Wall clock time and date at job start Tue Mar 31 2020 15:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37968 * 120.46330 * 2 1 4 4 N 1.31950 * 120.83416 * 180.02562 * 3 2 1 5 5 C 1.31989 * 121.90028 * 359.97438 * 4 3 2 6 6 C 1.37917 * 120.83838 * 359.97438 * 5 4 3 7 7 C 1.39383 * 120.46440 * 180.02562 * 2 1 3 8 8 N 1.39538 * 120.86010 * 359.97438 * 7 2 1 9 9 C 1.34771 * 120.00095 * 145.83539 * 8 7 2 10 10 O 1.21583 * 119.99939 * 4.26562 * 9 8 7 11 11 N 1.34775 * 120.00291 * 184.27099 * 9 8 7 12 12 C 1.46504 * 119.99997 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.46771 * 179.97438 * 12 11 9 14 14 C 1.38297 * 119.93418 * 269.72368 * 13 12 11 15 15 C 1.38103 * 120.07114 * 179.72926 * 14 13 12 16 16 C 1.38881 * 119.92960 * 0.56676 * 15 14 13 17 17 O 1.35751 * 120.07081 * 179.68298 * 16 15 14 18 18 C 1.34825 * 116.99987 * 185.62015 * 17 16 15 19 19 H 1.07995 * 120.00141 * 354.94251 * 18 17 16 20 20 C 1.38655 * 119.99996 * 174.93676 * 18 17 16 21 21 N 1.31561 * 119.99475 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00332 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47053 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47230 * 119.99782 * 22 20 18 25 25 H 1.48496 * 109.47340 * 240.00136 * 22 20 18 26 26 C 1.38880 * 119.85756 * 359.70582 * 16 15 14 27 27 C 1.38099 * 119.93742 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.47008 * 269.97714 * 1 2 3 29 29 H 1.08996 * 109.47602 * 29.98010 * 1 2 3 30 30 H 1.09005 * 109.47100 * 149.98562 * 1 2 3 31 31 H 1.07994 * 119.57943 * 0.04161 * 3 2 1 32 32 H 1.08003 * 119.58028 * 179.97438 * 5 4 3 33 33 H 1.07997 * 120.46595 * 179.97438 * 6 5 4 34 34 H 0.97002 * 119.99986 * 325.83773 * 8 7 2 35 35 H 0.97001 * 119.99629 * 359.97438 * 11 9 8 36 36 H 1.08995 * 109.46921 * 299.99428 * 12 11 9 37 37 H 1.08994 * 109.47125 * 59.99561 * 12 11 9 38 38 H 1.08003 * 119.96374 * 359.97438 * 14 13 12 39 39 H 1.08000 * 120.03454 * 180.27853 * 15 14 13 40 40 H 0.97005 * 119.99138 * 179.97438 * 21 20 18 41 41 H 1.08003 * 120.02771 * 179.97438 * 26 16 15 42 42 H 1.07993 * 119.96694 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.1892 0.0000 4 7 3.5259 1.1978 -0.0005 5 6 4.2306 0.0817 -0.0005 6 6 3.6069 -1.1483 0.0005 7 6 2.2136 -1.2014 -0.0005 8 7 1.5441 -2.4256 -0.0005 9 6 2.0677 -3.4801 -0.6564 10 8 3.1599 -3.3875 -1.1825 11 7 1.3807 -4.6373 -0.7293 12 6 1.9503 -5.7838 -1.4418 13 6 0.9906 -6.9437 -1.3752 14 6 1.0746 -7.8500 -0.3340 15 6 0.1930 -8.9109 -0.2672 16 6 -0.7712 -9.0739 -1.2534 17 8 -1.6351 -10.1193 -1.1940 18 6 -2.4681 -10.2852 -2.2411 19 1 -2.4854 -9.5566 -3.0381 20 6 -3.3024 -11.3914 -2.2948 21 7 -3.2815 -12.2787 -1.3237 22 14 -4.4560 -11.6217 -3.7458 23 1 -4.2877 -10.4930 -4.6960 24 1 -4.1375 -12.8987 -4.4336 25 1 -5.8594 -11.6568 -3.2617 26 6 -0.8492 -8.1652 -2.3008 27 6 0.0316 -7.1032 -2.3590 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8899 -0.5141 31 1 1.6672 2.1249 0.0007 32 1 5.3095 0.1325 -0.0014 33 1 4.1894 -2.0577 0.0001 34 1 0.7017 -2.5177 0.4715 35 1 0.5095 -4.7113 -0.3093 36 1 2.1235 -5.5144 -2.4836 37 1 2.8950 -6.0671 -0.9778 38 1 1.8279 -7.7257 0.4299 39 1 0.2562 -9.6158 0.5487 40 1 -3.8654 -13.0524 -1.3611 41 1 -1.5977 -8.2895 -3.0695 42 1 -0.0284 -6.3966 -3.1735 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179860392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:15 Heat of formation + Delta-G solvation = 5.151077 kcal Electronic energy + Delta-G solvation = -25607.942055 eV Core-core repulsion = 21746.790697 eV Total energy + Delta-G solvation = -3861.151358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.20228 -39.72427 -39.13478 -37.05696 -35.68683 -34.63323 -33.13885 -32.45186 -31.22624 -30.35636 -29.68447 -27.52139 -26.03763 -24.99160 -23.65748 -22.28737 -22.13408 -21.18771 -20.74317 -18.97398 -18.26261 -18.12894 -17.09811 -16.53658 -15.85493 -15.71221 -15.28967 -14.88035 -14.69561 -14.61281 -14.44576 -14.38736 -14.02252 -13.72237 -13.60446 -13.55793 -13.05774 -12.94908 -12.86209 -12.81046 -12.26249 -12.01398 -11.76256 -11.47685 -11.09152 -11.04606 -10.86386 -10.76591 -10.52521 -10.52108 -9.65089 -9.49838 -9.26322 -9.16876 -8.98035 -8.72525 -8.36766 -7.41591 -6.59346 -4.18215 0.87705 1.01867 1.87150 2.05250 2.50363 2.90569 3.03655 3.05622 3.11049 3.60814 3.84870 3.94784 4.24573 4.44394 4.50445 4.54179 4.73992 4.94636 5.01305 5.07741 5.14677 5.18562 5.27708 5.33584 5.48768 5.57340 5.57796 5.66454 5.72062 5.78438 5.87535 6.04639 6.11620 6.26971 6.33887 6.51846 6.55864 6.59774 6.72562 6.89453 7.07150 7.19054 7.28112 7.62894 7.68302 7.79341 7.85298 8.26179 8.86026 9.53316 10.58032 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026182 B = 0.001930 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.177637 B =14506.901074 C =15053.772390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.172 4.172 3 C 0.114 3.886 4 N -0.499 5.499 5 C 0.107 3.893 6 C -0.171 4.171 7 C 0.212 3.788 8 N -0.684 5.684 9 C 0.701 3.299 10 O -0.575 6.575 11 N -0.729 5.729 12 C 0.197 3.803 13 C -0.218 4.218 14 C -0.052 4.052 15 C -0.196 4.196 16 C 0.161 3.839 17 O -0.172 6.172 18 C -0.394 4.394 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.858 5.858 22 Si 0.943 3.057 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.238 4.238 27 C -0.049 4.049 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.153 0.847 34 H 0.410 0.590 35 H 0.400 0.600 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.271 0.729 41 H 0.129 0.871 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.682 20.487 3.278 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.177 4.177 3 C -0.044 4.044 4 N -0.209 5.209 5 C -0.049 4.049 6 C -0.193 4.193 7 C 0.108 3.892 8 N -0.332 5.332 9 C 0.401 3.599 10 O -0.452 6.452 11 N -0.383 5.383 12 C 0.074 3.926 13 C -0.220 4.220 14 C -0.071 4.071 15 C -0.215 4.215 16 C 0.106 3.894 17 O -0.074 6.074 18 C -0.470 4.470 19 H 0.112 0.888 20 C -0.165 4.165 21 N -0.492 5.492 22 Si 0.767 3.233 23 H -0.190 1.190 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.257 4.257 27 C -0.067 4.067 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.170 0.830 34 H 0.246 0.754 35 H 0.234 0.766 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.146 0.854 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.942 20.816 2.973 22.477 hybrid contribution -1.941 -1.156 -0.366 2.288 sum 6.002 19.659 2.607 20.720 Atomic orbital electron populations 1.20650 0.90033 1.03457 1.02546 1.20730 0.97591 0.92751 1.06664 1.22455 0.89843 0.96691 0.95376 1.67665 1.08060 1.31594 1.13611 1.22643 1.00379 0.87043 0.94860 1.22349 0.93543 1.00942 1.02505 1.17610 0.91559 0.84104 0.95975 1.42587 1.26703 1.08753 1.55156 1.16006 0.84349 0.80215 0.79326 1.90926 1.20043 1.82697 1.51487 1.45591 1.22634 1.11141 1.58937 1.19911 0.94727 0.81705 0.96211 1.19168 1.02869 0.99857 1.00098 1.20534 0.97016 0.93211 0.96368 1.20220 0.98248 1.01680 1.01362 1.19449 0.88930 0.88039 0.92940 1.83976 1.41536 1.40255 1.41663 1.21412 1.16891 1.09058 0.99609 0.88816 1.25339 0.97926 0.94555 0.98683 1.70049 1.36971 1.10960 1.31186 0.85617 0.79204 0.78894 0.79559 1.19022 1.20009 1.20035 1.21166 1.04263 0.98121 1.02145 1.20648 0.93351 0.96126 0.96621 0.90885 0.90697 0.91560 0.82681 0.82560 0.82966 0.75411 0.76575 0.91434 0.91366 0.86921 0.86331 0.91861 0.85381 0.87377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 9.55 36.00 0.34 -0.29 16 2 C -0.17 -1.50 5.91 -104.30 -0.62 -2.12 16 3 C 0.11 1.04 10.85 -17.60 -0.19 0.85 16 4 N -0.50 -5.47 10.36 -13.34 -0.14 -5.61 16 5 C 0.11 1.11 11.17 -17.60 -0.20 0.91 16 6 C -0.17 -1.92 8.78 -39.26 -0.34 -2.27 16 7 C 0.21 2.21 6.33 -83.48 -0.53 1.68 16 8 N -0.68 -6.41 4.81 -14.07 -0.07 -6.48 16 9 C 0.70 8.51 8.43 -86.93 -0.73 7.78 16 10 O -0.57 -8.94 13.80 5.29 0.07 -8.86 16 11 N -0.73 -8.06 5.55 -66.42 -0.37 -8.43 16 12 C 0.20 2.52 5.80 -5.19 -0.03 2.49 16 13 C -0.22 -3.25 5.25 -104.58 -0.55 -3.80 16 14 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 15 C -0.20 -3.77 9.99 -39.39 -0.39 -4.16 16 16 C 0.16 3.61 6.65 -39.11 -0.26 3.35 16 17 O -0.17 -4.65 9.76 0.06 0.00 -4.64 16 18 C -0.39 -10.46 9.49 30.89 0.29 -10.17 16 19 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 20 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 21 N -0.86 -24.18 13.67 55.48 0.76 -23.42 16 22 Si 0.94 19.63 29.55 -169.99 -5.02 14.61 16 23 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 C -0.24 -4.72 9.17 -39.39 -0.36 -5.08 16 27 C -0.05 -0.79 9.69 -39.61 -0.38 -1.18 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 30 H 0.07 0.39 7.28 -51.93 -0.38 0.01 16 31 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 32 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 33 H 0.15 1.87 6.28 -52.49 -0.33 1.54 16 34 H 0.41 2.63 7.96 -40.82 -0.33 2.31 16 35 H 0.40 3.73 8.48 -40.82 -0.35 3.38 16 36 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 39 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 40 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.13 2.58 5.64 -52.48 -0.30 2.28 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 362.91 15.07 5.47 5.47 Total: -1.00 -32.05 362.91 -8.61 -40.65 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -4.88 Total: 8.97 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -4.43 Total: -12.25 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.18 Total: -43.94 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.07 Total: -13.51 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.05 -8.61 -40.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179860392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.803 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds