Wall clock time and date at job start Tue Mar 31 2020 15:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34864 * 119.09961 * 2 1 4 4 C 1.41671 * 119.33544 * 180.32510 * 3 2 1 5 5 O 1.22090 * 121.06504 * 179.71997 * 4 3 2 6 6 C 1.47100 * 117.86509 * 359.44426 * 4 3 2 7 7 C 1.47285 * 120.87906 * 180.27542 * 6 4 3 8 8 O 1.21616 * 120.00558 * 329.15161 * 7 6 4 9 9 N 1.34779 * 119.99807 * 149.15825 * 7 6 4 10 10 C 1.46506 * 119.99915 * 6.51960 * 9 7 6 11 11 C 1.50700 * 109.47427 * 98.65490 * 10 9 7 12 12 H 1.08007 * 119.99556 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00028 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99976 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00038 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47178 * 89.99740 * 15 13 11 17 17 H 1.48496 * 109.47194 * 209.99785 * 15 13 11 18 18 H 1.48503 * 109.47045 * 330.00312 * 15 13 11 19 19 C 1.46493 * 120.00214 * 186.51597 * 9 7 6 20 20 C 1.50706 * 109.46984 * 89.99778 * 19 9 7 21 21 C 1.38669 * 120.42025 * 269.72413 * 20 19 9 22 22 C 1.38623 * 118.42144 * 179.78506 * 21 20 19 23 23 C 1.38236 * 119.16078 * 0.51107 * 22 21 20 24 24 N 1.31853 * 120.75903 * 359.72727 * 23 22 21 25 25 C 1.31884 * 121.73073 * 0.02562 * 24 23 22 26 26 C 1.37991 * 118.23170 * 0.25083 * 6 4 3 27 27 N 1.34337 * 120.37503 * 0.02601 * 26 6 4 28 28 H 0.96998 * 118.80425 * 179.97438 * 27 26 6 29 29 H 1.09006 * 109.46556 * 270.27039 * 1 2 3 30 30 H 1.09000 * 109.47354 * 30.26699 * 1 2 3 31 31 H 1.09000 * 109.47335 * 150.27045 * 1 2 3 32 32 H 1.07999 * 120.33191 * 0.03969 * 3 2 1 33 33 H 1.09004 * 109.46752 * 218.65921 * 10 9 7 34 34 H 1.08999 * 109.47200 * 338.65645 * 10 9 7 35 35 H 0.97004 * 119.99587 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.47427 * 210.00205 * 19 9 7 37 37 H 1.08997 * 109.47427 * 330.00217 * 19 9 7 38 38 H 1.08001 * 120.78914 * 0.02562 * 21 20 19 39 39 H 1.07996 * 120.42321 * 180.21740 * 22 21 20 40 40 H 1.07994 * 119.61708 * 179.75273 * 23 22 21 41 41 H 1.08000 * 119.62285 * 180.02562 * 25 24 23 42 42 H 1.08000 * 119.80695 * 179.97438 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 -0.0070 5 8 4.2053 2.2326 -0.0123 6 6 4.2725 -0.1133 -0.0014 7 6 5.7436 -0.1847 -0.0021 8 8 6.3945 0.6865 -0.5466 9 7 6.3686 -1.2155 0.6007 10 6 5.5881 -2.3362 1.1312 11 6 5.6065 -3.4736 0.1427 12 1 6.1460 -3.3720 -0.7874 13 6 4.9355 -4.6442 0.4263 14 7 4.2799 -4.7684 1.5596 15 14 4.9589 -6.0543 -0.7986 16 1 6.1162 -6.9397 -0.5122 17 1 3.6995 -6.8324 -0.6818 18 1 5.0798 -5.5118 -2.1758 19 6 7.8282 -1.2154 0.7255 20 6 8.2217 -0.5489 2.0186 21 6 8.4584 0.8168 2.0611 22 6 8.8136 1.3875 3.2734 23 6 8.9298 0.5802 4.3896 24 7 8.7019 -0.7161 4.3109 25 6 8.3574 -1.2922 3.1757 26 6 3.5076 -1.2618 0.0050 27 7 2.1664 -1.1847 0.0055 28 1 1.6511 -2.0064 0.0097 29 1 -0.3633 0.0049 1.0277 30 1 -0.3634 0.8876 -0.5180 31 1 -0.3634 -0.8924 -0.5096 32 1 1.6137 2.1083 0.0006 33 1 6.0227 -2.6673 2.0744 34 1 4.5596 -2.0161 1.2976 35 1 3.8076 -5.5919 1.7588 36 1 8.1934 -2.2424 0.7201 37 1 8.2644 -0.6703 -0.1115 38 1 8.3643 1.4220 1.1716 39 1 9.0019 2.4485 3.3440 40 1 9.2100 1.0165 5.3369 41 1 8.1785 -2.3569 3.1501 42 1 3.9899 -2.2281 0.0088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172712303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:27 Heat of formation + Delta-G solvation = -5.761771 kcal Electronic energy + Delta-G solvation = -27979.593754 eV Core-core repulsion = 24117.969180 eV Total energy + Delta-G solvation = -3861.624575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.12110 -41.20909 -40.07184 -38.76449 -36.94532 -35.11660 -34.27241 -33.46532 -32.72828 -32.02995 -29.64202 -29.04799 -27.22963 -25.35470 -24.65678 -24.16748 -23.53276 -22.84476 -21.22699 -19.00909 -18.75048 -18.59803 -17.96528 -17.60634 -17.16253 -16.96259 -16.76939 -16.45722 -16.25604 -16.09419 -15.45936 -15.23273 -14.80674 -14.52158 -14.45146 -14.25788 -14.16029 -14.06770 -13.94813 -13.64873 -13.40607 -13.24691 -13.15799 -12.81519 -12.80555 -12.57755 -12.24997 -12.00144 -11.72901 -11.09835 -10.80668 -10.69053 -10.50566 -10.34262 -10.18762 -9.95641 -9.53702 -9.09436 -8.25513 -6.44205 -0.01730 0.09224 0.28408 0.41165 1.44714 1.52088 1.58490 1.84960 1.95806 2.26647 2.43048 2.82435 2.92086 3.00941 3.49930 3.52311 3.72045 3.81879 3.86917 3.92586 4.04879 4.07409 4.14405 4.27681 4.46867 4.60397 4.65062 4.72411 4.74975 4.78203 4.83434 4.86184 4.97529 5.15360 5.17502 5.17884 5.31043 5.38613 5.64671 5.73494 5.76822 5.81436 5.94657 6.14574 6.53038 6.77212 6.96641 7.10690 7.26251 7.41696 8.77071 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.008076 B = 0.006006 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3466.417362 B = 4660.628850 C = 7121.512506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.187 3.813 3 C -0.309 4.309 4 C 0.392 3.608 5 O -0.572 6.572 6 C -0.363 4.363 7 C 0.572 3.428 8 O -0.586 6.586 9 N -0.593 5.593 10 C 0.226 3.774 11 C -0.557 4.557 12 H 0.060 0.940 13 C 0.043 3.957 14 N -0.898 5.898 15 Si 0.951 3.049 16 H -0.282 1.282 17 H -0.273 1.273 18 H -0.272 1.272 19 C 0.164 3.836 20 C -0.156 4.156 21 C -0.071 4.071 22 C -0.172 4.172 23 C 0.092 3.908 24 N -0.506 5.506 25 C 0.105 3.895 26 C 0.190 3.810 27 N -0.557 5.557 28 H 0.441 0.559 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.164 0.836 33 H 0.021 0.979 34 H 0.053 0.947 35 H 0.275 0.725 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.122 0.878 39 H 0.162 0.838 40 H 0.190 0.810 41 H 0.157 0.843 42 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.485 1.989 1.193 7.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.078 3.922 3 C -0.333 4.333 4 C 0.286 3.714 5 O -0.462 6.462 6 C -0.373 4.373 7 C 0.363 3.637 8 O -0.468 6.468 9 N -0.323 5.323 10 C 0.106 3.894 11 C -0.595 4.595 12 H 0.078 0.922 13 C -0.161 4.161 14 N -0.535 5.535 15 Si 0.777 3.223 16 H -0.208 1.208 17 H -0.198 1.198 18 H -0.197 1.197 19 C 0.040 3.960 20 C -0.159 4.159 21 C -0.098 4.098 22 C -0.191 4.191 23 C -0.065 4.065 24 N -0.215 5.215 25 C -0.051 4.051 26 C 0.057 3.943 27 N -0.163 5.163 28 H 0.282 0.718 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.182 0.818 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.140 0.860 39 H 0.179 0.821 40 H 0.206 0.794 41 H 0.175 0.825 42 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -6.901 2.323 1.779 7.495 hybrid contribution 0.231 -0.533 -1.299 1.423 sum -6.670 1.790 0.480 6.922 Atomic orbital electron populations 1.21305 0.83483 1.06842 1.06101 1.21050 0.97220 0.84362 0.89563 1.22070 0.93733 0.99377 1.18099 1.18831 0.90503 0.87159 0.74922 1.90680 1.71784 1.35097 1.48641 1.22258 0.94102 0.96016 1.24905 1.17910 0.87313 0.80801 0.77668 1.90639 1.67786 1.41045 1.47312 1.48057 1.06615 1.20731 1.56927 1.19908 0.92292 0.82831 0.94380 1.21589 1.33931 0.99189 1.04780 0.92225 1.25520 0.94198 0.99696 0.96677 1.70004 1.31883 1.28362 1.23245 0.85653 0.77955 0.79278 0.79448 1.20818 1.19780 1.19659 1.20139 0.80760 1.01449 0.93623 1.21325 1.01358 0.95338 0.97922 1.21737 0.94435 0.94423 0.99215 1.22445 1.01017 1.02815 0.92831 1.23331 0.94741 0.88740 0.99667 1.67726 1.12466 1.13657 1.27660 1.22762 0.94395 1.00670 0.87285 1.24489 0.83386 1.02594 0.83863 1.41196 1.05417 1.10194 1.59490 0.71816 0.87246 0.87332 0.87720 0.81812 0.96136 0.93035 0.91528 0.88137 0.90459 0.85991 0.82061 0.79352 0.82548 0.76057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 10.02 71.24 0.71 -0.39 16 2 C 0.19 4.06 6.79 41.20 0.28 4.34 16 3 C -0.31 -9.55 9.57 22.34 0.21 -9.33 16 4 C 0.39 17.43 6.94 25.45 0.18 17.60 16 5 O -0.57 -30.85 16.83 9.31 0.16 -30.69 16 6 C -0.36 -15.94 5.73 -18.63 -0.11 -16.04 16 7 C 0.57 27.92 7.39 86.62 0.64 28.56 16 8 O -0.59 -32.07 15.65 10.84 0.17 -31.90 16 9 N -0.59 -26.21 2.45 -834.54 -2.04 -28.26 16 10 C 0.23 9.97 4.65 85.63 0.40 10.37 16 11 C -0.56 -24.98 7.51 25.60 0.19 -24.79 16 12 H 0.06 2.79 7.81 -2.91 -0.02 2.77 16 13 C 0.04 1.88 5.37 84.65 0.45 2.33 16 14 N -0.90 -40.49 13.29 21.45 0.28 -40.21 16 15 Si 0.95 35.32 29.54 68.60 2.03 37.35 16 16 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 17 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 18 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 19 C 0.16 6.48 5.61 85.64 0.48 6.96 16 20 C -0.16 -5.84 5.48 -19.77 -0.11 -5.94 16 21 C -0.07 -2.57 9.86 22.46 0.22 -2.35 16 22 C -0.17 -5.00 10.11 22.36 0.23 -4.78 16 23 C 0.09 2.62 11.18 84.69 0.95 3.56 16 24 N -0.51 -17.27 10.36 -195.84 -2.03 -19.30 16 25 C 0.11 3.78 10.86 84.67 0.92 4.70 16 26 C 0.19 6.68 8.69 84.25 0.73 7.42 16 27 N -0.56 -13.38 5.16 -182.38 -0.94 -14.33 16 28 H 0.44 7.12 8.70 -92.71 -0.81 6.32 16 29 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.11 0.76 8.06 -2.39 -0.02 0.74 16 31 H 0.10 0.48 8.12 -2.39 -0.02 0.46 16 32 H 0.16 4.29 8.06 -2.91 -0.02 4.27 16 33 H 0.02 0.97 8.13 -2.39 -0.02 0.95 16 34 H 0.05 2.29 4.08 -2.39 -0.01 2.28 16 35 H 0.28 11.72 8.31 -92.71 -0.77 10.95 16 36 H 0.10 3.70 8.02 -2.39 -0.02 3.68 16 37 H 0.08 3.14 7.29 -2.39 -0.02 3.12 16 38 H 0.12 4.74 8.04 -2.91 -0.02 4.71 16 39 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 40 H 0.19 3.74 8.06 -2.91 -0.02 3.72 16 41 H 0.16 5.45 8.06 -2.91 -0.02 5.42 16 42 H 0.22 8.55 3.23 -2.91 -0.01 8.54 16 Total: -1.00 -75.68 360.54 4.28 -71.41 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: 0.27 Total: 33.70 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 6.38 Total: 22.22 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -4.73 Total: -102.09 kcal Atomic # 8 Polarization: -62.91 SS G_CDS: 0.33 Total: -62.59 kcal Atomic # 14 Polarization: 35.32 SS G_CDS: 2.03 Total: 37.35 kcal Total: -75.68 4.28 -71.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172712303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.647 kcal (2) G-P(sol) polarization free energy of solvation -75.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds