Wall clock time and date at job start Tue Mar 31 2020 15:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34864 * 119.09961 * 2 1 4 4 C 1.41671 * 119.33544 * 180.32510 * 3 2 1 5 5 O 1.22090 * 121.06504 * 179.71997 * 4 3 2 6 6 C 1.47100 * 117.86509 * 359.44426 * 4 3 2 7 7 C 1.47285 * 120.87906 * 180.27542 * 6 4 3 8 8 O 1.21616 * 120.00558 * 329.15161 * 7 6 4 9 9 N 1.34779 * 119.99807 * 149.15825 * 7 6 4 10 10 C 1.46506 * 119.99915 * 6.51960 * 9 7 6 11 11 C 1.50700 * 109.47427 * 98.65490 * 10 9 7 12 12 H 1.08007 * 119.99556 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00028 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99976 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00038 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47178 * 89.99740 * 15 13 11 17 17 H 1.48496 * 109.47194 * 209.99785 * 15 13 11 18 18 H 1.48503 * 109.47045 * 330.00312 * 15 13 11 19 19 C 1.46493 * 120.00214 * 186.51597 * 9 7 6 20 20 C 1.50706 * 109.46984 * 89.99778 * 19 9 7 21 21 C 1.38669 * 120.42025 * 269.72413 * 20 19 9 22 22 C 1.38623 * 118.42144 * 179.78506 * 21 20 19 23 23 C 1.38236 * 119.16078 * 0.51107 * 22 21 20 24 24 N 1.31853 * 120.75903 * 359.72727 * 23 22 21 25 25 C 1.31884 * 121.73073 * 0.02562 * 24 23 22 26 26 C 1.37991 * 118.23170 * 0.25083 * 6 4 3 27 27 N 1.34337 * 120.37503 * 0.02601 * 26 6 4 28 28 H 0.96998 * 118.80425 * 179.97438 * 27 26 6 29 29 H 1.09006 * 109.46556 * 270.27039 * 1 2 3 30 30 H 1.09000 * 109.47354 * 30.26699 * 1 2 3 31 31 H 1.09000 * 109.47335 * 150.27045 * 1 2 3 32 32 H 1.07999 * 120.33191 * 0.03969 * 3 2 1 33 33 H 1.09004 * 109.46752 * 218.65921 * 10 9 7 34 34 H 1.08999 * 109.47200 * 338.65645 * 10 9 7 35 35 H 0.97004 * 119.99587 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.47427 * 210.00205 * 19 9 7 37 37 H 1.08997 * 109.47427 * 330.00217 * 19 9 7 38 38 H 1.08001 * 120.78914 * 0.02562 * 21 20 19 39 39 H 1.07996 * 120.42321 * 180.21740 * 22 21 20 40 40 H 1.07994 * 119.61708 * 179.75273 * 23 22 21 41 41 H 1.08000 * 119.62285 * 180.02562 * 25 24 23 42 42 H 1.08000 * 119.80695 * 179.97438 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 -0.0070 5 8 4.2053 2.2326 -0.0123 6 6 4.2725 -0.1133 -0.0014 7 6 5.7436 -0.1847 -0.0021 8 8 6.3945 0.6865 -0.5466 9 7 6.3686 -1.2155 0.6007 10 6 5.5881 -2.3362 1.1312 11 6 5.6065 -3.4736 0.1427 12 1 6.1460 -3.3720 -0.7874 13 6 4.9355 -4.6442 0.4263 14 7 4.2799 -4.7684 1.5596 15 14 4.9589 -6.0543 -0.7986 16 1 6.1162 -6.9397 -0.5122 17 1 3.6995 -6.8324 -0.6818 18 1 5.0798 -5.5118 -2.1758 19 6 7.8282 -1.2154 0.7255 20 6 8.2217 -0.5489 2.0186 21 6 8.4584 0.8168 2.0611 22 6 8.8136 1.3875 3.2734 23 6 8.9298 0.5802 4.3896 24 7 8.7019 -0.7161 4.3109 25 6 8.3574 -1.2922 3.1757 26 6 3.5076 -1.2618 0.0050 27 7 2.1664 -1.1847 0.0055 28 1 1.6511 -2.0064 0.0097 29 1 -0.3633 0.0049 1.0277 30 1 -0.3634 0.8876 -0.5180 31 1 -0.3634 -0.8924 -0.5096 32 1 1.6137 2.1083 0.0006 33 1 6.0227 -2.6673 2.0744 34 1 4.5596 -2.0161 1.2976 35 1 3.8076 -5.5919 1.7588 36 1 8.1934 -2.2424 0.7201 37 1 8.2644 -0.6703 -0.1115 38 1 8.3643 1.4220 1.1716 39 1 9.0019 2.4485 3.3440 40 1 9.2100 1.0165 5.3369 41 1 8.1785 -2.3569 3.1501 42 1 3.9899 -2.2281 0.0088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172712303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:28 Heat of formation + Delta-G solvation = 13.997660 kcal Electronic energy + Delta-G solvation = -27978.736921 eV Core-core repulsion = 24117.969180 eV Total energy + Delta-G solvation = -3860.767741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.68993 -39.86214 -38.49268 -37.17923 -35.20450 -33.63353 -32.82126 -32.09830 -31.37802 -30.58598 -28.25018 -27.63567 -25.82094 -23.73865 -23.27964 -22.65957 -22.15787 -21.52596 -19.73167 -17.47578 -17.25283 -16.98913 -16.56775 -16.22939 -15.78993 -15.34971 -15.24359 -14.92616 -14.86008 -14.60247 -14.01551 -13.80839 -13.42290 -13.22734 -13.07524 -12.85419 -12.74202 -12.65156 -12.60010 -12.40351 -12.37582 -12.07597 -11.68923 -11.26502 -11.22160 -11.10281 -10.56804 -10.40690 -10.02287 -9.48994 -9.29236 -9.16393 -9.09518 -8.82892 -8.78557 -8.48586 -7.82925 -7.57874 -6.51678 -4.64431 1.35977 1.40192 1.63454 1.81144 3.01692 3.10830 3.12398 3.15015 3.57382 3.82919 4.05442 4.27666 4.40323 4.46310 4.75280 4.76245 4.93993 5.12929 5.18922 5.25016 5.26632 5.31944 5.37939 5.43784 5.60188 5.65045 5.68674 5.87303 5.99342 6.13001 6.15558 6.24932 6.34380 6.47618 6.51832 6.67282 6.75450 6.97126 7.03772 7.14861 7.26966 7.39974 7.47750 7.71047 8.26390 8.28254 8.54456 8.63293 9.02909 9.15522 10.50654 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.008076 B = 0.006006 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3466.417362 B = 4660.628850 C = 7121.512506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.153 3.847 3 C -0.285 4.285 4 C 0.412 3.588 5 O -0.507 6.507 6 C -0.322 4.322 7 C 0.583 3.417 8 O -0.548 6.548 9 N -0.596 5.596 10 C 0.212 3.788 11 C -0.551 4.551 12 H 0.071 0.929 13 C 0.068 3.932 14 N -0.880 5.880 15 Si 0.897 3.103 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.164 3.836 20 C -0.145 4.145 21 C -0.055 4.055 22 C -0.180 4.180 23 C 0.088 3.912 24 N -0.491 5.491 25 C 0.113 3.887 26 C 0.165 3.835 27 N -0.578 5.578 28 H 0.420 0.580 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.144 0.856 33 H 0.037 0.963 34 H 0.053 0.947 35 H 0.271 0.729 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.149 0.851 41 H 0.157 0.843 42 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.887 3.110 0.489 5.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.045 3.955 3 C -0.309 4.309 4 C 0.301 3.699 5 O -0.391 6.391 6 C -0.332 4.332 7 C 0.373 3.627 8 O -0.427 6.427 9 N -0.327 5.327 10 C 0.093 3.907 11 C -0.589 4.589 12 H 0.089 0.911 13 C -0.138 4.138 14 N -0.516 5.516 15 Si 0.723 3.277 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.194 1.194 19 C 0.040 3.960 20 C -0.148 4.148 21 C -0.081 4.081 22 C -0.200 4.200 23 C -0.069 4.069 24 N -0.199 5.199 25 C -0.044 4.044 26 C 0.035 3.965 27 N -0.183 5.183 28 H 0.256 0.744 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.162 0.838 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.166 0.834 41 H 0.174 0.826 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -4.251 3.507 1.065 5.613 hybrid contribution -0.513 -0.810 -1.133 1.484 sum -4.764 2.697 -0.068 5.475 Atomic orbital electron populations 1.21071 0.88565 1.04443 1.04061 1.20343 0.94578 0.86237 0.94326 1.22113 0.96442 0.96875 1.15507 1.18156 0.88174 0.87980 0.75632 1.90729 1.70226 1.33611 1.44573 1.22232 0.94646 0.94606 1.21673 1.17466 0.86217 0.81052 0.78014 1.90686 1.66767 1.39712 1.45489 1.48005 1.05739 1.21293 1.57689 1.20088 0.92465 0.82934 0.95261 1.21630 1.33535 0.98578 1.05136 0.91098 1.25062 0.94751 0.98375 0.95571 1.69951 1.31633 1.27686 1.22347 0.86491 0.78036 0.81786 0.81379 1.20025 1.20872 1.19417 1.20082 0.81864 1.00958 0.93065 1.21462 1.00123 0.94941 0.98302 1.21695 0.93384 0.94599 0.98448 1.22107 1.02678 1.01148 0.94029 1.22669 0.96459 0.89608 0.98169 1.67682 1.11952 1.12298 1.28013 1.22775 0.93882 1.00541 0.87203 1.24914 0.81596 1.04385 0.85561 1.41043 1.06780 1.08400 1.62096 0.74352 0.89488 0.89189 0.90604 0.83821 0.94448 0.92979 0.91947 0.88949 0.89624 0.84439 0.85259 0.83351 0.82562 0.75039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.02 36.01 0.36 -0.55 16 2 C 0.15 1.91 6.79 -82.13 -0.56 1.35 16 3 C -0.28 -4.53 9.57 -39.47 -0.38 -4.91 16 4 C 0.41 8.80 6.94 -34.68 -0.24 8.56 16 5 O -0.51 -12.81 16.83 -10.77 -0.18 -12.99 16 6 C -0.32 -6.80 5.73 -102.72 -0.59 -7.39 16 7 C 0.58 13.39 7.39 -12.58 -0.09 13.30 16 8 O -0.55 -13.92 15.65 -10.35 -0.16 -14.08 16 9 N -0.60 -12.49 2.45 -177.75 -0.44 -12.93 16 10 C 0.21 4.56 4.65 -5.19 -0.02 4.54 16 11 C -0.55 -12.24 7.51 -34.44 -0.26 -12.50 16 12 H 0.07 1.63 7.81 -52.48 -0.41 1.22 16 13 C 0.07 1.51 5.37 -17.82 -0.10 1.41 16 14 N -0.88 -20.33 13.29 55.43 0.74 -19.59 16 15 Si 0.90 17.67 29.54 -169.99 -5.02 12.65 16 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 17 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 19 C 0.16 3.05 5.61 -5.19 -0.03 3.02 16 20 C -0.15 -2.58 5.48 -104.48 -0.57 -3.16 16 21 C -0.05 -0.95 9.86 -39.28 -0.39 -1.33 16 22 C -0.18 -2.69 10.11 -39.44 -0.40 -3.09 16 23 C 0.09 1.32 11.18 -17.54 -0.20 1.13 16 24 N -0.49 -8.51 10.36 -13.25 -0.14 -8.65 16 25 C 0.11 1.98 10.86 -17.55 -0.19 1.79 16 26 C 0.16 2.93 8.69 -16.55 -0.14 2.79 16 27 N -0.58 -7.72 5.16 -9.00 -0.05 -7.77 16 28 H 0.42 4.25 8.70 -40.82 -0.35 3.90 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.57 8.06 -51.93 -0.42 0.15 16 31 H 0.08 0.43 8.12 -51.93 -0.42 0.00 16 32 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.04 0.86 8.13 -51.93 -0.42 0.43 16 34 H 0.05 1.14 4.08 -51.93 -0.21 0.92 16 35 H 0.27 5.99 8.31 -40.82 -0.34 5.65 16 36 H 0.09 1.60 8.02 -51.93 -0.42 1.18 16 37 H 0.09 1.60 7.29 -51.93 -0.38 1.22 16 38 H 0.14 2.47 8.04 -52.49 -0.42 2.05 16 39 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.15 1.73 8.06 -52.49 -0.42 1.30 16 41 H 0.16 2.62 8.06 -52.49 -0.42 2.19 16 42 H 0.23 4.50 3.23 -52.49 -0.17 4.33 16 LS Contribution 360.54 15.07 5.43 5.43 Total: -1.00 -32.34 360.54 -8.48 -40.83 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -4.88 Total: 12.15 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -3.79 Total: 4.95 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.12 Total: -48.94 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.34 Total: -27.07 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.02 Total: 12.65 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.34 -8.48 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172712303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.825 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds