Wall clock time and date at job start Tue Mar 31 2020 15:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30520 * 126.34444 * 2 1 4 4 N 1.28599 * 109.67235 * 180.02562 * 3 2 1 5 5 C 1.30523 * 109.67473 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.34854 * 179.97438 * 5 4 3 7 7 O 1.45204 * 109.46857 * 90.02506 * 6 5 4 8 8 C 1.34705 * 117.00381 * 179.97438 * 7 6 5 9 9 O 1.21471 * 119.99634 * 359.97438 * 8 7 6 10 10 C 1.47766 * 120.00485 * 180.02562 * 8 7 6 11 11 C 1.39971 * 120.02762 * 359.71739 * 10 8 7 12 12 C 1.38317 * 120.35004 * 179.78744 * 11 10 8 13 13 C 1.37757 * 120.41796 * 0.47694 * 12 11 10 14 14 C 1.40753 * 120.05063 * 359.78392 * 13 12 11 15 15 C 1.41446 * 120.17166 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99960 * 330.66819 * 15 14 13 17 17 C 1.39927 * 119.99814 * 150.67341 * 15 14 13 18 18 N 1.30838 * 120.00132 * 349.30776 * 17 15 14 19 19 Si 1.86797 * 120.00297 * 169.31120 * 17 15 14 20 20 H 1.48507 * 109.46888 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47457 * 119.99418 * 19 17 15 22 22 H 1.48498 * 109.47446 * 240.00088 * 19 17 15 23 23 C 1.39043 * 120.03319 * 180.02562 * 10 8 7 24 24 N 1.35494 * 107.30361 * 0.22703 * 5 4 3 25 25 C 1.46502 * 126.98119 * 179.77662 * 24 5 4 26 26 C 1.53001 * 117.49705 * 311.08773 * 25 24 5 27 27 C 1.52999 * 117.49598 * 242.42977 * 25 24 5 28 28 H 1.09000 * 109.47545 * 85.09440 * 1 2 3 29 29 H 1.09001 * 109.46655 * 205.09580 * 1 2 3 30 30 H 1.09004 * 109.47071 * 325.08898 * 1 2 3 31 31 H 1.09000 * 109.46971 * 330.03108 * 6 5 4 32 32 H 1.09000 * 109.47072 * 210.02171 * 6 5 4 33 33 H 1.07999 * 119.82265 * 0.02562 * 11 10 8 34 34 H 1.08007 * 119.78710 * 180.24157 * 12 11 10 35 35 H 1.07997 * 119.96934 * 179.76520 * 13 12 11 36 36 H 0.96996 * 120.00015 * 180.02562 * 18 17 15 37 37 H 1.08000 * 120.20521 * 359.94900 * 23 10 8 38 38 H 1.08997 * 115.55247 * 96.75332 * 25 24 5 39 39 H 1.09006 * 117.49530 * 0.02562 * 26 25 24 40 40 H 1.08999 * 117.50200 * 145.01426 * 26 25 24 41 41 H 1.09000 * 117.49446 * 214.97442 * 27 25 24 42 42 H 1.08993 * 117.50202 * 359.97304 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0513 0.0000 4 7 3.5124 0.6824 -0.0005 5 6 3.5808 -0.6211 -0.0015 6 6 4.8397 -1.4495 -0.0029 7 8 5.2445 -1.7169 1.3657 8 6 6.3599 -2.4516 1.5411 9 8 6.9771 -2.8581 0.5771 10 6 6.8319 -2.7640 2.9060 11 6 6.1238 -2.2917 4.0173 12 6 6.5573 -2.5838 5.2979 13 6 7.6956 -3.3342 5.4948 14 6 8.4239 -3.8132 4.3897 15 6 9.5928 -4.5844 4.5890 16 1 10.1950 -4.4337 5.4727 17 6 9.9690 -5.5424 3.6409 18 7 9.1422 -5.8745 2.6829 19 14 11.6516 -6.3472 3.7431 20 1 12.3913 -5.8014 4.9095 21 1 11.4896 -7.8147 3.9018 22 1 12.4119 -6.0647 2.4992 23 6 7.9834 -3.5218 3.0878 24 7 2.3101 -1.0913 -0.0066 25 6 1.8897 -2.4947 -0.0140 26 6 2.5439 -3.4227 -1.0396 27 6 1.0882 -2.9856 -1.2212 28 1 -0.3634 0.0879 -1.0239 29 1 -0.3633 -0.9307 0.4359 30 1 -0.3633 0.8428 0.5882 31 1 5.6322 -0.9051 -0.5164 32 1 4.6537 -2.3921 -0.5175 33 1 5.2322 -1.6994 3.8739 34 1 6.0017 -2.2180 6.1488 35 1 8.0296 -3.5547 6.4979 36 1 9.4028 -6.5388 2.0260 37 1 8.5354 -3.8849 2.2334 38 1 1.6417 -2.9163 0.9600 39 1 3.2873 -2.9890 -1.7085 40 1 2.7260 -4.4549 -0.7404 41 1 0.3130 -3.7306 -1.0414 42 1 0.8732 -2.2645 -2.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179570718.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:44 Heat of formation + Delta-G solvation = 25.624781 kcal Electronic energy + Delta-G solvation = -26772.032614 eV Core-core repulsion = 22911.769062 eV Total energy + Delta-G solvation = -3860.263552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.39977 -41.56579 -39.27677 -38.75529 -37.61966 -35.60444 -34.19459 -33.87208 -32.27299 -31.40516 -30.21538 -27.74011 -27.21103 -25.14296 -24.65117 -23.65820 -22.88289 -22.14389 -21.66951 -21.48608 -19.72017 -18.77764 -18.15948 -17.85576 -17.49801 -17.38489 -16.83005 -16.53218 -15.97721 -15.71518 -15.28365 -15.21289 -14.96355 -14.69357 -14.40418 -14.16207 -14.02577 -13.70243 -13.53301 -13.32488 -12.99380 -12.83115 -12.75269 -12.65754 -12.59482 -12.41022 -12.24695 -12.14528 -12.06984 -11.84914 -11.56824 -11.41860 -11.32779 -11.14316 -11.10597 -10.32527 -9.65348 -9.42968 -8.64163 -6.43021 0.05806 0.31534 0.93573 1.14798 1.39377 1.41962 1.43841 1.54556 1.72777 1.92558 2.20611 2.31529 2.73025 2.90664 3.21948 3.47565 3.49250 3.58607 3.64304 3.74981 3.85335 4.08082 4.09266 4.37894 4.54209 4.55018 4.55551 4.62803 4.66283 4.73112 4.78299 4.81730 4.89481 4.99674 5.01876 5.06284 5.07706 5.10869 5.28012 5.41084 5.76343 5.76840 5.84123 5.99747 6.19474 6.51134 6.68295 6.85632 6.86727 7.48238 8.33096 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019706 B = 0.002772 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.580213 B =10097.234167 C =10651.716189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.198 3.802 3 N -0.337 5.337 4 N -0.306 5.306 5 C 0.164 3.836 6 C 0.154 3.846 7 O -0.348 6.348 8 C 0.523 3.477 9 O -0.535 6.535 10 C -0.129 4.129 11 C -0.177 4.177 12 C -0.101 4.101 13 C -0.196 4.196 14 C 0.066 3.934 15 C -0.493 4.493 16 H 0.086 0.914 17 C 0.028 3.972 18 N -0.833 5.833 19 Si 0.986 3.014 20 H -0.253 1.253 21 H -0.265 1.265 22 H -0.271 1.271 23 C -0.109 4.109 24 N -0.431 5.431 25 C 0.017 3.983 26 C -0.182 4.182 27 C -0.125 4.125 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.123 0.877 34 H 0.139 0.861 35 H 0.117 0.883 36 H 0.287 0.713 37 H 0.110 0.890 38 H 0.155 0.845 39 H 0.093 0.907 40 H 0.129 0.871 41 H 0.149 0.851 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.594 1.529 -6.754 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.069 4.069 3 N -0.179 5.179 4 N -0.148 5.148 5 C -0.103 4.103 6 C 0.078 3.922 7 O -0.264 6.264 8 C 0.370 3.630 9 O -0.426 6.426 10 C -0.130 4.130 11 C -0.196 4.196 12 C -0.119 4.119 13 C -0.215 4.215 14 C 0.064 3.936 15 C -0.522 4.522 16 H 0.104 0.896 17 C -0.186 4.186 18 N -0.459 5.459 19 Si 0.806 3.194 20 H -0.177 1.177 21 H -0.190 1.190 22 H -0.196 1.196 23 C -0.129 4.129 24 N -0.121 5.121 25 C -0.086 4.086 26 C -0.220 4.220 27 C -0.163 4.163 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.141 0.859 34 H 0.157 0.843 35 H 0.135 0.865 36 H 0.098 0.902 37 H 0.128 0.872 38 H 0.172 0.828 39 H 0.111 0.889 40 H 0.147 0.853 41 H 0.167 0.833 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.028 2.684 -7.254 19.618 hybrid contribution 0.824 -1.526 -0.264 1.754 sum -17.204 1.158 -7.518 18.811 Atomic orbital electron populations 1.20533 0.79612 1.06156 1.05960 1.25832 0.98956 0.81547 1.00562 1.74226 0.96216 1.25627 1.21786 1.74184 1.13616 1.09007 1.17968 1.23920 0.87139 0.91780 1.07505 1.21049 0.90536 0.98893 0.81727 1.86602 1.42465 1.66255 1.31064 1.21630 0.77124 0.73717 0.90492 1.90760 1.56879 1.51789 1.43151 1.19019 0.99453 1.05530 0.89028 1.20905 1.01680 1.05325 0.91736 1.20941 0.96413 0.98061 0.96493 1.21568 0.97095 1.04804 0.98063 1.17919 0.93335 0.91421 0.90959 1.19863 1.08081 1.17268 1.07029 0.89573 1.26811 1.02067 0.96447 0.93225 1.69837 1.36674 1.26646 1.12790 0.85093 0.76696 0.78133 0.79434 1.17651 1.18975 1.19559 1.21502 0.95507 0.97364 0.98530 1.45687 1.05042 1.08706 1.52711 1.22525 1.09652 0.77088 0.99329 1.23568 0.98003 1.00567 0.99817 1.23568 0.94616 1.02696 0.95381 0.87272 0.87667 0.88007 0.88221 0.87386 0.85910 0.84311 0.86453 0.90236 0.87196 0.82783 0.88870 0.85268 0.83269 0.87425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.66 10.28 71.24 0.73 0.07 16 2 C 0.20 4.50 8.01 137.98 1.11 5.61 16 3 N -0.34 -10.75 12.21 -50.15 -0.61 -11.36 16 4 N -0.31 -10.92 12.21 -50.15 -0.61 -11.54 16 5 C 0.16 5.05 7.56 137.98 1.04 6.09 16 6 C 0.15 4.87 5.81 71.23 0.41 5.29 16 7 O -0.35 -13.32 9.44 -56.14 -0.53 -13.85 16 8 C 0.52 23.39 7.90 70.34 0.56 23.94 16 9 O -0.53 -25.88 16.12 19.93 0.32 -25.55 16 10 C -0.13 -6.20 5.87 -20.14 -0.12 -6.32 16 11 C -0.18 -7.54 9.62 22.71 0.22 -7.32 16 12 C -0.10 -4.10 10.01 22.17 0.22 -3.88 16 13 C -0.20 -8.93 9.78 22.77 0.22 -8.71 16 14 C 0.07 3.47 5.54 -21.32 -0.12 3.35 16 15 C -0.49 -25.84 9.06 23.47 0.21 -25.63 16 16 H 0.09 4.26 7.87 -2.91 -0.02 4.24 16 17 C 0.03 1.42 5.25 85.25 0.45 1.87 16 18 N -0.83 -44.34 10.87 21.82 0.24 -44.10 16 19 Si 0.99 38.23 29.57 68.60 2.03 40.26 16 20 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 21 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 22 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 23 C -0.11 -5.88 8.20 23.02 0.19 -5.69 16 24 N -0.43 -9.95 3.03 -481.74 -1.46 -11.41 16 25 C 0.02 0.25 5.99 44.99 0.27 0.52 16 26 C -0.18 -2.48 8.96 30.62 0.27 -2.21 16 27 C -0.13 -0.96 10.44 30.62 0.32 -0.64 16 28 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.10 0.58 7.83 -2.39 -0.02 0.56 16 30 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 32 H 0.11 2.99 5.39 -2.39 -0.01 2.97 16 33 H 0.12 4.70 7.59 -2.91 -0.02 4.68 16 34 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 35 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 36 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 37 H 0.11 6.47 5.84 -2.91 -0.02 6.45 16 38 H 0.15 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.09 1.54 7.00 -2.38 -0.02 1.52 16 40 H 0.13 1.54 8.14 -2.39 -0.02 1.53 16 41 H 0.15 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -72.80 365.98 6.42 -66.38 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 1.06 Total: 24.83 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 5.99 Total: -13.65 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -2.45 Total: -78.41 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -0.21 Total: -39.41 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.26 kcal Total: -72.80 6.42 -66.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179570718.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.000 kcal (2) G-P(sol) polarization free energy of solvation -72.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds