Wall clock time and date at job start Tue Mar 31 2020 16:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50697 * 109.47506 * 2 1 4 4 C 1.38206 * 120.41272 * 124.99869 * 3 2 1 5 5 C 1.39517 * 118.33944 * 180.02562 * 4 3 2 6 6 N 1.38947 * 120.52606 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99911 * 185.09546 * 6 5 4 8 8 O 1.21586 * 119.99874 * 354.83118 * 7 6 5 9 9 C 1.47480 * 119.99939 * 175.10999 * 7 6 5 10 10 C 1.39685 * 120.19842 * 359.72380 * 9 7 6 11 11 C 1.37822 * 119.91820 * 179.97438 * 10 9 7 12 12 C 1.38578 * 120.32431 * 0.02562 * 11 10 9 13 13 C 1.38023 * 120.40814 * 359.97177 * 12 11 10 14 14 C 1.38830 * 120.07446 * 359.74772 * 13 12 11 15 15 O 1.35522 * 120.16678 * 180.26969 * 14 13 12 16 16 C 1.34805 * 116.99749 * 5.56665 * 15 14 13 17 17 H 1.08006 * 120.00336 * 354.93935 * 16 15 14 18 18 C 1.38700 * 119.99990 * 174.93754 * 16 15 14 19 19 N 1.31514 * 120.00034 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00046 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.46966 * 90.00226 * 20 18 16 22 22 H 1.48498 * 109.47017 * 210.00170 * 20 18 16 23 23 H 1.48498 * 109.46995 * 329.99910 * 20 18 16 24 24 N 1.32937 * 118.94644 * 0.24816 * 5 4 3 25 25 C 1.31744 * 120.70685 * 359.48905 * 24 5 4 26 26 C 1.50701 * 119.08789 * 180.28655 * 25 24 5 27 27 N 1.31798 * 121.82460 * 0.53178 * 25 24 5 28 28 H 1.09007 * 109.46877 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47270 * 300.00191 * 1 2 3 30 30 H 1.08993 * 109.47025 * 60.00272 * 1 2 3 31 31 H 1.08999 * 109.47651 * 240.00044 * 2 1 3 32 32 H 1.09002 * 109.47480 * 120.00095 * 2 1 3 33 33 H 1.08004 * 120.82950 * 0.04446 * 4 3 2 34 34 H 0.96996 * 119.99814 * 5.08788 * 6 5 4 35 35 H 1.08002 * 120.04663 * 359.97438 * 10 9 7 36 36 H 1.07996 * 119.83931 * 180.02562 * 11 10 9 37 37 H 1.08004 * 119.79516 * 179.97438 * 12 11 10 38 38 H 1.08004 * 119.96561 * 180.02562 * 13 12 11 39 39 H 0.96999 * 120.00524 * 179.97438 * 19 18 16 40 40 H 1.08996 * 109.46821 * 270.23581 * 26 25 24 41 41 H 1.08996 * 109.46778 * 30.23585 * 26 25 24 42 42 H 1.08997 * 109.47007 * 150.23640 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.9101 1.8524 0.9764 5 6 3.3472 3.1767 0.9353 6 7 4.2294 3.6588 1.8945 7 6 4.5647 4.9641 1.9062 8 8 4.1708 5.7009 1.0229 9 6 5.4146 5.4975 2.9871 10 6 5.8695 4.6547 4.0039 11 6 6.6639 5.1591 5.0109 12 6 7.0140 6.4999 5.0207 13 6 6.5721 7.3446 4.0227 14 6 5.7759 6.8531 2.9971 15 8 5.3454 7.6797 2.0132 16 6 5.8187 8.9419 2.0237 17 1 6.4437 9.2776 2.8381 18 6 5.5030 9.8096 0.9887 19 7 4.7416 9.4010 -0.0028 20 14 6.1582 11.5588 1.0036 21 1 7.4696 11.6021 0.3083 22 1 5.1987 12.4527 0.3068 23 1 6.3271 12.0122 2.4075 24 7 2.9021 3.9715 -0.0329 25 6 2.0693 3.5169 -0.9469 26 6 1.5928 4.4480 -2.0318 27 7 1.6376 2.2717 -0.9359 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.2494 1.1813 1.7515 34 1 4.6037 3.0559 2.5558 35 1 5.5992 3.6090 4.0011 36 1 7.0152 4.5063 5.7962 37 1 7.6366 6.8862 5.8142 38 1 6.8496 8.3883 4.0371 39 1 4.5205 10.0078 -0.7265 40 1 0.6840 4.9528 -1.7041 41 1 2.3649 5.1885 -2.2400 42 1 1.3847 3.8759 -2.9360 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174224068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:15 Heat of formation + Delta-G solvation = 23.617666 kcal Electronic energy + Delta-G solvation = -26960.396344 eV Core-core repulsion = 23100.045758 eV Total energy + Delta-G solvation = -3860.350587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.09223 -39.63512 -38.24508 -36.43726 -35.25341 -34.76985 -32.40506 -31.93585 -31.17772 -30.23510 -29.00497 -28.29426 -25.56790 -25.08802 -23.59105 -22.41782 -21.76656 -21.16972 -20.16794 -18.23716 -18.01285 -17.16847 -16.63384 -15.90388 -15.41741 -15.34874 -14.78036 -14.69498 -14.46599 -14.38789 -14.20991 -14.02505 -13.78917 -13.45188 -13.26706 -12.86035 -12.68419 -12.59698 -12.18114 -12.11040 -11.76713 -11.64412 -11.46591 -11.33174 -11.20739 -10.96934 -10.87856 -10.80620 -10.53454 -10.49686 -9.72185 -9.54003 -9.34087 -8.92886 -8.47677 -8.46818 -8.35963 -7.39332 -6.49177 -4.09464 1.10422 1.32220 1.70132 2.24000 3.06901 3.09080 3.10348 3.14965 3.57525 3.89117 4.05123 4.08619 4.28992 4.56822 4.71957 4.97151 4.98500 5.03397 5.09976 5.12551 5.32065 5.35257 5.42077 5.51733 5.56850 5.64366 5.68824 5.80860 5.87164 5.91079 6.01566 6.02288 6.07697 6.14988 6.43652 6.47411 6.58419 6.80037 6.89444 6.97413 7.09176 7.19263 7.25598 7.60559 7.75271 7.89281 8.50100 8.87384 8.91371 9.59349 10.63754 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013047 B = 0.003587 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.522161 B = 7803.809892 C = 9853.959805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.070 4.070 3 C 0.195 3.805 4 C -0.284 4.284 5 C 0.423 3.577 6 N -0.661 5.661 7 C 0.537 3.463 8 O -0.423 6.423 9 C -0.230 4.230 10 C -0.039 4.039 11 C -0.229 4.229 12 C -0.049 4.049 13 C -0.234 4.234 14 C 0.189 3.811 15 O -0.121 6.121 16 C -0.404 4.404 17 H 0.095 0.905 18 C 0.046 3.954 19 N -0.826 5.826 20 Si 0.941 3.059 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.266 1.266 24 N -0.509 5.509 25 C 0.352 3.648 26 C -0.083 4.083 27 N -0.550 5.550 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.141 0.859 34 H 0.412 0.588 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.133 0.867 39 H 0.273 0.727 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.801 -15.259 3.539 15.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C 0.051 3.949 4 C -0.311 4.311 5 C 0.182 3.818 6 N -0.309 5.309 7 C 0.326 3.674 8 O -0.289 6.289 9 C -0.235 4.235 10 C -0.058 4.058 11 C -0.248 4.248 12 C -0.067 4.067 13 C -0.254 4.254 14 C 0.129 3.871 15 O -0.019 6.019 16 C -0.480 4.480 17 H 0.112 0.888 18 C -0.163 4.163 19 N -0.457 5.457 20 Si 0.765 3.235 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.190 1.190 24 N -0.230 5.230 25 C 0.083 3.917 26 C -0.142 4.142 27 N -0.270 5.270 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.159 0.841 34 H 0.249 0.751 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.151 0.849 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.608 -13.852 1.801 14.427 hybrid contribution 1.040 -0.042 1.361 1.714 sum -2.568 -13.894 3.162 14.479 Atomic orbital electron populations 1.21655 0.93849 1.01652 1.02906 1.20477 0.97185 0.89853 1.03274 1.21325 0.89538 0.95905 0.88167 1.21985 1.07198 0.96450 1.05449 1.18739 0.87173 0.88517 0.87375 1.43845 1.44581 1.11701 1.30757 1.18554 0.81640 0.80459 0.86732 1.91068 1.48212 1.55180 1.34392 1.18670 1.11777 0.92543 1.00543 1.20740 0.95102 0.97114 0.92812 1.20452 1.06881 0.95886 1.01618 1.20920 0.96117 0.93354 0.96352 1.21163 1.05705 1.01246 0.97249 1.19214 0.90277 0.88985 0.88624 1.84155 1.56257 1.21008 1.40442 1.21509 1.32421 0.84925 1.09134 0.88763 1.25408 0.96295 1.00128 0.94477 1.70126 1.30899 1.36073 1.08566 0.85719 0.78737 0.80000 0.79017 1.19689 1.20055 1.19038 1.68445 1.14181 1.36837 1.03575 1.23215 0.87317 0.88834 0.92293 1.20554 1.02521 0.97140 0.93962 1.68029 1.28117 1.04204 1.26602 0.92286 0.92899 0.91356 0.89628 0.90179 0.84094 0.75076 0.87159 0.87116 0.87034 0.84920 0.91710 0.89711 0.89033 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.78 37.15 0.36 -0.88 16 2 C -0.07 -0.64 6.36 -27.89 -0.18 -0.81 16 3 C 0.20 2.61 6.20 -82.31 -0.51 2.10 16 4 C -0.28 -3.83 9.67 -39.12 -0.38 -4.21 16 5 C 0.42 7.46 7.45 -154.47 -1.15 6.31 16 6 N -0.66 -11.26 5.32 -12.25 -0.07 -11.32 16 7 C 0.54 11.95 7.72 -12.49 -0.10 11.85 16 8 O -0.42 -11.68 13.47 -16.57 -0.22 -11.90 16 9 C -0.23 -4.90 5.89 -104.82 -0.62 -5.52 16 10 C -0.04 -0.64 9.53 -39.19 -0.37 -1.01 16 11 C -0.23 -3.59 10.02 -39.61 -0.40 -3.99 16 12 C -0.05 -0.83 10.03 -39.53 -0.40 -1.23 16 13 C -0.23 -4.90 9.16 -39.44 -0.36 -5.26 16 14 C 0.19 4.61 6.66 -38.59 -0.26 4.35 16 15 O -0.12 -3.52 7.84 -21.04 -0.16 -3.68 16 16 C -0.40 -11.27 9.49 30.90 0.29 -10.97 16 17 H 0.10 2.37 5.21 -52.48 -0.27 2.10 16 18 C 0.05 1.25 5.49 -17.52 -0.10 1.16 16 19 N -0.83 -24.62 13.67 55.48 0.76 -23.86 16 20 Si 0.94 20.27 29.55 -169.99 -5.02 15.25 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 24 N -0.51 -10.47 7.94 -9.90 -0.08 -10.55 16 25 C 0.35 6.22 7.64 -157.23 -1.20 5.01 16 26 C -0.08 -1.24 10.32 36.01 0.37 -0.87 16 27 N -0.55 -8.57 9.93 -7.06 -0.07 -8.64 16 28 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.68 7.98 -51.93 -0.41 0.27 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.55 7.93 -51.93 -0.41 0.14 16 33 H 0.14 1.35 8.00 -52.48 -0.42 0.93 16 34 H 0.41 5.11 6.77 -40.82 -0.28 4.83 16 35 H 0.11 1.33 6.42 -52.49 -0.34 0.99 16 36 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 38 H 0.13 2.74 5.64 -52.48 -0.30 2.44 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 361.68 15.07 5.45 5.45 Total: -1.00 -36.07 361.68 -9.35 -45.42 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -4.95 Total: 7.81 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -4.99 Total: -3.97 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.54 Total: -54.37 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.39 Total: -15.58 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.07 -9.35 -45.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174224068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.033 kcal (2) G-P(sol) polarization free energy of solvation -36.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds