Wall clock time and date at job start Tue Mar 31 2020 14:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38796 * 120.39261 * 2 1 4 4 C 1.39468 * 118.38509 * 180.02562 * 3 2 1 5 5 C 1.48469 * 120.51533 * 180.02562 * 4 3 2 6 6 O 1.21483 * 119.99198 * 359.97438 * 5 4 3 7 7 N 1.34768 * 119.99953 * 180.02562 * 5 4 3 8 8 C 1.46503 * 119.99599 * 174.97039 * 7 5 4 9 9 H 1.09000 * 109.47732 * 326.38396 * 8 7 5 10 10 C 1.53001 * 109.47128 * 206.38155 * 8 7 5 11 11 C 1.50700 * 109.47016 * 65.32813 * 10 8 7 12 12 H 1.08003 * 120.00256 * 355.55701 * 11 10 8 13 13 C 1.37876 * 120.00202 * 175.55278 * 11 10 8 14 14 N 1.31518 * 120.00238 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 119.99997 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.46949 * 89.99572 * 15 13 11 17 17 H 1.48502 * 109.47469 * 209.99848 * 15 13 11 18 18 H 1.48503 * 109.47111 * 330.00096 * 15 13 11 19 19 C 1.50698 * 109.47100 * 86.38719 * 8 7 5 20 20 C 1.38238 * 120.00067 * 39.72063 * 19 8 7 21 21 C 1.38239 * 119.99654 * 179.80978 * 20 19 8 22 22 C 1.38233 * 120.00226 * 0.40459 * 21 20 19 23 23 C 1.38233 * 119.99809 * 359.85034 * 22 21 20 24 24 C 1.38230 * 120.00195 * 359.96130 * 23 22 21 25 25 N 1.33085 * 118.97345 * 359.75053 * 4 3 2 26 26 C 1.32089 * 120.67170 * 0.50663 * 25 4 3 27 27 O 1.35469 * 119.11007 * 179.76141 * 26 25 4 28 28 N 1.32135 * 120.38489 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.46997 * 269.98036 * 1 2 3 30 30 H 1.09003 * 109.46399 * 29.97717 * 1 2 3 31 31 H 1.09000 * 109.47049 * 149.97903 * 1 2 3 32 32 H 1.07999 * 120.80656 * 0.02562 * 3 2 1 33 33 H 0.96995 * 120.00084 * 354.97051 * 7 5 4 34 34 H 1.08993 * 109.47221 * 185.33054 * 10 8 7 35 35 H 1.09003 * 109.47403 * 305.33202 * 10 8 7 36 36 H 0.96999 * 120.00132 * 179.97438 * 14 13 11 37 37 H 1.08001 * 119.99942 * 0.02562 * 20 19 8 38 38 H 1.07998 * 119.99876 * 180.22827 * 21 20 19 39 39 H 1.08002 * 119.99892 * 179.83189 * 22 21 20 40 40 H 1.08007 * 119.99939 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.00005 * 180.02562 * 24 23 22 42 42 H 0.96704 * 113.99730 * 269.72169 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2093 1.1972 0.0000 4 6 3.6031 1.1484 -0.0005 5 6 4.4013 2.4002 0.0000 6 8 3.8406 3.4779 0.0005 7 7 5.7477 2.3409 -0.0011 8 6 6.5349 3.5714 -0.1118 9 1 6.0059 4.2858 -0.7425 10 6 7.8959 3.2520 -0.7337 11 6 7.7020 2.7820 -2.1523 12 1 6.7050 2.6489 -2.5457 13 6 8.7974 2.5220 -2.9482 14 7 8.6282 2.1124 -4.1865 15 14 10.5218 2.7516 -2.2679 16 1 10.9824 1.4830 -1.6482 17 1 11.4431 3.1270 -3.3704 18 1 10.5109 3.8272 -1.2440 19 6 6.7359 4.1642 1.2591 20 6 6.9908 3.3390 2.3384 21 6 7.1790 3.8831 3.5952 22 6 7.1041 5.2518 3.7741 23 6 6.8440 6.0766 2.6957 24 6 6.6596 5.5328 1.4383 25 7 4.2066 -0.0378 0.0040 26 6 3.4996 -1.1535 -0.0010 27 8 4.1466 -2.3437 -0.0011 28 7 2.1754 -1.1399 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3632 0.8903 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6890 2.1436 0.0004 33 1 6.1954 1.4835 0.0715 34 1 8.5166 4.1479 -0.7293 35 1 8.3849 2.4683 -0.1550 36 1 9.3988 1.9298 -4.7465 37 1 7.0463 2.2694 2.1992 38 1 7.3818 3.2387 4.4378 39 1 7.2485 5.6767 4.7565 40 1 6.7851 7.1459 2.8356 41 1 6.4569 6.1773 0.5957 42 1 4.3340 -2.6894 -0.8846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153425308.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:00 Heat of formation + Delta-G solvation = -26.098231 kcal Electronic energy + Delta-G solvation = -27087.120487 eV Core-core repulsion = 23224.614057 eV Total energy + Delta-G solvation = -3862.506430 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.53885 -41.05615 -39.78301 -38.48266 -36.96092 -35.75246 -34.70102 -33.07106 -32.56449 -31.71851 -31.00265 -29.69887 -27.31365 -25.68468 -24.54448 -23.63837 -23.28744 -22.12799 -21.32259 -20.09101 -19.43627 -19.08597 -18.27206 -17.66883 -17.26253 -16.97319 -16.64933 -16.38279 -16.25143 -15.77447 -15.57222 -15.13386 -15.00474 -14.62169 -14.44176 -14.29731 -14.17834 -13.96548 -13.64714 -13.62872 -13.42460 -13.04322 -12.99328 -12.50824 -12.40556 -12.35190 -12.00126 -11.83215 -11.78889 -11.74823 -11.59016 -11.45086 -10.78668 -10.58495 -10.43904 -10.14992 -9.78039 -9.57852 -8.29290 -6.33913 -0.75256 -0.33566 0.46316 0.53740 1.36017 1.38105 1.48628 1.51448 1.75856 2.03837 2.34777 2.53120 2.81645 2.93831 3.06334 3.34463 3.59615 3.77181 3.86838 3.99389 4.18563 4.21845 4.24498 4.31009 4.37281 4.52583 4.69933 4.73129 4.74133 4.77020 4.85916 4.96517 5.11126 5.16008 5.19559 5.26268 5.41055 5.53578 5.56037 5.62953 5.63120 5.80373 6.15398 6.22821 6.36982 6.44152 6.70548 6.72545 6.99318 7.29984 8.87011 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.008557 B = 0.004628 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3271.212206 B = 6048.352963 C = 8148.242129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.204 3.796 3 C -0.179 4.179 4 C 0.143 3.857 5 C 0.564 3.436 6 O -0.553 6.553 7 N -0.674 5.674 8 C 0.202 3.798 9 H 0.069 0.931 10 C -0.006 4.006 11 C -0.519 4.519 12 H 0.032 0.968 13 C 0.013 3.987 14 N -0.947 5.947 15 Si 0.943 3.057 16 H -0.266 1.266 17 H -0.286 1.286 18 H -0.246 1.246 19 C -0.101 4.101 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.121 4.121 24 C -0.125 4.125 25 N -0.526 5.526 26 C 0.491 3.509 27 O -0.462 6.462 28 N -0.524 5.524 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.180 0.820 33 H 0.413 0.587 34 H 0.040 0.960 35 H 0.030 0.970 36 H 0.266 0.734 37 H 0.115 0.885 38 H 0.143 0.857 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.120 0.880 42 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.667 -1.205 14.598 18.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.055 3.945 3 C -0.202 4.202 4 C -0.003 4.003 5 C 0.348 3.652 6 O -0.431 6.431 7 N -0.322 5.322 8 C 0.098 3.902 9 H 0.087 0.913 10 C -0.044 4.044 11 C -0.557 4.557 12 H 0.051 0.949 13 C -0.184 4.184 14 N -0.587 5.587 15 Si 0.767 3.233 16 H -0.191 1.191 17 H -0.212 1.212 18 H -0.170 1.170 19 C -0.102 4.102 20 C -0.142 4.142 21 C -0.143 4.143 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.144 4.144 25 N -0.255 5.255 26 C 0.186 3.814 27 O -0.268 6.268 28 N -0.251 5.251 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.113 0.887 32 H 0.198 0.802 33 H 0.249 0.751 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.133 0.867 38 H 0.161 0.839 39 H 0.169 0.831 40 H 0.165 0.835 41 H 0.138 0.862 42 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -11.384 -1.390 14.999 18.881 hybrid contribution 0.979 -0.048 -1.149 1.510 sum -10.405 -1.439 13.850 17.382 Atomic orbital electron populations 1.21039 0.83168 1.06059 1.05732 1.22399 0.99686 0.85412 0.86957 1.23035 0.93404 1.02862 1.00915 1.21425 0.92915 0.90722 0.95270 1.18045 0.82804 0.87284 0.77059 1.90730 1.71476 1.29171 1.51713 1.45782 1.05143 1.11223 1.70055 1.19772 0.92727 0.85287 0.92413 0.91255 1.19767 0.92520 0.97605 0.94509 1.21173 0.93293 1.44602 0.96661 0.94949 1.25866 1.03627 0.94154 0.94774 1.70056 1.32118 1.47662 1.08896 0.85766 0.79010 0.79940 0.78602 1.19115 1.21224 1.16991 1.20315 1.00079 0.94760 0.95048 1.21064 1.00346 0.99638 0.93119 1.21408 0.99870 0.96228 0.96748 1.21488 0.99534 0.93369 0.99866 1.21413 0.99307 1.01148 0.91965 1.21196 1.00397 0.94103 0.98663 1.67809 1.43153 0.98660 1.15870 1.20265 0.84389 0.85386 0.91315 1.84664 1.76072 1.29760 1.36333 1.67871 1.08805 1.32346 1.16075 0.87214 0.87275 0.88724 0.80241 0.75071 0.94213 0.95177 0.92535 0.86682 0.83898 0.83092 0.83526 0.86178 0.70510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 10.22 71.24 0.73 -0.44 16 2 C 0.20 4.44 6.83 42.65 0.29 4.74 16 3 C -0.18 -4.61 9.40 22.70 0.21 -4.40 16 4 C 0.14 4.72 6.79 41.98 0.29 5.01 16 5 C 0.56 21.67 7.79 86.97 0.68 22.35 16 6 O -0.55 -23.01 16.11 -3.66 -0.06 -23.07 16 7 N -0.67 -26.53 4.00 -448.38 -1.79 -28.32 16 8 C 0.20 8.32 2.10 44.24 0.09 8.41 16 9 H 0.07 3.16 7.47 -2.39 -0.02 3.14 16 10 C -0.01 -0.29 3.59 29.85 0.11 -0.18 16 11 C -0.52 -29.00 9.40 25.60 0.24 -28.76 16 12 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 13 C 0.01 0.75 5.47 84.65 0.46 1.21 16 14 N -0.95 -58.43 13.96 21.45 0.30 -58.13 16 15 Si 0.94 43.29 27.56 68.60 1.89 45.18 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 17 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 18 H -0.25 -10.53 6.42 99.48 0.64 -9.89 16 19 C -0.10 -3.57 4.93 -19.87 -0.10 -3.67 16 20 C -0.12 -3.89 9.33 22.27 0.21 -3.68 16 21 C -0.12 -3.17 10.05 22.27 0.22 -2.95 16 22 C -0.12 -2.85 10.05 22.27 0.22 -2.63 16 23 C -0.12 -3.04 10.05 22.27 0.22 -2.82 16 24 C -0.13 -3.99 9.67 22.27 0.22 -3.77 16 25 N -0.53 -17.53 9.73 -302.69 -2.95 -20.47 16 26 C 0.49 14.43 8.71 180.61 1.57 16.01 16 27 O -0.46 -11.60 13.64 -87.68 -1.20 -12.79 16 28 N -0.52 -13.70 10.38 -301.46 -3.13 -16.83 16 29 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.11 0.82 8.10 -2.39 -0.02 0.80 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.18 3.95 7.73 -2.91 -0.02 3.92 16 33 H 0.41 16.02 8.01 -92.71 -0.74 15.28 16 34 H 0.04 1.81 6.89 -2.39 -0.02 1.79 16 35 H 0.03 1.32 7.79 -2.39 -0.02 1.30 16 36 H 0.27 15.36 8.31 -92.71 -0.77 14.58 16 37 H 0.12 3.57 7.71 -2.91 -0.02 3.55 16 38 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 39 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 41 H 0.12 3.74 8.04 -2.91 -0.02 3.72 16 42 H 0.43 6.69 9.06 -74.05 -0.67 6.02 16 Total: -1.00 -75.74 367.91 -1.67 -77.41 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: -0.41 Total: 32.60 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 5.67 Total: 4.41 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -7.57 Total: -123.75 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -1.25 Total: -35.86 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.89 Total: 45.18 kcal Total: -75.74 -1.67 -77.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153425308.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.315 kcal (2) G-P(sol) polarization free energy of solvation -75.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds