Wall clock time and date at job start Tue Mar 31 2020 14:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38796 * 120.39261 * 2 1 4 4 C 1.39468 * 118.38509 * 180.02562 * 3 2 1 5 5 C 1.48469 * 120.51533 * 180.02562 * 4 3 2 6 6 O 1.21483 * 119.99198 * 359.97438 * 5 4 3 7 7 N 1.34768 * 119.99953 * 180.02562 * 5 4 3 8 8 C 1.46503 * 119.99599 * 174.97039 * 7 5 4 9 9 H 1.09000 * 109.47732 * 326.38396 * 8 7 5 10 10 C 1.53001 * 109.47128 * 206.38155 * 8 7 5 11 11 C 1.50700 * 109.47016 * 65.32813 * 10 8 7 12 12 H 1.08003 * 120.00256 * 355.55701 * 11 10 8 13 13 C 1.37876 * 120.00202 * 175.55278 * 11 10 8 14 14 N 1.31518 * 120.00238 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99997 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.46949 * 89.99572 * 15 13 11 17 17 H 1.48502 * 109.47469 * 209.99848 * 15 13 11 18 18 H 1.48503 * 109.47111 * 330.00096 * 15 13 11 19 19 C 1.50698 * 109.47100 * 86.38719 * 8 7 5 20 20 C 1.38238 * 120.00067 * 39.72063 * 19 8 7 21 21 C 1.38239 * 119.99654 * 179.80978 * 20 19 8 22 22 C 1.38233 * 120.00226 * 0.40459 * 21 20 19 23 23 C 1.38233 * 119.99809 * 359.85034 * 22 21 20 24 24 C 1.38230 * 120.00195 * 359.96130 * 23 22 21 25 25 N 1.33085 * 118.97345 * 359.75053 * 4 3 2 26 26 C 1.32089 * 120.67170 * 0.50663 * 25 4 3 27 27 O 1.35469 * 119.11007 * 179.76141 * 26 25 4 28 28 N 1.32135 * 120.38489 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.46997 * 269.98036 * 1 2 3 30 30 H 1.09003 * 109.46399 * 29.97717 * 1 2 3 31 31 H 1.09000 * 109.47049 * 149.97903 * 1 2 3 32 32 H 1.07999 * 120.80656 * 0.02562 * 3 2 1 33 33 H 0.96995 * 120.00084 * 354.97051 * 7 5 4 34 34 H 1.08993 * 109.47221 * 185.33054 * 10 8 7 35 35 H 1.09003 * 109.47403 * 305.33202 * 10 8 7 36 36 H 0.96999 * 120.00132 * 179.97438 * 14 13 11 37 37 H 1.08001 * 119.99942 * 0.02562 * 20 19 8 38 38 H 1.07998 * 119.99876 * 180.22827 * 21 20 19 39 39 H 1.08002 * 119.99892 * 179.83189 * 22 21 20 40 40 H 1.08007 * 119.99939 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.00005 * 180.02562 * 24 23 22 42 42 H 0.96704 * 113.99730 * 269.72169 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2093 1.1972 0.0000 4 6 3.6031 1.1484 -0.0005 5 6 4.4013 2.4002 0.0000 6 8 3.8406 3.4779 0.0005 7 7 5.7477 2.3409 -0.0011 8 6 6.5349 3.5714 -0.1118 9 1 6.0059 4.2858 -0.7425 10 6 7.8959 3.2520 -0.7337 11 6 7.7020 2.7820 -2.1523 12 1 6.7050 2.6489 -2.5457 13 6 8.7974 2.5220 -2.9482 14 7 8.6282 2.1124 -4.1865 15 14 10.5218 2.7516 -2.2679 16 1 10.9824 1.4830 -1.6482 17 1 11.4431 3.1270 -3.3704 18 1 10.5109 3.8272 -1.2440 19 6 6.7359 4.1642 1.2591 20 6 6.9908 3.3390 2.3384 21 6 7.1790 3.8831 3.5952 22 6 7.1041 5.2518 3.7741 23 6 6.8440 6.0766 2.6957 24 6 6.6596 5.5328 1.4383 25 7 4.2066 -0.0378 0.0040 26 6 3.4996 -1.1535 -0.0010 27 8 4.1466 -2.3437 -0.0011 28 7 2.1754 -1.1399 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3632 0.8903 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6890 2.1436 0.0004 33 1 6.1954 1.4835 0.0715 34 1 8.5166 4.1479 -0.7293 35 1 8.3849 2.4683 -0.1550 36 1 9.3988 1.9298 -4.7465 37 1 7.0463 2.2694 2.1992 38 1 7.3818 3.2387 4.4378 39 1 7.2485 5.6767 4.7565 40 1 6.7851 7.1459 2.8356 41 1 6.4569 6.1773 0.5957 42 1 4.3340 -2.6894 -0.8846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153425308.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:01 Heat of formation + Delta-G solvation = 0.194525 kcal Electronic energy + Delta-G solvation = -27085.980348 eV Core-core repulsion = 23224.614057 eV Total energy + Delta-G solvation = -3861.366290 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.42718 -39.70309 -38.53892 -37.46081 -35.42814 -34.66286 -32.68252 -32.00362 -31.19642 -30.57295 -29.34792 -28.82399 -25.81925 -24.31569 -23.50513 -22.36965 -21.80211 -20.80441 -19.89859 -18.96609 -18.26948 -17.26493 -16.94351 -16.38056 -16.07007 -15.67159 -15.47853 -15.05190 -14.64827 -14.35707 -14.28160 -14.10558 -13.70805 -13.37263 -13.14254 -13.07776 -12.74000 -12.71303 -12.61465 -12.41749 -12.13392 -12.00003 -11.32956 -11.27820 -11.13420 -10.78715 -10.70966 -10.56316 -10.30954 -10.14162 -9.88903 -9.53187 -9.39420 -9.26377 -8.67965 -8.64457 -8.59914 -8.34870 -6.12806 -4.12808 0.41006 0.68672 1.63810 1.68168 2.72006 2.94166 3.25138 3.30385 3.33981 3.36415 3.70330 3.86879 4.08837 4.37002 4.45947 4.68291 4.77445 5.09271 5.13784 5.15978 5.20867 5.23249 5.24442 5.29497 5.40693 5.51011 5.61655 5.78200 5.79576 5.96722 6.01207 6.18073 6.26877 6.36652 6.55369 6.66970 6.72075 6.73895 6.89464 6.99874 7.22844 7.27723 7.30456 7.62031 7.71999 7.94482 8.40666 8.45235 8.91613 9.47838 10.99960 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.008557 B = 0.004628 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3271.212206 B = 6048.352963 C = 8148.242129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.195 3.805 3 C -0.185 4.185 4 C 0.167 3.833 5 C 0.567 3.433 6 O -0.530 6.530 7 N -0.672 5.672 8 C 0.193 3.807 9 H 0.096 0.904 10 C -0.015 4.015 11 C -0.521 4.521 12 H 0.075 0.925 13 C 0.072 3.928 14 N -0.898 5.898 15 Si 0.875 3.125 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.264 1.264 19 C -0.079 4.079 20 C -0.109 4.109 21 C -0.124 4.124 22 C -0.132 4.132 23 C -0.122 4.122 24 C -0.106 4.106 25 N -0.500 5.500 26 C 0.498 3.502 27 O -0.457 6.457 28 N -0.520 5.520 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.164 0.836 33 H 0.413 0.587 34 H 0.039 0.961 35 H 0.020 0.980 36 H 0.264 0.736 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.360 -1.588 11.753 16.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.047 3.953 3 C -0.208 4.208 4 C 0.019 3.981 5 C 0.349 3.651 6 O -0.406 6.406 7 N -0.320 5.320 8 C 0.089 3.911 9 H 0.114 0.886 10 C -0.053 4.053 11 C -0.559 4.559 12 H 0.093 0.907 13 C -0.130 4.130 14 N -0.536 5.536 15 Si 0.702 3.298 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.188 1.188 19 C -0.080 4.080 20 C -0.127 4.127 21 C -0.142 4.142 22 C -0.150 4.150 23 C -0.140 4.140 24 C -0.124 4.124 25 N -0.228 5.228 26 C 0.193 3.807 27 O -0.260 6.260 28 N -0.247 5.247 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.182 0.818 33 H 0.250 0.750 34 H 0.057 0.943 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.141 0.859 42 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -11.078 -1.765 12.149 16.536 hybrid contribution 1.028 0.095 -0.267 1.066 sum -10.051 -1.670 11.882 15.652 Atomic orbital electron populations 1.20835 0.86890 1.04536 1.04055 1.21622 0.97657 0.86629 0.89410 1.22792 0.94658 1.01405 1.01936 1.21664 0.91943 0.91609 0.92855 1.17696 0.82982 0.86505 0.77929 1.90769 1.71169 1.28051 1.50581 1.45812 1.04730 1.11621 1.69886 1.20126 0.94555 0.85374 0.91056 0.88575 1.19914 0.90607 0.97709 0.97052 1.20981 0.95149 1.45288 0.94447 0.90694 1.24968 0.98999 0.94386 0.94629 1.69901 1.30760 1.45748 1.07191 0.86858 0.84774 0.79189 0.78987 1.20190 1.21303 1.18846 1.20513 0.97470 0.93864 0.96125 1.20965 0.99613 0.99758 0.92408 1.21059 1.00985 0.95177 0.97012 1.21032 1.01648 0.93808 0.98518 1.21062 1.00616 0.99421 0.92935 1.21033 0.99502 0.94600 0.97279 1.67919 1.42212 0.98193 1.14518 1.20089 0.83833 0.85330 0.91414 1.84706 1.76124 1.30583 1.34611 1.67707 1.09441 1.31663 1.15868 0.89287 0.89464 0.89592 0.81799 0.74998 0.94326 0.96155 0.92622 0.86426 0.86610 0.86704 0.86424 0.85899 0.72598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.22 36.01 0.37 -0.40 16 2 C 0.19 2.27 6.83 -82.25 -0.56 1.71 16 3 C -0.18 -2.42 9.40 -38.92 -0.37 -2.79 16 4 C 0.17 2.68 6.79 -82.65 -0.56 2.12 16 5 C 0.57 10.34 7.79 -12.05 -0.09 10.25 16 6 O -0.53 -10.53 16.11 5.38 0.09 -10.45 16 7 N -0.67 -12.50 4.00 -55.68 -0.22 -12.72 16 8 C 0.19 3.78 2.10 -69.08 -0.14 3.63 16 9 H 0.10 2.03 7.47 -51.93 -0.39 1.64 16 10 C -0.02 -0.34 3.59 -27.88 -0.10 -0.44 16 11 C -0.52 -13.90 9.40 -34.44 -0.32 -14.23 16 12 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -26.70 13.96 55.43 0.77 -25.92 16 15 Si 0.87 20.84 27.56 -169.99 -4.68 16.16 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.26 -6.05 6.42 56.52 0.36 -5.68 16 19 C -0.08 -1.38 4.93 -104.62 -0.52 -1.89 16 20 C -0.11 -1.76 9.33 -39.58 -0.37 -2.13 16 21 C -0.12 -1.75 10.05 -39.58 -0.40 -2.15 16 22 C -0.13 -1.75 10.05 -39.59 -0.40 -2.15 16 23 C -0.12 -1.70 10.05 -39.59 -0.40 -2.10 16 24 C -0.11 -1.70 9.67 -39.59 -0.38 -2.09 16 25 N -0.50 -8.07 9.73 -11.29 -0.11 -8.18 16 26 C 0.50 7.29 8.71 -91.36 -0.80 6.50 16 27 O -0.46 -5.75 13.64 -18.10 -0.25 -5.99 16 28 N -0.52 -7.05 10.38 -10.95 -0.11 -7.16 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.16 1.88 7.73 -52.49 -0.41 1.47 16 33 H 0.41 7.55 8.01 -40.82 -0.33 7.22 16 34 H 0.04 0.87 6.89 -51.93 -0.36 0.52 16 35 H 0.02 0.44 7.79 -51.93 -0.40 0.04 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.12 1.82 7.71 -52.49 -0.40 1.42 16 38 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 39 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 41 H 0.12 1.87 8.04 -52.49 -0.42 1.45 16 42 H 0.41 3.21 9.06 45.56 0.41 3.62 16 LS Contribution 367.91 15.07 5.54 5.54 Total: -1.00 -33.53 367.91 -8.53 -42.07 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -4.42 Total: 10.90 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -5.14 Total: -4.24 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.33 Total: -53.99 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.16 Total: -16.44 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.68 Total: 16.16 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.53 -8.53 -42.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153425308.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.261 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds