Wall clock time and date at job start Tue Mar 31 2020 15:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35778 * 126.22341 * 2 1 4 4 N 1.40693 * 126.08025 * 359.97438 * 3 2 1 5 5 C 1.34779 * 119.99399 * 179.97438 * 4 3 2 6 6 O 1.21745 * 120.00699 * 0.02562 * 5 4 3 7 7 C 1.46246 * 119.99650 * 179.97438 * 5 4 3 8 8 C 1.35019 * 120.00243 * 180.02562 * 7 5 4 9 9 C 1.46960 * 120.00391 * 180.02562 * 8 7 5 10 10 C 1.40026 * 120.10276 * 179.97438 * 9 8 7 11 11 C 1.37594 * 119.89669 * 179.97438 * 10 9 8 12 12 C 1.39173 * 120.10429 * 0.25829 * 11 10 9 13 13 O 1.35573 * 119.90272 * 179.72240 * 12 11 10 14 14 C 1.34778 * 116.99875 * 354.44397 * 13 12 11 15 15 H 1.08005 * 119.99749 * 5.06189 * 14 13 12 16 16 C 1.38712 * 120.00163 * 185.05517 * 14 13 12 17 17 N 1.31511 * 120.00210 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00313 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46923 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46924 * 119.99882 * 18 16 14 21 21 H 1.48496 * 109.47349 * 240.00178 * 18 16 14 22 22 C 1.39183 * 120.20116 * 359.49051 * 12 11 10 23 23 C 1.37597 * 120.09968 * 0.50458 * 22 12 11 24 24 C 1.40271 * 107.83212 * 180.26118 * 3 2 1 25 25 N 1.30822 * 108.33792 * 359.59084 * 24 3 2 26 26 N 1.35835 * 126.21971 * 180.02562 * 2 1 3 27 27 C 1.46498 * 126.05296 * 359.97438 * 26 2 1 28 28 H 1.09000 * 109.47078 * 89.99639 * 1 2 3 29 29 H 1.09001 * 109.47436 * 210.00633 * 1 2 3 30 30 H 1.09004 * 109.46803 * 329.99739 * 1 2 3 31 31 H 0.96995 * 120.00239 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.99836 * 0.02562 * 7 5 4 33 33 H 1.08003 * 119.99918 * 359.97438 * 8 7 5 34 34 H 1.07997 * 120.04753 * 359.96267 * 10 9 8 35 35 H 1.08001 * 119.95149 * 179.97438 * 11 10 9 36 36 H 0.96998 * 120.00620 * 179.97438 * 17 16 14 37 37 H 1.07999 * 119.94719 * 180.26076 * 22 12 11 38 38 H 1.08000 * 120.05081 * 179.76539 * 23 22 12 39 39 H 1.08007 * 125.82808 * 179.75988 * 24 3 2 40 40 H 1.08995 * 109.47267 * 89.99672 * 27 26 2 41 41 H 1.09000 * 109.47144 * 210.00131 * 27 26 2 42 42 H 1.08998 * 109.47046 * 329.99571 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3093 1.0954 0.0000 4 7 1.8817 2.4357 -0.0005 5 6 2.7889 3.4324 0.0001 6 8 3.9784 3.1730 0.0006 7 6 2.3444 4.8257 -0.0010 8 6 3.2532 5.8243 -0.0010 9 6 2.8066 7.2244 -0.0015 10 6 3.7472 8.2616 -0.0009 11 6 3.3244 9.5710 -0.0019 12 6 1.9641 9.8652 0.0019 13 8 1.5520 11.1568 0.0065 14 6 2.5050 12.1027 0.1235 15 1 3.5477 11.8213 0.1258 16 6 2.1466 13.4375 0.2408 17 7 0.8769 13.7802 0.2383 18 14 3.4673 14.7485 0.4036 19 1 4.8066 14.1074 0.3800 20 1 3.3570 15.7053 -0.7267 21 1 3.2883 15.4749 1.6864 22 6 1.0254 8.8375 -0.0040 23 6 1.4390 7.5252 -0.0031 24 6 3.6404 0.6528 -0.0061 25 7 3.6392 -0.6554 -0.0007 26 7 2.3096 -1.0959 -0.0005 27 6 1.8635 -2.4913 -0.0006 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 0.9340 2.6424 -0.0005 32 1 1.2892 5.0559 -0.0019 33 1 4.3084 5.5941 0.0003 34 1 4.8030 8.0342 0.0006 35 1 4.0491 10.3717 -0.0010 36 1 0.6262 14.7136 0.3207 37 1 -0.0291 9.0706 -0.0053 38 1 0.7100 6.7284 -0.0038 39 1 4.5166 1.2843 -0.0113 40 1 1.7525 -2.8372 -1.0282 41 1 2.6008 -3.1084 0.5129 42 1 0.9054 -2.5665 0.5136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176308225.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:54 Heat of formation + Delta-G solvation = 36.569401 kcal Electronic energy + Delta-G solvation = -25141.936809 eV Core-core repulsion = 21282.147852 eV Total energy + Delta-G solvation = -3859.788957 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.42043 -40.86397 -40.39409 -38.48270 -35.90676 -34.75443 -34.27239 -33.94361 -32.16511 -31.93564 -29.80689 -27.79821 -27.52431 -27.19937 -24.83074 -23.72663 -22.93948 -21.66977 -21.07971 -20.47708 -19.63097 -18.84006 -18.15883 -17.90618 -16.77580 -16.71008 -16.41043 -16.38623 -15.95382 -15.73228 -15.59103 -15.42891 -15.09750 -14.73235 -14.60326 -14.09478 -14.00150 -13.81948 -13.59397 -13.55730 -13.37774 -13.28529 -13.12991 -12.95601 -12.72517 -12.54070 -12.17663 -12.10101 -11.76181 -11.74741 -11.19351 -11.10924 -10.90586 -10.55833 -10.21391 -9.86671 -8.80628 -8.52514 -8.50080 -6.17335 -0.25981 0.61186 0.74289 1.12812 1.36670 1.44619 1.51967 1.54299 1.73725 2.15860 2.27927 2.50471 2.88165 3.19866 3.44489 3.69007 3.76624 3.81406 3.97428 4.09765 4.11088 4.30060 4.36413 4.42147 4.47726 4.49151 4.55630 4.67929 4.69973 4.78033 4.96638 4.97432 5.04873 5.08094 5.19211 5.22555 5.31564 5.36723 5.60324 5.66093 5.80058 5.83474 5.98780 6.09459 6.12977 6.51894 6.69942 6.93270 7.27732 7.70594 8.70768 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.042503 B = 0.001699 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.625432 B =16477.491943 C =17106.533169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.060 3.940 3 C -0.025 4.025 4 N -0.624 5.624 5 C 0.549 3.451 6 O -0.579 6.579 7 C -0.240 4.240 8 C 0.020 3.980 9 C -0.170 4.170 10 C -0.041 4.041 11 C -0.250 4.250 12 C 0.129 3.871 13 O -0.220 6.220 14 C -0.416 4.416 15 H 0.105 0.895 16 C -0.018 4.018 17 N -0.913 5.913 18 Si 1.018 2.982 19 H -0.252 1.252 20 H -0.268 1.268 21 H -0.268 1.268 22 C -0.207 4.207 23 C -0.036 4.036 24 C 0.030 3.970 25 N -0.325 5.325 26 N -0.373 5.373 27 C 0.094 3.906 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.426 0.574 32 H 0.158 0.842 33 H 0.126 0.874 34 H 0.143 0.857 35 H 0.123 0.877 36 H 0.275 0.725 37 H 0.124 0.876 38 H 0.164 0.836 39 H 0.187 0.813 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.381 -28.486 -0.182 28.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.071 4.071 3 C -0.130 4.130 4 N -0.270 5.270 5 C 0.341 3.659 6 O -0.461 6.461 7 C -0.261 4.261 8 C 0.000 4.000 9 C -0.171 4.171 10 C -0.059 4.059 11 C -0.269 4.269 12 C 0.077 3.923 13 O -0.125 6.125 14 C -0.492 4.492 15 H 0.122 0.878 16 C -0.217 4.217 17 N -0.550 5.550 18 Si 0.837 3.163 19 H -0.175 1.175 20 H -0.193 1.193 21 H -0.193 1.193 22 C -0.226 4.226 23 C -0.054 4.054 24 C -0.155 4.155 25 N -0.148 5.148 26 N -0.159 5.159 27 C -0.045 4.045 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.265 0.735 32 H 0.176 0.824 33 H 0.143 0.857 34 H 0.161 0.839 35 H 0.141 0.859 36 H 0.084 0.916 37 H 0.142 0.858 38 H 0.181 0.819 39 H 0.203 0.797 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.266 -29.557 -0.182 29.644 hybrid contribution -0.120 1.886 0.031 1.890 sum -2.386 -27.671 -0.151 27.774 Atomic orbital electron populations 1.20615 0.83324 1.05723 1.04874 1.21170 0.96002 0.85438 1.04453 1.17633 0.92659 0.85176 1.17516 1.42519 1.10696 1.01633 1.72149 1.18616 0.85135 0.86538 0.75570 1.90672 1.18371 1.85030 1.52027 1.22605 1.01795 0.89527 1.12155 1.22168 0.99861 0.90044 0.87948 1.18765 0.93360 0.92454 1.12507 1.21319 1.00048 0.90790 0.93704 1.21193 0.94947 0.98157 1.12633 1.20215 0.94035 0.85415 0.92620 1.83883 1.37099 1.11880 1.79645 1.21930 0.88699 0.85962 1.52600 0.87755 1.26583 1.00052 0.99456 0.95576 1.70148 1.18056 1.19144 1.47673 0.84534 0.76791 0.76393 0.78561 1.17487 1.19322 1.19330 1.20438 0.98671 0.91606 1.11864 1.21316 0.95386 0.94803 0.93855 1.24345 0.98494 0.91577 1.01124 1.77315 0.98969 1.12585 1.25928 1.48677 1.02810 1.07324 1.57092 1.22218 1.02459 0.75068 1.04780 0.88542 0.88528 0.88567 0.73507 0.82439 0.85664 0.83901 0.85930 0.91616 0.85826 0.81869 0.79679 0.89378 0.89169 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.42 9.94 71.23 0.71 0.29 16 2 C 0.06 0.94 6.98 41.37 0.29 1.23 16 3 C -0.03 -0.56 6.86 37.64 0.26 -0.30 16 4 N -0.62 -11.59 5.46 -307.98 -1.68 -13.27 16 5 C 0.55 13.40 7.71 86.32 0.67 14.06 16 6 O -0.58 -18.48 13.38 -4.49 -0.06 -18.54 16 7 C -0.24 -5.11 9.41 23.61 0.22 -4.88 16 8 C 0.02 0.50 9.45 23.82 0.23 0.73 16 9 C -0.17 -5.10 5.87 -20.13 -0.12 -5.22 16 10 C -0.04 -1.36 9.78 22.55 0.22 -1.13 16 11 C -0.25 -10.40 9.14 22.34 0.20 -10.20 16 12 C 0.13 6.08 6.66 22.72 0.15 6.23 16 13 O -0.22 -12.65 9.74 -20.27 -0.20 -12.84 16 14 C -0.42 -23.33 9.48 67.93 0.64 -22.69 16 15 H 0.11 5.37 5.18 -2.91 -0.02 5.35 16 16 C -0.02 -0.98 5.49 84.85 0.47 -0.52 16 17 N -0.91 -54.10 13.67 21.62 0.30 -53.81 16 18 Si 1.02 41.46 29.55 68.60 2.03 43.48 16 19 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 20 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 21 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 22 C -0.21 -8.01 9.97 22.35 0.22 -7.79 16 23 C -0.04 -1.07 9.40 22.55 0.21 -0.86 16 24 C 0.03 0.84 10.84 85.34 0.92 1.76 16 25 N -0.32 -8.56 12.56 -56.76 -0.71 -9.27 16 26 N -0.37 -6.64 4.04 -355.00 -1.43 -8.08 16 27 C 0.09 0.67 11.29 127.77 1.44 2.12 16 28 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.10 0.07 7.12 -2.39 -0.02 0.05 16 30 H 0.10 0.25 7.61 -2.38 -0.02 0.23 16 31 H 0.43 4.43 8.06 -92.71 -0.75 3.68 16 32 H 0.16 2.31 6.07 -2.91 -0.02 2.30 16 33 H 0.13 3.27 7.52 -2.91 -0.02 3.25 16 34 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 35 H 0.12 5.20 5.62 -2.91 -0.02 5.18 16 36 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 37 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 38 H 0.16 3.33 6.16 -2.91 -0.02 3.31 16 39 H 0.19 5.78 5.91 -2.91 -0.02 5.77 16 40 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.12 0.06 7.09 -2.39 -0.02 0.04 16 Total: -1.00 -80.23 363.19 5.31 -74.91 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.34 Total: 24.59 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 6.74 Total: -27.18 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -3.53 Total: -84.43 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.26 Total: -31.39 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -80.23 5.31 -74.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176308225.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.482 kcal (2) G-P(sol) polarization free energy of solvation -80.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds