Wall clock time and date at job start Tue Mar 31 2020 14:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38343 * 120.75010 * 2 1 4 4 C 1.39099 * 119.10027 * 180.28860 * 3 2 1 5 5 N 1.39002 * 119.71035 * 179.70405 * 4 3 2 6 6 C 1.46510 * 119.99414 * 359.97438 * 5 4 3 7 7 H 1.08995 * 109.47216 * 35.00222 * 6 5 4 8 8 C 1.53002 * 109.46461 * 155.00074 * 6 5 4 9 9 C 1.50700 * 109.47197 * 294.99925 * 8 6 5 10 10 H 1.08001 * 120.00240 * 0.02562 * 9 8 6 11 11 C 1.37882 * 120.00095 * 180.02562 * 9 8 6 12 12 N 1.31512 * 119.99550 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00138 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47067 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47256 * 119.99702 * 13 11 9 16 16 H 1.48507 * 109.47031 * 239.99902 * 13 11 9 17 17 C 1.50694 * 109.47264 * 275.00020 * 6 5 4 18 18 C 1.38235 * 119.99891 * 319.72608 * 17 6 5 19 19 C 1.38237 * 120.00031 * 179.81016 * 18 17 6 20 20 C 1.38239 * 119.99824 * 0.39860 * 19 18 17 21 21 C 1.38238 * 120.00133 * 359.85917 * 20 19 18 22 22 C 1.38233 * 119.99715 * 359.95221 * 21 20 19 23 23 N 1.32431 * 120.58606 * 359.68630 * 4 3 2 24 24 C 1.31936 * 121.62338 * 0.02562 * 23 4 3 25 25 C 1.38066 * 120.85773 * 359.97438 * 24 23 4 26 26 N 1.48003 * 120.33831 * 180.02562 * 25 24 23 27 27 O 1.21804 * 120.00308 * 143.32472 * 26 25 24 28 28 O 1.21800 * 119.99790 * 323.04173 * 26 25 24 29 29 H 1.08999 * 109.47202 * 264.66902 * 1 2 3 30 30 H 1.09006 * 109.46618 * 24.65840 * 1 2 3 31 31 H 1.08991 * 109.47329 * 144.65776 * 1 2 3 32 32 H 1.08004 * 120.45054 * 359.97438 * 3 2 1 33 33 H 0.96997 * 120.00493 * 179.97438 * 5 4 3 34 34 H 1.08999 * 109.47502 * 55.00452 * 8 6 5 35 35 H 1.09006 * 109.46802 * 175.00321 * 8 6 5 36 36 H 0.97005 * 119.99708 * 179.97438 * 12 11 9 37 37 H 1.08003 * 120.00487 * 0.02562 * 18 17 6 38 38 H 1.07997 * 120.00332 * 180.23100 * 19 18 17 39 39 H 1.08001 * 119.99909 * 179.83106 * 20 19 18 40 40 H 1.07994 * 120.00024 * 179.97438 * 21 20 19 41 41 H 1.07993 * 120.00308 * 179.97438 * 22 21 20 42 42 H 1.08005 * 119.57114 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2143 1.1889 0.0000 4 6 3.6047 1.1489 -0.0061 5 7 4.3281 2.3358 -0.0124 6 6 3.6257 3.6216 -0.0132 7 1 2.7152 3.5386 0.5802 8 6 4.5312 4.6975 0.5897 9 6 4.7865 4.3835 2.0414 10 1 4.3474 3.5043 2.4891 11 6 5.5809 5.2188 2.7980 12 7 6.1161 6.2891 2.2526 13 14 5.8981 4.8292 4.5971 14 1 5.1874 3.5784 4.9655 15 1 7.3562 4.6534 4.8160 16 1 5.4021 5.9465 5.4404 17 6 3.2704 3.9991 -1.4281 18 6 4.1721 3.7723 -2.4511 19 6 3.8446 4.1150 -3.7497 20 6 2.6187 4.6920 -4.0241 21 6 1.7192 4.9237 -3.0003 22 6 2.0451 4.5774 -1.7024 23 7 4.2455 -0.0101 -0.0056 24 6 3.5970 -1.1591 0.0001 25 6 2.2168 -1.1932 0.0064 26 7 1.5011 -2.4887 0.0133 27 8 0.4689 -2.6108 0.6483 28 8 1.9415 -3.4312 -0.6201 29 1 -0.3633 -0.0955 1.0232 30 1 -0.3633 0.9340 -0.4288 31 1 -0.3633 -0.8382 -0.5944 32 1 1.6940 2.1354 -0.0004 33 1 5.2978 2.3129 -0.0163 34 1 5.4782 4.7194 0.0506 35 1 4.0443 5.6694 0.5084 36 1 6.6747 6.8770 2.7850 37 1 5.1310 3.3242 -2.2364 38 1 4.5475 3.9344 -4.5495 39 1 2.3640 4.9623 -5.0382 40 1 0.7617 5.3749 -3.2146 41 1 1.3426 4.7588 -0.9025 42 1 4.1531 -2.0850 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164313098.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:16 Heat of formation + Delta-G solvation = 39.304089 kcal Electronic energy + Delta-G solvation = -27211.231154 eV Core-core repulsion = 23351.560782 eV Total energy + Delta-G solvation = -3859.670372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.24103 -41.65521 -40.29226 -37.76111 -37.59551 -35.48015 -34.92343 -33.29236 -31.82247 -31.26146 -30.48646 -29.13775 -27.38963 -26.30469 -24.53310 -23.68887 -23.43366 -22.93379 -21.51256 -20.09836 -19.84805 -18.99328 -18.65146 -18.32715 -17.84698 -17.43243 -16.62406 -16.40306 -16.05241 -15.85310 -15.61398 -15.13457 -14.76832 -14.63382 -14.35462 -14.20862 -14.05298 -13.97621 -13.70012 -13.45109 -13.34068 -13.01817 -12.68346 -12.62877 -12.54477 -12.30251 -12.23007 -12.09334 -11.99114 -11.76774 -11.57301 -11.21047 -10.94155 -10.88207 -10.63627 -9.78677 -9.59705 -9.13963 -8.24966 -6.34362 -0.95291 -0.09306 0.22788 0.42465 0.47729 0.53616 1.34905 1.39132 1.48108 1.90958 2.35635 2.38537 2.92222 3.10795 3.19038 3.25548 3.51957 3.60424 3.85404 3.96774 4.14496 4.18655 4.25828 4.31171 4.34152 4.43207 4.56229 4.56791 4.66276 4.73654 4.76932 4.95471 5.00965 5.09561 5.17493 5.28930 5.37765 5.42682 5.58430 5.59635 5.63897 5.73669 5.87418 6.09928 6.15329 6.31084 6.61431 6.74348 6.79454 7.35372 8.85676 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.008673 B = 0.004458 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3227.571788 B = 6279.383050 C = 8518.062782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.059 3.941 3 C -0.239 4.239 4 C 0.442 3.558 5 N -0.669 5.669 6 C 0.203 3.797 7 H 0.092 0.908 8 C 0.034 3.966 9 C -0.527 4.527 10 H 0.057 0.943 11 C 0.013 3.987 12 N -0.925 5.925 13 Si 0.950 3.050 14 H -0.269 1.269 15 H -0.283 1.283 16 H -0.279 1.279 17 C -0.105 4.105 18 C -0.121 4.121 19 C -0.130 4.130 20 C -0.126 4.126 21 C -0.120 4.120 22 C -0.122 4.122 23 N -0.553 5.553 24 C 0.233 3.767 25 C -0.187 4.187 26 N 0.050 4.950 27 O -0.169 6.169 28 O -0.190 6.190 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.164 0.836 33 H 0.409 0.591 34 H 0.004 0.996 35 H 0.017 0.983 36 H 0.263 0.737 37 H 0.108 0.892 38 H 0.135 0.865 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.135 0.865 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.320 -7.007 -9.905 15.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.051 3.949 3 C -0.265 4.265 4 C 0.203 3.797 5 N -0.291 5.291 6 C 0.098 3.902 7 H 0.110 0.890 8 C -0.003 4.003 9 C -0.565 4.565 10 H 0.075 0.925 11 C -0.186 4.186 12 N -0.565 5.565 13 Si 0.777 3.223 14 H -0.194 1.194 15 H -0.209 1.209 16 H -0.205 1.205 17 C -0.106 4.106 18 C -0.139 4.139 19 C -0.148 4.148 20 C -0.144 4.144 21 C -0.138 4.138 22 C -0.140 4.140 23 N -0.273 5.273 24 C 0.068 3.932 25 C -0.278 4.278 26 N 0.566 4.434 27 O -0.385 6.385 28 O -0.400 6.400 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.182 0.818 33 H 0.246 0.754 34 H 0.023 0.977 35 H 0.035 0.965 36 H 0.072 0.928 37 H 0.126 0.874 38 H 0.153 0.847 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.153 0.847 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -9.034 -5.949 -9.873 14.645 hybrid contribution 0.260 -0.239 1.127 1.181 sum -8.774 -6.188 -8.747 13.848 Atomic orbital electron populations 1.21098 0.86613 1.04878 1.05258 1.20056 0.98878 0.89038 0.86927 1.21451 0.92158 0.99404 1.13448 1.18937 0.89268 0.86497 0.84961 1.45001 1.09513 1.01778 1.72855 1.20124 0.96390 0.81791 0.91873 0.89047 1.19163 0.93814 0.92858 0.94479 1.21434 1.29991 1.09057 0.96037 0.92471 1.25704 0.95712 0.94919 1.02243 1.70058 1.33828 1.14719 1.37855 0.85618 0.77786 0.78221 0.80719 1.19383 1.20911 1.20518 1.20389 0.95274 0.99971 0.94984 1.21017 0.98961 1.00454 0.93464 1.21375 0.97914 0.99240 0.96225 1.21478 0.93694 0.98805 1.00456 1.21434 1.00634 0.99517 0.92174 1.21243 0.95832 0.98866 0.98071 1.67601 1.38960 0.96907 1.23836 1.22550 0.88284 0.96977 0.85361 1.21696 0.94108 0.83275 1.28705 1.43379 1.00057 1.02451 0.97559 1.94486 1.12905 1.89817 1.41324 1.94516 1.70733 1.32486 1.42258 0.87560 0.87863 0.90954 0.81833 0.75434 0.97721 0.96456 0.92778 0.87436 0.84734 0.83637 0.83378 0.84685 0.79091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 8.74 71.24 0.62 -1.66 16 2 C 0.06 1.45 5.90 -19.70 -0.12 1.34 16 3 C -0.24 -6.28 8.84 22.50 0.20 -6.08 16 4 C 0.44 13.41 7.62 133.05 1.01 14.42 16 5 N -0.67 -21.73 4.21 -328.10 -1.38 -23.11 16 6 C 0.20 6.81 1.81 44.24 0.08 6.89 16 7 H 0.09 2.94 6.31 -2.39 -0.02 2.92 16 8 C 0.03 1.53 4.49 29.85 0.13 1.66 16 9 C -0.53 -26.29 8.84 25.60 0.23 -26.06 16 10 H 0.06 2.82 7.74 -2.91 -0.02 2.79 16 11 C 0.01 0.70 5.46 84.66 0.46 1.16 16 12 N -0.92 -51.83 13.29 21.45 0.28 -51.54 16 13 Si 0.95 41.97 29.54 68.60 2.03 43.99 16 14 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 16 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 17 C -0.10 -3.11 4.77 -19.87 -0.09 -3.20 16 18 C -0.12 -3.51 9.32 22.27 0.21 -3.31 16 19 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 20 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 21 C -0.12 -2.52 10.05 22.27 0.22 -2.30 16 22 C -0.12 -3.05 9.67 22.27 0.22 -2.84 16 23 N -0.55 -16.71 10.39 -193.26 -2.01 -18.72 16 24 C 0.23 6.20 10.81 84.64 0.91 7.11 16 25 C -0.19 -5.04 6.51 36.48 0.24 -4.81 16 26 N 0.05 1.42 4.18 -46.23 -0.19 1.23 16 27 O -0.17 -4.84 16.91 18.88 0.32 -4.52 16 28 O -0.19 -5.59 18.95 18.89 0.36 -5.23 16 29 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.10 1.46 8.07 -2.38 -0.02 1.44 16 31 H 0.07 1.42 7.02 -2.39 -0.02 1.40 16 32 H 0.16 3.83 6.17 -2.91 -0.02 3.81 16 33 H 0.41 14.03 8.73 -92.71 -0.81 13.22 16 34 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.26 14.06 8.31 -92.70 -0.77 13.29 16 37 H 0.11 3.25 7.73 -2.91 -0.02 3.22 16 38 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 39 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 41 H 0.14 2.92 8.04 -2.91 -0.02 2.90 16 42 H 0.19 4.13 8.00 -2.91 -0.02 4.11 16 Total: -1.00 -60.50 366.43 4.43 -56.07 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.25 Total: 24.85 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 4.77 Total: -23.02 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -3.30 Total: -92.14 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.68 Total: -9.75 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Total: -60.50 4.43 -56.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164313098.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.372 kcal (2) G-P(sol) polarization free energy of solvation -60.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds