Wall clock time and date at job start Tue Mar 31 2020 14:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38343 * 120.75010 * 2 1 4 4 C 1.39099 * 119.10027 * 180.28860 * 3 2 1 5 5 N 1.39002 * 119.71035 * 179.70405 * 4 3 2 6 6 C 1.46510 * 119.99414 * 359.97438 * 5 4 3 7 7 H 1.08995 * 109.47216 * 35.00222 * 6 5 4 8 8 C 1.53002 * 109.46461 * 155.00074 * 6 5 4 9 9 C 1.50700 * 109.47197 * 294.99925 * 8 6 5 10 10 H 1.08001 * 120.00240 * 0.02562 * 9 8 6 11 11 C 1.37882 * 120.00095 * 180.02562 * 9 8 6 12 12 N 1.31512 * 119.99550 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00138 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47067 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47256 * 119.99702 * 13 11 9 16 16 H 1.48507 * 109.47031 * 239.99902 * 13 11 9 17 17 C 1.50694 * 109.47264 * 275.00020 * 6 5 4 18 18 C 1.38235 * 119.99891 * 319.72608 * 17 6 5 19 19 C 1.38237 * 120.00031 * 179.81016 * 18 17 6 20 20 C 1.38239 * 119.99824 * 0.39860 * 19 18 17 21 21 C 1.38238 * 120.00133 * 359.85917 * 20 19 18 22 22 C 1.38233 * 119.99715 * 359.95221 * 21 20 19 23 23 N 1.32431 * 120.58606 * 359.68630 * 4 3 2 24 24 C 1.31936 * 121.62338 * 0.02562 * 23 4 3 25 25 C 1.38066 * 120.85773 * 359.97438 * 24 23 4 26 26 N 1.48003 * 120.33831 * 180.02562 * 25 24 23 27 27 O 1.21804 * 120.00308 * 143.32472 * 26 25 24 28 28 O 1.21800 * 119.99790 * 323.04173 * 26 25 24 29 29 H 1.08999 * 109.47202 * 264.66902 * 1 2 3 30 30 H 1.09006 * 109.46618 * 24.65840 * 1 2 3 31 31 H 1.08991 * 109.47329 * 144.65776 * 1 2 3 32 32 H 1.08004 * 120.45054 * 359.97438 * 3 2 1 33 33 H 0.96997 * 120.00493 * 179.97438 * 5 4 3 34 34 H 1.08999 * 109.47502 * 55.00452 * 8 6 5 35 35 H 1.09006 * 109.46802 * 175.00321 * 8 6 5 36 36 H 0.97005 * 119.99708 * 179.97438 * 12 11 9 37 37 H 1.08003 * 120.00487 * 0.02562 * 18 17 6 38 38 H 1.07997 * 120.00332 * 180.23100 * 19 18 17 39 39 H 1.08001 * 119.99909 * 179.83106 * 20 19 18 40 40 H 1.07994 * 120.00024 * 179.97438 * 21 20 19 41 41 H 1.07993 * 120.00308 * 179.97438 * 22 21 20 42 42 H 1.08005 * 119.57114 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2143 1.1889 0.0000 4 6 3.6047 1.1489 -0.0061 5 7 4.3281 2.3358 -0.0124 6 6 3.6257 3.6216 -0.0132 7 1 2.7152 3.5386 0.5802 8 6 4.5312 4.6975 0.5897 9 6 4.7865 4.3835 2.0414 10 1 4.3474 3.5043 2.4891 11 6 5.5809 5.2188 2.7980 12 7 6.1161 6.2891 2.2526 13 14 5.8981 4.8292 4.5971 14 1 5.1874 3.5784 4.9655 15 1 7.3562 4.6534 4.8160 16 1 5.4021 5.9465 5.4404 17 6 3.2704 3.9991 -1.4281 18 6 4.1721 3.7723 -2.4511 19 6 3.8446 4.1150 -3.7497 20 6 2.6187 4.6920 -4.0241 21 6 1.7192 4.9237 -3.0003 22 6 2.0451 4.5774 -1.7024 23 7 4.2455 -0.0101 -0.0056 24 6 3.5970 -1.1591 0.0001 25 6 2.2168 -1.1932 0.0064 26 7 1.5011 -2.4887 0.0133 27 8 0.4689 -2.6108 0.6483 28 8 1.9415 -3.4312 -0.6201 29 1 -0.3633 -0.0955 1.0232 30 1 -0.3633 0.9340 -0.4288 31 1 -0.3633 -0.8382 -0.5944 32 1 1.6940 2.1354 -0.0004 33 1 5.2978 2.3129 -0.0163 34 1 5.4782 4.7194 0.0506 35 1 4.0443 5.6694 0.5084 36 1 6.6747 6.8770 2.7850 37 1 5.1310 3.3242 -2.2364 38 1 4.5475 3.9344 -4.5495 39 1 2.3640 4.9623 -5.0382 40 1 0.7617 5.3749 -3.2146 41 1 1.3426 4.7588 -0.9025 42 1 4.1531 -2.0850 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164313098.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:17 Heat of formation + Delta-G solvation = 51.271539 kcal Electronic energy + Delta-G solvation = -27210.712207 eV Core-core repulsion = 23351.560782 eV Total energy + Delta-G solvation = -3859.151425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.08470 -40.51015 -39.22939 -36.55154 -36.41670 -34.31469 -33.22864 -31.98689 -30.82461 -30.16352 -28.97167 -28.13680 -26.06117 -24.88947 -23.30286 -22.56836 -22.18387 -21.81163 -20.30347 -18.95321 -18.67066 -17.80691 -17.17971 -17.11378 -16.44942 -16.29670 -15.27512 -14.97644 -14.94388 -14.62509 -14.51060 -13.98950 -13.62070 -13.50981 -13.24902 -13.05651 -13.00442 -12.76329 -12.48899 -12.31154 -11.74292 -11.45995 -11.35756 -11.28988 -11.08073 -10.98577 -10.94550 -10.93729 -10.67354 -10.43636 -9.98129 -9.82883 -9.79410 -9.43630 -8.79672 -8.63937 -8.50369 -7.94375 -6.26036 -4.31259 0.20623 0.97801 1.38398 1.46761 1.53179 1.60941 3.11531 3.16453 3.25609 3.28846 3.50929 3.93713 4.24106 4.25658 4.26104 4.62238 4.69641 4.97316 5.00128 5.09006 5.10484 5.11685 5.24352 5.35214 5.39086 5.41685 5.56306 5.62824 5.66081 5.77692 5.85461 5.97397 6.05583 6.15120 6.21649 6.52616 6.56801 6.60865 6.67880 6.84597 7.11895 7.24126 7.32309 7.55235 7.68663 7.80657 7.95141 8.02380 8.73930 9.35678 10.84177 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.008673 B = 0.004458 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3227.571788 B = 6279.383050 C = 8518.062782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.055 3.945 3 C -0.237 4.237 4 C 0.452 3.548 5 N -0.662 5.662 6 C 0.184 3.816 7 H 0.087 0.913 8 C 0.024 3.976 9 C -0.528 4.528 10 H 0.058 0.942 11 C 0.064 3.936 12 N -0.888 5.888 13 Si 0.893 3.107 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.282 1.282 17 C -0.088 4.088 18 C -0.102 4.102 19 C -0.122 4.122 20 C -0.129 4.129 21 C -0.121 4.121 22 C -0.113 4.113 23 N -0.537 5.537 24 C 0.234 3.766 25 C -0.180 4.180 26 N 0.048 4.952 27 O -0.170 6.170 28 O -0.178 6.178 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.152 0.848 33 H 0.415 0.585 34 H 0.028 0.972 35 H 0.040 0.960 36 H 0.263 0.737 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.454 -6.583 -9.275 14.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.048 3.952 3 C -0.263 4.263 4 C 0.213 3.787 5 N -0.285 5.285 6 C 0.080 3.920 7 H 0.105 0.895 8 C -0.013 4.013 9 C -0.566 4.566 10 H 0.076 0.924 11 C -0.139 4.139 12 N -0.527 5.527 13 Si 0.720 3.280 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.089 4.089 18 C -0.120 4.120 19 C -0.140 4.140 20 C -0.147 4.147 21 C -0.139 4.139 22 C -0.132 4.132 23 N -0.257 5.257 24 C 0.069 3.931 25 C -0.271 4.271 26 N 0.565 4.435 27 O -0.385 6.385 28 O -0.390 6.390 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.170 0.830 33 H 0.253 0.747 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.158 -5.486 -9.231 12.906 hybrid contribution -0.282 -0.337 0.995 1.088 sum -7.440 -5.823 -8.236 12.534 Atomic orbital electron populations 1.21001 0.88663 1.03731 1.04574 1.19744 0.97439 0.89759 0.88307 1.21339 0.92847 0.98626 1.13508 1.18794 0.88610 0.86798 0.84546 1.45149 1.09864 1.01591 1.71878 1.20563 0.97827 0.82982 0.90658 0.89487 1.19416 0.94039 0.92058 0.95771 1.21101 1.31124 1.09764 0.94619 0.92354 1.24969 0.95455 0.94842 0.98620 1.69952 1.32618 1.13576 1.36505 0.86523 0.78165 0.78439 0.84855 1.19739 1.20849 1.20833 1.20526 0.94019 0.98216 0.96124 1.20947 0.99158 0.99476 0.92405 1.21104 0.96849 0.99418 0.96594 1.21075 0.94459 1.00201 0.98932 1.21060 0.99451 1.00421 0.92943 1.21002 0.96241 0.99228 0.96712 1.67611 1.38356 0.96517 1.23188 1.22228 0.88048 0.96740 0.86094 1.21540 0.93842 0.83277 1.28433 1.43309 1.00123 1.02328 0.97761 1.94495 1.12792 1.89753 1.41452 1.94514 1.70550 1.32130 1.41854 0.88487 0.90132 0.90685 0.83047 0.74698 0.95380 0.94142 0.92692 0.86363 0.86463 0.86562 0.86326 0.85994 0.81059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 8.74 36.00 0.31 -0.99 16 2 C 0.06 0.73 5.90 -104.36 -0.62 0.12 16 3 C -0.24 -3.28 8.84 -39.22 -0.35 -3.62 16 4 C 0.45 6.94 7.62 -155.01 -1.18 5.75 16 5 N -0.66 -10.57 4.21 -55.06 -0.23 -10.80 16 6 C 0.18 3.05 1.81 -69.08 -0.13 2.93 16 7 H 0.09 1.41 6.31 -51.93 -0.33 1.08 16 8 C 0.02 0.52 4.49 -27.88 -0.13 0.40 16 9 C -0.53 -12.95 8.84 -34.44 -0.30 -13.25 16 10 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.89 -24.31 13.29 55.43 0.74 -23.58 16 13 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 C -0.09 -1.31 4.77 -104.63 -0.50 -1.81 16 18 C -0.10 -1.47 9.32 -39.58 -0.37 -1.84 16 19 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 20 C -0.13 -1.53 10.05 -39.58 -0.40 -1.92 16 21 C -0.12 -1.45 10.05 -39.58 -0.40 -1.84 16 22 C -0.11 -1.51 9.67 -39.58 -0.38 -1.90 16 23 N -0.54 -8.20 10.39 -12.44 -0.13 -8.33 16 24 C 0.23 3.22 10.81 -17.57 -0.19 3.03 16 25 C -0.18 -2.55 6.51 -79.80 -0.52 -3.07 16 26 N 0.05 0.72 4.18 34.04 0.14 0.86 16 27 O -0.17 -2.57 16.91 -29.46 -0.50 -3.07 16 28 O -0.18 -2.72 18.95 -29.46 -0.56 -3.28 16 29 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 31 H 0.07 0.82 7.02 -51.93 -0.36 0.46 16 32 H 0.15 1.91 6.17 -52.48 -0.32 1.59 16 33 H 0.42 6.81 8.73 -40.82 -0.36 6.45 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.12 1.70 7.73 -52.48 -0.41 1.29 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.12 1.44 8.04 -52.49 -0.42 1.02 16 42 H 0.17 1.95 8.00 -52.48 -0.42 1.53 16 LS Contribution 366.43 15.07 5.52 5.52 Total: -1.00 -28.08 366.43 -10.79 -38.87 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.12 Total: 6.96 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -5.64 Total: -18.42 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.52 Total: -41.84 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -1.06 Total: -6.36 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.08 -10.79 -38.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164313098.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.140 kcal (2) G-P(sol) polarization free energy of solvation -28.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds