Wall clock time and date at job start Tue Mar 31 2020 14:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38850 * 120.75331 * 2 1 4 4 C 1.38062 * 119.30826 * 180.25253 * 3 2 1 5 5 N 1.31942 * 120.85108 * 359.77774 * 4 3 2 6 6 C 1.32346 * 121.63731 * 359.97438 * 5 4 3 7 7 N 1.39394 * 119.69788 * 180.02562 * 6 5 4 8 8 C 1.34771 * 119.99960 * 354.87168 * 7 6 5 9 9 O 1.21582 * 120.00213 * 5.10839 * 8 7 6 10 10 N 1.34773 * 120.00236 * 185.11371 * 8 7 6 11 11 C 1.46500 * 120.00516 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47360 * 180.02562 * 11 10 8 13 13 C 1.38305 * 119.92721 * 269.72419 * 12 11 10 14 14 C 1.38105 * 120.06783 * 179.72161 * 13 12 11 15 15 C 1.38881 * 119.92739 * 0.57201 * 14 13 12 16 16 O 1.35753 * 120.06456 * 179.68126 * 15 14 13 17 17 C 1.34835 * 116.99546 * 185.55415 * 16 15 14 18 18 H 1.07995 * 120.00239 * 354.93736 * 17 16 15 19 19 C 1.38651 * 119.99541 * 174.94548 * 17 16 15 20 20 N 1.31556 * 120.00252 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99764 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47357 * 59.99704 * 21 19 17 23 23 H 1.48500 * 109.47138 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46793 * 299.99769 * 21 19 17 25 25 C 1.38878 * 119.86251 * 359.69954 * 15 14 13 26 26 C 1.38100 * 119.93448 * 0.02562 * 25 15 14 27 27 C 1.38347 * 120.75047 * 179.78207 * 2 1 3 28 28 H 1.09008 * 109.47194 * 270.21995 * 1 2 3 29 29 H 1.09000 * 109.47271 * 30.21775 * 1 2 3 30 30 H 1.08998 * 109.47739 * 150.21931 * 1 2 3 31 31 H 1.07999 * 120.34174 * 0.05312 * 3 2 1 32 32 H 1.08001 * 119.56591 * 179.79688 * 4 3 2 33 33 H 0.96998 * 119.99761 * 174.86609 * 7 6 5 34 34 H 0.97007 * 119.99863 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.46681 * 299.99696 * 11 10 8 36 36 H 1.08988 * 109.47033 * 59.99404 * 11 10 8 37 37 H 1.07998 * 119.96470 * 359.97438 * 13 12 11 38 38 H 1.07994 * 120.03483 * 180.27290 * 14 13 12 39 39 H 0.97004 * 120.00101 * 180.02562 * 20 19 17 40 40 H 1.08007 * 120.03143 * 179.97438 * 25 15 14 41 41 H 1.07994 * 119.96419 * 179.97438 * 26 25 15 42 42 H 1.08005 * 120.44743 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1932 0.0000 4 6 3.5972 1.1584 -0.0053 5 7 4.2450 0.0090 -0.0060 6 6 3.6043 -1.1490 -0.0011 7 7 4.3294 -2.3395 -0.0014 8 6 5.6723 -2.3105 -0.1111 9 8 6.2590 -1.2456 -0.1161 10 7 6.3650 -3.4619 -0.2152 11 6 7.8249 -3.4304 -0.3338 12 6 8.3511 -4.8389 -0.4354 13 6 8.6955 -5.5312 0.7112 14 6 9.1726 -6.8242 0.6218 15 6 9.3177 -7.4247 -0.6220 16 8 9.7925 -8.6932 -0.7135 17 6 10.0173 -9.1747 -1.9527 18 1 9.7435 -8.5888 -2.8176 19 6 10.6000 -10.4221 -2.1166 20 7 10.9339 -11.1357 -1.0631 21 14 10.9108 -11.0895 -3.8335 22 1 11.8192 -10.1703 -4.5649 23 1 11.5386 -12.4318 -3.7366 24 1 9.6222 -11.1967 -4.5636 25 6 8.9763 -6.7248 -1.7719 26 6 8.4944 -5.4342 -1.6755 27 6 2.2144 -1.1890 0.0045 28 1 -0.3634 0.0039 1.0277 29 1 -0.3634 0.8880 -0.5172 30 1 -0.3634 -0.8919 -0.5104 31 1 1.6950 2.1387 0.0009 32 1 4.1536 2.0841 -0.0087 33 1 3.8674 -3.1887 0.0773 34 1 5.8970 -4.3116 -0.2109 35 1 8.1048 -2.8730 -1.2277 36 1 8.2504 -2.9457 0.5448 37 1 8.5873 -5.0618 1.6778 38 1 9.4372 -7.3659 1.5178 39 1 11.3419 -12.0083 -1.1777 40 1 9.0884 -7.1891 -2.7406 41 1 8.2292 -4.8893 -2.5694 42 1 1.6940 -2.1354 0.0085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184047904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:51 Heat of formation + Delta-G solvation = 16.894294 kcal Electronic energy + Delta-G solvation = -25340.962195 eV Core-core repulsion = 21480.320061 eV Total energy + Delta-G solvation = -3860.642134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.99193 -39.58238 -39.03042 -36.94585 -35.24126 -34.37973 -33.89433 -32.38617 -30.66212 -30.28044 -29.38532 -28.17134 -25.94983 -24.83769 -23.55482 -22.73348 -22.06763 -20.64395 -20.57088 -18.78088 -18.08912 -17.74335 -17.00348 -16.28670 -16.10711 -15.76444 -15.33886 -14.83131 -14.69113 -14.48365 -14.41040 -14.33119 -13.88971 -13.65913 -13.52986 -13.28757 -13.00823 -12.87034 -12.79963 -12.73557 -12.12878 -12.03593 -11.70982 -11.40521 -10.96445 -10.88637 -10.79405 -10.71518 -10.51284 -10.40033 -9.74457 -9.44788 -9.23931 -8.99261 -8.92051 -8.42006 -8.30043 -7.34997 -6.54304 -4.13354 0.91955 1.07796 1.95125 2.11535 2.55155 3.07806 3.09291 3.11993 3.13723 3.75787 3.89147 3.94402 4.27868 4.43849 4.52765 4.71792 4.82822 4.86801 4.99840 5.13193 5.14600 5.18481 5.22740 5.34004 5.43288 5.55122 5.61679 5.65699 5.80681 5.90972 5.97068 6.10594 6.12594 6.33836 6.47557 6.55514 6.59661 6.71696 6.79143 6.94843 7.13194 7.26087 7.33580 7.67532 7.70882 7.90158 8.08300 8.57674 8.90856 9.58674 10.63025 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.001813 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.434567 B =15444.352602 C =15810.024209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.016 4.016 3 C -0.215 4.215 4 C 0.137 3.863 5 N -0.477 5.477 6 C 0.387 3.613 7 N -0.673 5.673 8 C 0.690 3.310 9 O -0.533 6.533 10 N -0.734 5.734 11 C 0.198 3.802 12 C -0.215 4.215 13 C -0.053 4.053 14 C -0.196 4.196 15 C 0.161 3.839 16 O -0.173 6.173 17 C -0.394 4.394 18 H 0.093 0.907 19 C 0.041 3.959 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.238 4.238 26 C -0.049 4.049 27 C -0.216 4.216 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.132 0.868 32 H 0.157 0.843 33 H 0.413 0.587 34 H 0.397 0.603 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.272 0.728 40 H 0.128 0.872 41 H 0.108 0.892 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.853 18.310 1.527 26.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.024 4.024 3 C -0.237 4.237 4 C -0.021 4.021 5 N -0.192 5.192 6 C 0.155 3.845 7 N -0.321 5.321 8 C 0.389 3.611 9 O -0.404 6.404 10 N -0.391 5.391 11 C 0.076 3.924 12 C -0.216 4.216 13 C -0.072 4.072 14 C -0.215 4.215 15 C 0.106 3.894 16 O -0.075 6.075 17 C -0.470 4.470 18 H 0.110 0.890 19 C -0.164 4.164 20 N -0.493 5.493 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.257 4.257 26 C -0.068 4.068 27 C -0.240 4.240 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.150 0.850 32 H 0.174 0.826 33 H 0.249 0.751 34 H 0.231 0.769 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.082 0.918 40 H 0.146 0.854 41 H 0.126 0.874 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.072 18.788 1.714 25.443 hybrid contribution -1.164 -1.294 -0.866 1.944 sum -18.236 17.493 0.848 25.284 Atomic orbital electron populations 1.20822 0.90147 1.03342 1.02908 1.20044 0.96492 0.92295 0.93577 1.21927 0.95633 0.98520 1.07621 1.22682 0.91384 0.95521 0.92532 1.67718 1.39455 0.96820 1.15229 1.18181 0.87267 0.86119 0.92950 1.42803 1.06550 1.07328 1.75406 1.16109 0.80810 0.85229 0.78947 1.91039 1.67335 1.28314 1.53705 1.45589 1.08295 1.06764 1.78415 1.19858 0.76825 0.94027 1.01712 1.19205 1.12411 0.96270 0.93764 1.20546 0.96410 0.93237 0.97003 1.20217 1.09709 0.95808 0.95781 1.19444 0.91267 0.85311 0.93382 1.83979 1.70369 1.21679 1.31512 1.21309 1.41826 1.02089 0.81791 0.88958 1.25318 0.95899 0.95462 0.99760 1.70025 1.38000 1.11914 1.29378 0.85763 0.79075 0.78403 0.80114 1.19407 1.20200 1.19443 1.21161 1.09367 0.96125 0.99050 1.20653 0.96037 0.94070 0.96059 1.21276 0.92329 0.99564 1.10831 0.90453 0.90927 0.91027 0.84976 0.82552 0.75111 0.76918 0.91588 0.91532 0.86915 0.86370 0.91813 0.85424 0.87362 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 10.06 36.01 0.36 -0.17 16 2 C -0.02 -0.12 5.91 -104.36 -0.62 -0.74 16 3 C -0.22 -1.72 9.81 -39.42 -0.39 -2.11 16 4 C 0.14 1.42 11.17 -17.57 -0.20 1.23 16 5 N -0.48 -6.66 7.89 -12.37 -0.10 -6.75 16 6 C 0.39 4.59 7.42 -154.71 -1.15 3.45 16 7 N -0.67 -7.34 5.39 -15.81 -0.09 -7.43 16 8 C 0.69 9.75 8.52 -86.93 -0.74 9.01 16 9 O -0.53 -9.74 14.61 5.29 0.08 -9.66 16 10 N -0.73 -9.19 5.55 -66.42 -0.37 -9.56 16 11 C 0.20 2.80 5.80 -5.20 -0.03 2.77 16 12 C -0.21 -3.40 5.25 -104.58 -0.55 -3.95 16 13 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 14 C -0.20 -3.90 9.99 -39.39 -0.39 -4.29 16 15 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 16 O -0.17 -4.76 9.76 0.02 0.00 -4.76 16 17 C -0.39 -10.65 9.49 30.89 0.29 -10.36 16 18 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -24.54 13.67 55.48 0.76 -23.78 16 21 Si 0.94 19.93 29.55 -169.99 -5.02 14.91 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 25 C -0.24 -4.87 9.17 -39.40 -0.36 -5.23 16 26 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 27 C -0.22 -1.87 9.64 -39.24 -0.38 -2.25 16 28 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 29 H 0.07 0.26 8.10 -51.93 -0.42 -0.16 16 30 H 0.07 0.28 8.10 -51.93 -0.42 -0.15 16 31 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.16 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.41 2.91 8.72 -40.82 -0.36 2.55 16 34 H 0.40 4.17 8.48 -40.82 -0.35 3.83 16 35 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.07 0.96 8.08 -51.94 -0.42 0.54 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 39 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.13 2.63 5.64 -52.48 -0.30 2.34 16 41 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 42 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -34.38 366.72 -9.53 -43.91 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.05 Total: 8.33 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -5.27 Total: -10.72 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.21 Total: -47.53 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.08 Total: -14.42 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.38 -9.53 -43.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184047904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.800 kcal (2) G-P(sol) polarization free energy of solvation -34.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds