 C = 8132.885847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.194 3.806 3 C -0.185 4.185 4 C 0.167 3.833 5 C 0.563 3.437 6 O -0.532 6.532 7 N -0.670 5.670 8 C 0.181 3.819 9 H 0.091 0.909 10 C 0.024 3.976 11 C -0.521 4.521 12 H 0.057 0.943 13 C 0.063 3.937 14 N -0.891 5.891 15 Si 0.891 3.109 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.073 4.073 20 C -0.106 4.106 21 C -0.123 4.123 22 C -0.133 4.133 23 C -0.125 4.125 24 C -0.108 4.108 25 N -0.501 5.501 26 C 0.497 3.503 27 O -0.454 6.454 28 N -0.520 5.520 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.165 0.835 33 H 0.414 0.586 34 H 0.026 0.974 35 H 0.038 0.962 36 H 0.262 0.738 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.420 -3.304 -11.048 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.047 3.953 3 C -0.208 4.208 4 C 0.019 3.981 5 C 0.345 3.655 6 O -0.408 6.408 7 N -0.318 5.318 8 C 0.078 3.922 9 H 0.109 0.891 10 C -0.013 4.013 11 C -0.560 4.560 12 H 0.075 0.925 13 C -0.139 4.139 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.075 4.075 20 C -0.125 4.125 21 C -0.141 4.141 22 C -0.152 4.152 23 C -0.143 4.143 24 C -0.126 4.126 25 N -0.230 5.230 26 C 0.192 3.808 27 O -0.257 6.257 28 N -0.247 5.247 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.182 0.818 33 H 0.251 0.749 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -14.040 -3.446 -10.397 17.807 hybrid contribution 0.086 -0.231 0.574 0.625 sum -13.953 -3.677 -9.823 17.456 Atomic orbital electron populations 1.20838 0.86884 1.04569 1.04044 1.21628 0.97659 0.86634 0.89405 1.22803 0.94685 1.01399 1.01903 1.21721 0.91980 0.91654 0.92731 1.17729 0.83121 0.86449 0.78201 1.90765 1.71180 1.28001 1.50861 1.45912 1.04592 1.11496 1.69807 1.20409 0.95636 0.85498 0.90700 0.89101 1.19407 0.87945 0.98390 0.95588 1.21103 0.93041 1.47057 0.94754 0.92471 1.24959 0.95238 0.95308 0.98438 1.69955 0.97840 1.48741 1.36429 0.86607 0.77628 0.78834 0.85061 1.20598 1.21168 1.19887 1.20492 0.97083 0.93641 0.96235 1.21015 0.99656 0.95218 0.96600 1.21043 1.00778 0.99200 0.93041 1.21009 1.01905 0.93531 0.98718 1.21044 1.01104 0.95632 0.96497 1.20942 0.99614 0.99582 0.92465 1.67924 1.42208 0.98208 1.14612 1.20095 0.83845 0.85329 0.91499 1.84765 1.76117 1.30582 1.34219 1.67703 1.09431 1.31670 1.15894 0.89267 0.89590 0.89467 0.81783 0.74948 0.95535 0.94431 0.92841 0.86039 0.86521 0.86792 0.86714 0.86499 0.72987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.22 36.01 0.37 -0.37 16 2 C 0.19 2.21 6.83 -82.25 -0.56 1.65 16 3 C -0.18 -2.37 9.40 -38.92 -0.37 -2.73 16 4 C 0.17 2.63 6.79 -82.65 -0.56 2.07 16 5 C 0.56 10.24 7.79 -12.04 -0.09 10.15 16 6 O -0.53 -10.59 16.08 5.39 0.09 -10.50 16 7 N -0.67 -12.64 4.03 -55.68 -0.22 -12.87 16 8 C 0.18 3.68 2.11 -69.08 -0.15 3.53 16 9 H 0.09 1.96 7.44 -51.93 -0.39 1.58 16 10 C 0.02 0.58 4.49 -27.88 -0.13 0.45 16 11 C -0.52 -13.97 8.84 -34.44 -0.30 -14.27 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.73 13.29 55.43 0.74 -25.00 16 15 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 C -0.07 -1.34 4.91 -104.62 -0.51 -1.86 16 20 C -0.11 -1.79 9.67 -39.59 -0.38 -2.18 16 21 C -0.12 -1.78 10.05 -39.59 -0.40 -2.18 16 22 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 23 C -0.12 -1.82 10.05 -39.58 -0.40 -2.22 16 24 C -0.11 -1.81 9.32 -39.58 -0.37 -2.18 16 25 N -0.50 -7.91 9.73 -11.29 -0.11 -8.02 16 26 C 0.50 7.09 8.71 -91.36 -0.80 6.29 16 27 O -0.45 -5.55 13.64 -18.10 -0.25 -5.80 16 28 N -0.52 -6.87 10.38 -10.95 -0.11 -6.98 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.46 8.10 -51.93 -0.42 0.04 16 32 H 0.16 1.84 7.73 -52.49 -0.41 1.43 16 33 H 0.41 7.75 7.99 -40.82 -0.33 7.42 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.12 1.94 8.04 -52.49 -0.42 1.52 16 38 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.12 1.89 7.72 -52.49 -0.41 1.49 16 42 H 0.41 2.68 9.06 45.56 0.41 3.10 16 LS Contribution 371.53 15.07 5.60 5.60 Total: -1.00 -33.25 371.53 -8.89 -42.14 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -4.45 Total: 9.39 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -5.14 Total: -4.45 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.29 Total: -52.86 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.16 Total: -16.30 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.25 -8.89 -42.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153425202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.467 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds