Wall clock time and date at job start Tue Mar 31 2020 14:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38804 * 120.38670 * 2 1 4 4 C 1.39462 * 118.38034 * 179.97438 * 3 2 1 5 5 C 1.48473 * 120.51266 * 180.02562 * 4 3 2 6 6 O 1.21478 * 119.99675 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00049 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00240 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.46783 * 34.99218 * 8 7 5 10 10 C 1.53000 * 109.47369 * 154.99867 * 8 7 5 11 11 C 1.50700 * 109.46751 * 294.99698 * 10 8 7 12 12 H 1.08001 * 120.00624 * 0.02562 * 11 10 8 13 13 C 1.37882 * 119.99683 * 180.02562 * 11 10 8 14 14 N 1.31519 * 119.99939 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99951 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47271 * 89.99972 * 15 13 11 17 17 H 1.48498 * 109.47291 * 209.99717 * 15 13 11 18 18 H 1.48505 * 109.47237 * 330.00119 * 15 13 11 19 19 C 1.50703 * 109.47065 * 275.00247 * 8 7 5 20 20 C 1.38235 * 120.00292 * 139.99706 * 19 8 7 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 8 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 319.96999 * 19 8 7 25 25 N 1.33085 * 118.97667 * 0.27541 * 4 3 2 26 26 C 1.32088 * 120.67129 * 359.43961 * 25 4 3 27 27 O 1.35468 * 119.11497 * 180.26217 * 26 25 4 28 28 N 1.32133 * 120.38902 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.46683 * 89.99796 * 1 2 3 30 30 H 1.08995 * 109.47230 * 209.99756 * 1 2 3 31 31 H 1.09001 * 109.47035 * 330.00087 * 1 2 3 32 32 H 1.07997 * 120.80992 * 359.95995 * 3 2 1 33 33 H 0.96997 * 120.00034 * 359.97438 * 7 5 4 34 34 H 1.08995 * 109.46916 * 54.99829 * 10 8 7 35 35 H 1.09003 * 109.46852 * 175.00197 * 10 8 7 36 36 H 0.97001 * 119.99717 * 180.02562 * 14 13 11 37 37 H 1.08001 * 119.99730 * 359.97438 * 20 19 8 38 38 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 40 40 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.00455 * 0.02562 * 24 19 8 42 42 H 0.96700 * 114.00461 * 270.30029 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2092 1.1974 0.0000 4 6 3.6030 1.1485 0.0005 5 6 4.4011 2.4005 0.0011 6 8 3.8405 3.4782 0.0016 7 7 5.7475 2.3413 0.0012 8 6 6.5351 3.5765 0.0023 9 1 6.0205 4.3349 0.5923 10 6 7.9116 3.3032 0.6118 11 6 7.7531 2.9302 2.0632 12 1 6.7691 2.8914 2.5066 13 6 8.8646 2.6383 2.8253 14 7 10.0630 2.6860 2.2855 15 14 8.6682 2.1752 4.6242 16 1 8.5081 0.7035 4.7419 17 1 9.8723 2.6040 5.3801 18 1 7.4679 2.8497 5.1809 19 6 6.7008 4.0680 -1.4127 20 6 6.6176 5.4199 -1.6891 21 6 6.7701 5.8706 -2.9869 22 6 7.0066 4.9696 -4.0083 23 6 7.0912 3.6179 -3.7316 24 6 6.9364 3.1669 -2.4341 25 7 4.2065 -0.0376 -0.0045 26 6 3.4996 -1.1533 0.0011 27 8 4.1466 -2.3435 0.0010 28 7 2.1755 -1.1398 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6889 2.1437 -0.0006 33 1 6.1951 1.4807 0.0011 34 1 8.3899 2.4834 0.0760 35 1 8.5285 4.1984 0.5320 36 1 10.8448 2.4803 2.8216 37 1 6.4335 6.1238 -0.8910 38 1 6.7047 6.9267 -3.2030 39 1 7.1213 5.3213 -5.0229 40 1 7.2756 2.9139 -4.5296 41 1 7.0014 2.1107 -2.2182 42 1 4.3348 -2.6890 -0.8823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153425202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:55 Heat of formation + Delta-G solvation = -28.956072 kcal Electronic energy + Delta-G solvation = -27070.144297 eV Core-core repulsion = 23207.513942 eV Total energy + Delta-G solvation = -3862.630355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.53465 -41.02883 -39.76479 -38.48930 -36.91857 -35.74722 -34.74221 -33.05096 -32.46267 -31.70494 -30.58341 -29.68671 -27.20673 -25.76309 -24.54864 -23.82708 -23.37902 -22.12801 -21.29344 -20.09143 -19.43452 -18.75786 -18.15508 -17.61567 -17.18911 -17.07001 -16.68175 -16.43755 -16.30564 -15.76647 -15.53361 -15.13721 -14.88494 -14.51676 -14.41950 -14.20206 -14.15616 -13.71123 -13.62944 -13.48632 -13.42011 -12.99392 -12.97362 -12.67110 -12.53090 -12.36051 -12.18111 -11.90924 -11.75653 -11.64659 -11.57408 -11.37178 -10.62383 -10.58215 -10.42313 -10.12186 -9.76894 -9.55139 -8.23298 -6.32984 -0.74529 -0.32791 0.48480 0.54808 1.36053 1.37056 1.47136 1.52901 1.80659 2.02120 2.36886 2.52516 2.82755 2.95806 3.10828 3.35540 3.60297 3.77885 3.93678 4.01239 4.19780 4.23556 4.27895 4.31554 4.41928 4.61331 4.72739 4.74658 4.76563 4.76742 4.87288 5.08888 5.15091 5.19477 5.26901 5.38316 5.51083 5.58071 5.59899 5.63327 5.74398 5.84267 6.12638 6.17854 6.40361 6.47887 6.71993 6.78621 7.01347 7.35602 8.87484 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.007424 B = 0.004996 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3770.875164 B = 5603.498187 C = 8132.885847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.204 3.796 3 C -0.178 4.178 4 C 0.144 3.856 5 C 0.563 3.437 6 O -0.554 6.554 7 N -0.672 5.672 8 C 0.197 3.803 9 H 0.070 0.930 10 C 0.038 3.962 11 C -0.531 4.531 12 H 0.050 0.950 13 C 0.014 3.986 14 N -0.923 5.923 15 Si 0.952 3.048 16 H -0.275 1.275 17 H -0.279 1.279 18 H -0.271 1.271 19 C -0.099 4.099 20 C -0.127 4.127 21 C -0.121 4.121 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.124 4.124 25 N -0.527 5.527 26 C 0.492 3.508 27 O -0.462 6.462 28 N -0.524 5.524 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.180 0.820 33 H 0.412 0.588 34 H 0.009 0.991 35 H 0.012 0.988 36 H 0.265 0.735 37 H 0.119 0.881 38 H 0.147 0.853 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.112 0.888 42 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.378 -3.606 -12.305 20.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.056 3.944 3 C -0.201 4.201 4 C -0.002 4.002 5 C 0.347 3.653 6 O -0.432 6.432 7 N -0.320 5.320 8 C 0.092 3.908 9 H 0.088 0.912 10 C 0.000 4.000 11 C -0.569 4.569 12 H 0.069 0.931 13 C -0.185 4.185 14 N -0.563 5.563 15 Si 0.778 3.222 16 H -0.201 1.201 17 H -0.204 1.204 18 H -0.196 1.196 19 C -0.100 4.100 20 C -0.146 4.146 21 C -0.139 4.139 22 C -0.144 4.144 23 C -0.143 4.143 24 C -0.142 4.142 25 N -0.256 5.256 26 C 0.187 3.813 27 O -0.269 6.269 28 N -0.251 5.251 29 H 0.130 0.870 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.198 0.802 33 H 0.249 0.751 34 H 0.027 0.973 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.137 0.863 38 H 0.165 0.835 39 H 0.170 0.830 40 H 0.162 0.838 41 H 0.130 0.870 42 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -15.996 -3.762 -11.673 20.157 hybrid contribution 0.644 -0.157 0.879 1.101 sum -15.352 -3.919 -10.794 19.172 Atomic orbital electron populations 1.21039 0.83213 1.05941 1.05830 1.22390 0.99649 0.85413 0.86946 1.23032 0.93367 1.02850 1.00855 1.21396 0.92868 0.90634 0.95294 1.18068 0.82702 0.87345 0.77162 1.90730 1.71435 1.29185 1.51876 1.45823 1.05127 1.10764 1.70287 1.19925 0.93179 0.85579 0.92077 0.91202 1.19138 0.89905 0.96323 0.94604 1.21371 0.92727 1.46654 0.96121 0.93137 1.25725 0.94967 0.95328 1.02502 1.70058 0.98511 1.49744 1.37980 0.85639 0.77743 0.78571 0.80257 1.20119 1.20392 1.19584 1.20356 0.99721 0.94780 0.95184 1.21187 1.00652 0.94628 0.98120 1.21412 0.99407 1.01086 0.91959 1.21484 0.99694 0.92908 1.00305 1.21409 0.99899 0.96937 0.96033 1.21039 1.00455 0.99254 0.93439 1.67812 1.43148 0.98666 1.15956 1.20253 0.84366 0.85362 0.91312 1.84716 1.76062 1.29762 1.36322 1.67869 1.08810 1.32345 1.16088 0.86981 0.88917 0.87362 0.80233 0.75128 0.97254 0.96972 0.92649 0.86323 0.83477 0.82970 0.83832 0.86956 0.70463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 10.22 71.24 0.73 -0.34 16 2 C 0.20 4.21 6.83 42.65 0.29 4.50 16 3 C -0.18 -4.36 9.40 22.70 0.21 -4.15 16 4 C 0.14 4.60 6.79 41.98 0.29 4.88 16 5 C 0.56 21.32 7.79 86.97 0.68 22.00 16 6 O -0.55 -22.80 16.08 -3.65 -0.06 -22.86 16 7 N -0.67 -26.88 4.03 -448.38 -1.80 -28.68 16 8 C 0.20 8.51 2.11 44.25 0.09 8.60 16 9 H 0.07 3.26 7.44 -2.39 -0.02 3.24 16 10 C 0.04 1.93 4.49 29.85 0.13 2.06 16 11 C -0.53 -29.64 8.84 25.60 0.23 -29.41 16 12 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 13 C 0.01 0.78 5.46 84.66 0.46 1.24 16 14 N -0.92 -54.80 13.29 21.45 0.28 -54.52 16 15 Si 0.95 44.88 29.54 68.60 2.03 46.91 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 19 C -0.10 -3.79 4.91 -19.87 -0.10 -3.88 16 20 C -0.13 -4.37 9.67 22.27 0.22 -4.16 16 21 C -0.12 -3.30 10.05 22.27 0.22 -3.08 16 22 C -0.13 -3.13 10.05 22.27 0.22 -2.90 16 23 C -0.12 -3.44 10.05 22.27 0.22 -3.22 16 24 C -0.12 -4.22 9.32 22.27 0.21 -4.01 16 25 N -0.53 -16.90 9.73 -302.69 -2.94 -19.84 16 26 C 0.49 13.81 8.71 180.61 1.57 15.38 16 27 O -0.46 -11.05 13.64 -87.66 -1.20 -12.25 16 28 N -0.52 -13.05 10.38 -301.46 -3.13 -16.18 16 29 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.11 0.73 8.10 -2.39 -0.02 0.71 16 32 H 0.18 3.74 7.73 -2.91 -0.02 3.72 16 33 H 0.41 16.51 7.99 -92.71 -0.74 15.77 16 34 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.12 3.98 8.04 -2.91 -0.02 3.96 16 38 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 39 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 40 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 41 H 0.11 3.81 7.72 -2.91 -0.02 3.79 16 42 H 0.43 5.34 9.06 -74.06 -0.67 4.67 16 Total: -1.00 -74.16 371.53 -1.48 -75.64 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: -0.34 Total: 28.26 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 5.68 Total: 3.52 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -7.59 Total: -119.22 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.25 Total: -35.10 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -74.16 -1.48 -75.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153425202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.683 kcal (2) G-P(sol) polarization free energy of solvation -74.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds