Wall clock time and date at job start Tue Mar 31 2020 15:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37968 * 120.46330 * 2 1 4 4 N 1.31950 * 120.83416 * 180.02562 * 3 2 1 5 5 C 1.31989 * 121.90028 * 359.97438 * 4 3 2 6 6 C 1.37917 * 120.83838 * 359.97438 * 5 4 3 7 7 C 1.39383 * 120.46440 * 180.02562 * 2 1 3 8 8 N 1.39538 * 120.86010 * 359.97438 * 7 2 1 9 9 C 1.34771 * 120.00095 * 145.83539 * 8 7 2 10 10 O 1.21583 * 119.99939 * 4.26562 * 9 8 7 11 11 N 1.34775 * 120.00291 * 184.27099 * 9 8 7 12 12 C 1.46504 * 119.99997 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.46771 * 179.97438 * 12 11 9 14 14 C 1.38297 * 119.93418 * 269.72368 * 13 12 11 15 15 C 1.38103 * 120.07114 * 179.72926 * 14 13 12 16 16 C 1.38881 * 119.92960 * 0.56676 * 15 14 13 17 17 O 1.35751 * 120.07081 * 179.68298 * 16 15 14 18 18 C 1.34825 * 116.99987 * 185.62015 * 17 16 15 19 19 H 1.07995 * 120.00141 * 354.94251 * 18 17 16 20 20 C 1.38655 * 119.99996 * 174.93676 * 18 17 16 21 21 N 1.31561 * 119.99475 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00332 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47053 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47230 * 119.99782 * 22 20 18 25 25 H 1.48496 * 109.47340 * 240.00136 * 22 20 18 26 26 C 1.38880 * 119.85756 * 359.70582 * 16 15 14 27 27 C 1.38099 * 119.93742 * 0.02562 * 26 16 15 28 28 H 1.09000 * 109.47008 * 269.97714 * 1 2 3 29 29 H 1.08996 * 109.47602 * 29.98010 * 1 2 3 30 30 H 1.09005 * 109.47100 * 149.98562 * 1 2 3 31 31 H 1.07994 * 119.57943 * 0.04161 * 3 2 1 32 32 H 1.08003 * 119.58028 * 179.97438 * 5 4 3 33 33 H 1.07997 * 120.46595 * 179.97438 * 6 5 4 34 34 H 0.97002 * 119.99986 * 325.83773 * 8 7 2 35 35 H 0.97001 * 119.99629 * 359.97438 * 11 9 8 36 36 H 1.08995 * 109.46921 * 299.99428 * 12 11 9 37 37 H 1.08994 * 109.47125 * 59.99561 * 12 11 9 38 38 H 1.08003 * 119.96374 * 359.97438 * 14 13 12 39 39 H 1.08000 * 120.03454 * 180.27853 * 15 14 13 40 40 H 0.97005 * 119.99138 * 179.97438 * 21 20 18 41 41 H 1.08003 * 120.02771 * 179.97438 * 26 16 15 42 42 H 1.07993 * 119.96694 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.1892 0.0000 4 7 3.5259 1.1978 -0.0005 5 6 4.2306 0.0817 -0.0005 6 6 3.6069 -1.1483 0.0005 7 6 2.2136 -1.2014 -0.0005 8 7 1.5441 -2.4256 -0.0005 9 6 2.0677 -3.4801 -0.6564 10 8 3.1599 -3.3875 -1.1825 11 7 1.3807 -4.6373 -0.7293 12 6 1.9503 -5.7838 -1.4418 13 6 0.9906 -6.9437 -1.3752 14 6 1.0746 -7.8500 -0.3340 15 6 0.1930 -8.9109 -0.2672 16 6 -0.7712 -9.0739 -1.2534 17 8 -1.6351 -10.1193 -1.1940 18 6 -2.4681 -10.2852 -2.2411 19 1 -2.4854 -9.5566 -3.0381 20 6 -3.3024 -11.3914 -2.2948 21 7 -3.2815 -12.2787 -1.3237 22 14 -4.4560 -11.6217 -3.7458 23 1 -4.2877 -10.4930 -4.6960 24 1 -4.1375 -12.8987 -4.4336 25 1 -5.8594 -11.6568 -3.2617 26 6 -0.8492 -8.1652 -2.3008 27 6 0.0316 -7.1032 -2.3590 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8899 -0.5141 31 1 1.6672 2.1249 0.0007 32 1 5.3095 0.1325 -0.0014 33 1 4.1894 -2.0577 0.0001 34 1 0.7017 -2.5177 0.4715 35 1 0.5095 -4.7113 -0.3093 36 1 2.1235 -5.5144 -2.4836 37 1 2.8950 -6.0671 -0.9778 38 1 1.8279 -7.7257 0.4299 39 1 0.2562 -9.6158 0.5487 40 1 -3.8654 -13.0524 -1.3611 41 1 -1.5977 -8.2895 -3.0695 42 1 -0.0284 -6.3966 -3.1735 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179860392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:14 Heat of formation + Delta-G solvation = -16.201951 kcal Electronic energy + Delta-G solvation = -25608.867992 eV Core-core repulsion = 21746.790697 eV Total energy + Delta-G solvation = -3862.077295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.03589 -40.90668 -40.41051 -38.57816 -36.57006 -35.77156 -34.29944 -33.80008 -32.20827 -31.82689 -30.89830 -28.15062 -27.65978 -26.38730 -24.54097 -23.65342 -23.00434 -22.21010 -22.05384 -19.95984 -19.79638 -19.12412 -18.75829 -17.35262 -16.80650 -16.72148 -16.40780 -16.30981 -16.08958 -15.77272 -15.53932 -15.31365 -15.18685 -15.16505 -14.87605 -14.40807 -14.30816 -14.20203 -13.70792 -13.57846 -13.39294 -13.30681 -13.04824 -12.70033 -12.57541 -12.35975 -12.26104 -12.09575 -11.92944 -11.51459 -11.20736 -10.83027 -10.43486 -10.24310 -9.89929 -9.81763 -9.49798 -9.03254 -8.49439 -6.17460 0.15486 0.23893 0.50086 0.57361 1.35708 1.41373 1.53313 1.55463 1.97602 2.16085 2.76629 2.87040 3.06618 3.26018 3.48633 3.60116 3.83540 3.86585 3.90191 4.02686 4.09791 4.16904 4.35255 4.45306 4.56115 4.61775 4.71101 4.80272 4.80883 4.84316 4.92721 5.03481 5.13757 5.14397 5.22352 5.25914 5.32469 5.39540 5.51089 5.68633 5.73990 5.82063 5.83111 6.00805 6.15481 6.84805 6.95717 7.06054 7.34919 7.74907 8.73480 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.026182 B = 0.001930 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.177637 B =14506.901074 C =15053.772390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.165 4.165 3 C 0.107 3.893 4 N -0.519 5.519 5 C 0.098 3.902 6 C -0.186 4.186 7 C 0.194 3.806 8 N -0.669 5.669 9 C 0.702 3.298 10 O -0.609 6.609 11 N -0.720 5.720 12 C 0.203 3.797 13 C -0.182 4.182 14 C -0.041 4.041 15 C -0.205 4.205 16 C 0.123 3.877 17 O -0.229 6.229 18 C -0.412 4.412 19 H 0.104 0.896 20 C -0.023 4.023 21 N -0.918 5.918 22 Si 1.018 2.982 23 H -0.250 1.250 24 H -0.271 1.271 25 H -0.269 1.269 26 C -0.244 4.244 27 C -0.043 4.043 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.183 0.817 32 H 0.172 0.828 33 H 0.138 0.862 34 H 0.425 0.575 35 H 0.411 0.589 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.148 0.852 39 H 0.115 0.885 40 H 0.273 0.727 41 H 0.120 0.880 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.921 23.614 2.667 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.170 4.170 3 C -0.050 4.050 4 N -0.230 5.230 5 C -0.057 4.057 6 C -0.209 4.209 7 C 0.090 3.910 8 N -0.318 5.318 9 C 0.402 3.598 10 O -0.489 6.489 11 N -0.375 5.375 12 C 0.080 3.920 13 C -0.184 4.184 14 C -0.059 4.059 15 C -0.225 4.225 16 C 0.072 3.928 17 O -0.135 6.135 18 C -0.488 4.488 19 H 0.122 0.878 20 C -0.220 4.220 21 N -0.556 5.556 22 Si 0.837 3.163 23 H -0.174 1.174 24 H -0.196 1.196 25 H -0.194 1.194 26 C -0.264 4.264 27 C -0.062 4.062 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.200 0.800 32 H 0.189 0.811 33 H 0.155 0.845 34 H 0.264 0.736 35 H 0.247 0.753 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.166 0.834 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.137 0.863 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.187 24.011 2.387 25.481 hybrid contribution -1.715 -1.767 -0.085 2.464 sum 6.471 22.244 2.302 23.280 Atomic orbital electron populations 1.20739 0.87693 1.04255 1.03867 1.21016 0.99176 0.91791 1.04996 1.22989 0.89487 0.98066 0.94473 1.67707 1.09193 1.31797 1.14271 1.22885 1.01290 0.86763 0.94806 1.22317 0.94202 1.00672 1.03724 1.17817 0.91557 0.84908 0.96727 1.42344 1.27014 1.07845 1.54603 1.16035 0.83872 0.80660 0.79187 1.90920 1.21635 1.83314 1.52987 1.45261 1.22989 1.10455 1.58777 1.19789 0.94139 0.81152 0.96913 1.19447 1.01247 0.99443 0.98236 1.20889 0.96321 0.91569 0.97155 1.20457 0.98390 1.02862 1.00752 1.20014 0.89728 0.88096 0.94940 1.83947 1.43801 1.42958 1.42799 1.21864 1.17223 1.09634 1.00086 0.87846 1.26580 0.99676 0.94037 1.01741 1.70188 1.39194 1.12232 1.34003 0.84535 0.76687 0.79185 0.75873 1.17365 1.19572 1.19369 1.21246 1.05009 0.98790 1.01326 1.20945 0.92283 0.95258 0.97686 0.89171 0.89249 0.91442 0.79966 0.81081 0.84460 0.73604 0.75259 0.91081 0.90642 0.83388 0.86723 0.91813 0.86264 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 9.55 71.23 0.68 -0.18 16 2 C -0.16 -2.43 5.91 -19.65 -0.12 -2.55 16 3 C 0.11 1.69 10.85 84.61 0.92 2.61 16 4 N -0.52 -10.62 10.36 -196.12 -2.03 -12.65 16 5 C 0.10 1.95 11.17 84.59 0.95 2.90 16 6 C -0.19 -4.04 8.78 22.48 0.20 -3.85 16 7 C 0.19 3.67 6.33 38.48 0.24 3.92 16 8 N -0.67 -10.79 4.81 -316.68 -1.52 -12.32 16 9 C 0.70 15.18 8.43 179.06 1.51 16.69 16 10 O -0.61 -17.84 13.80 -3.98 -0.05 -17.89 16 11 N -0.72 -13.30 5.55 -482.32 -2.68 -15.98 16 12 C 0.20 4.39 5.80 85.63 0.50 4.89 16 13 C -0.18 -4.78 5.25 -19.83 -0.10 -4.89 16 14 C -0.04 -1.17 9.69 22.25 0.22 -0.96 16 15 C -0.21 -7.87 9.99 22.39 0.22 -7.65 16 16 C 0.12 5.67 6.65 22.58 0.15 5.82 16 17 O -0.23 -13.11 9.76 -22.70 -0.22 -13.33 16 18 C -0.41 -22.93 9.49 67.92 0.64 -22.29 16 19 H 0.10 5.25 5.20 -2.91 -0.02 5.23 16 20 C -0.02 -1.23 5.49 84.83 0.47 -0.77 16 21 N -0.92 -54.73 13.67 21.61 0.30 -54.43 16 22 Si 1.02 41.30 29.55 68.60 2.03 43.32 16 23 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 24 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 25 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 26 C -0.24 -9.63 9.17 22.39 0.21 -9.43 16 27 C -0.04 -1.29 9.69 22.25 0.22 -1.07 16 28 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.09 0.49 8.09 -2.39 -0.02 0.47 16 30 H 0.07 0.54 7.28 -2.38 -0.02 0.53 16 31 H 0.18 1.71 8.06 -2.91 -0.02 1.68 16 32 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 33 H 0.14 3.36 6.28 -2.91 -0.02 3.34 16 34 H 0.42 4.08 7.96 -92.71 -0.74 3.34 16 35 H 0.41 6.00 8.48 -92.71 -0.79 5.22 16 36 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 37 H 0.08 1.63 8.08 -2.39 -0.02 1.61 16 38 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 40 H 0.27 14.87 8.31 -92.70 -0.77 14.10 16 41 H 0.12 4.85 5.64 -2.91 -0.02 4.84 16 42 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -74.75 362.91 2.27 -72.48 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: -0.44 Total: 27.60 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 6.89 Total: -16.81 kcal Atomic # 7 Polarization: -89.44 SS G_CDS: -5.94 Total: -95.38 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.28 Total: -31.22 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.32 kcal Total: -74.75 2.27 -72.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179860392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.278 kcal (2) G-P(sol) polarization free energy of solvation -74.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds