Wall clock time and date at job start Tue Mar 31 2020 14:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38850 * 120.75331 * 2 1 4 4 C 1.38062 * 119.30826 * 180.25253 * 3 2 1 5 5 N 1.31942 * 120.85108 * 359.77774 * 4 3 2 6 6 C 1.32346 * 121.63731 * 359.97438 * 5 4 3 7 7 N 1.39394 * 119.69788 * 180.02562 * 6 5 4 8 8 C 1.34771 * 119.99960 * 354.87168 * 7 6 5 9 9 O 1.21582 * 120.00213 * 5.10839 * 8 7 6 10 10 N 1.34773 * 120.00236 * 185.11371 * 8 7 6 11 11 C 1.46500 * 120.00516 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47360 * 180.02562 * 11 10 8 13 13 C 1.38305 * 119.92721 * 269.72419 * 12 11 10 14 14 C 1.38105 * 120.06783 * 179.72161 * 13 12 11 15 15 C 1.38881 * 119.92739 * 0.57201 * 14 13 12 16 16 O 1.35753 * 120.06456 * 179.68126 * 15 14 13 17 17 C 1.34835 * 116.99546 * 185.55415 * 16 15 14 18 18 H 1.07995 * 120.00239 * 354.93736 * 17 16 15 19 19 C 1.38651 * 119.99541 * 174.94548 * 17 16 15 20 20 N 1.31556 * 120.00252 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99764 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47357 * 59.99704 * 21 19 17 23 23 H 1.48500 * 109.47138 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46793 * 299.99769 * 21 19 17 25 25 C 1.38878 * 119.86251 * 359.69954 * 15 14 13 26 26 C 1.38100 * 119.93448 * 0.02562 * 25 15 14 27 27 C 1.38347 * 120.75047 * 179.78207 * 2 1 3 28 28 H 1.09008 * 109.47194 * 270.21995 * 1 2 3 29 29 H 1.09000 * 109.47271 * 30.21775 * 1 2 3 30 30 H 1.08998 * 109.47739 * 150.21931 * 1 2 3 31 31 H 1.07999 * 120.34174 * 0.05312 * 3 2 1 32 32 H 1.08001 * 119.56591 * 179.79688 * 4 3 2 33 33 H 0.96998 * 119.99761 * 174.86609 * 7 6 5 34 34 H 0.97007 * 119.99863 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.46681 * 299.99696 * 11 10 8 36 36 H 1.08988 * 109.47033 * 59.99404 * 11 10 8 37 37 H 1.07998 * 119.96470 * 359.97438 * 13 12 11 38 38 H 1.07994 * 120.03483 * 180.27290 * 14 13 12 39 39 H 0.97004 * 120.00101 * 180.02562 * 20 19 17 40 40 H 1.08007 * 120.03143 * 179.97438 * 25 15 14 41 41 H 1.07994 * 119.96419 * 179.97438 * 26 25 15 42 42 H 1.08005 * 120.44743 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1932 0.0000 4 6 3.5972 1.1584 -0.0053 5 7 4.2450 0.0090 -0.0060 6 6 3.6043 -1.1490 -0.0011 7 7 4.3294 -2.3395 -0.0014 8 6 5.6723 -2.3105 -0.1111 9 8 6.2590 -1.2456 -0.1161 10 7 6.3650 -3.4619 -0.2152 11 6 7.8249 -3.4304 -0.3338 12 6 8.3511 -4.8389 -0.4354 13 6 8.6955 -5.5312 0.7112 14 6 9.1726 -6.8242 0.6218 15 6 9.3177 -7.4247 -0.6220 16 8 9.7925 -8.6932 -0.7135 17 6 10.0173 -9.1747 -1.9527 18 1 9.7435 -8.5888 -2.8176 19 6 10.6000 -10.4221 -2.1166 20 7 10.9339 -11.1357 -1.0631 21 14 10.9108 -11.0895 -3.8335 22 1 11.8192 -10.1703 -4.5649 23 1 11.5386 -12.4318 -3.7366 24 1 9.6222 -11.1967 -4.5636 25 6 8.9763 -6.7248 -1.7719 26 6 8.4944 -5.4342 -1.6755 27 6 2.2144 -1.1890 0.0045 28 1 -0.3634 0.0039 1.0277 29 1 -0.3634 0.8880 -0.5172 30 1 -0.3634 -0.8919 -0.5104 31 1 1.6950 2.1387 0.0009 32 1 4.1536 2.0841 -0.0087 33 1 3.8674 -3.1887 0.0773 34 1 5.8970 -4.3116 -0.2109 35 1 8.1048 -2.8730 -1.2277 36 1 8.2504 -2.9457 0.5448 37 1 8.5873 -5.0618 1.6778 38 1 9.4372 -7.3659 1.5178 39 1 11.3419 -12.0083 -1.1777 40 1 9.0884 -7.1891 -2.7406 41 1 8.2292 -4.8893 -2.5694 42 1 1.6940 -2.1354 0.0085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184047904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:50 Heat of formation + Delta-G solvation = -5.705019 kcal Electronic energy + Delta-G solvation = -25341.942175 eV Core-core repulsion = 21480.320061 eV Total energy + Delta-G solvation = -3861.622114 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.84815 -40.89286 -40.30784 -38.53889 -36.16624 -35.60570 -34.59473 -34.26169 -31.88435 -31.71910 -30.49149 -28.68089 -27.66977 -26.31142 -24.26897 -23.65512 -23.61799 -22.12985 -21.50378 -19.91086 -19.71481 -18.90926 -18.46860 -16.99355 -16.85914 -16.83286 -16.45619 -16.36101 -16.19771 -15.87607 -15.53073 -15.27325 -15.15240 -15.10501 -14.81909 -14.38621 -14.25698 -13.84380 -13.62640 -13.53904 -13.30605 -13.29362 -13.01826 -12.54256 -12.53119 -12.38222 -12.24880 -12.13884 -11.74099 -11.51115 -11.20806 -10.80674 -10.38272 -10.11187 -10.06721 -9.81430 -9.19196 -9.02395 -8.48294 -6.16642 0.20758 0.41548 0.50418 0.57505 1.35794 1.44116 1.51553 1.56936 2.12511 2.17112 2.76492 2.99491 3.05501 3.23560 3.48966 3.65416 3.86553 3.88642 4.03097 4.10637 4.17310 4.22936 4.30744 4.46017 4.56597 4.72254 4.72892 4.80525 4.82740 4.86498 4.95053 5.03798 5.14099 5.18369 5.26300 5.35899 5.42804 5.49419 5.51355 5.68587 5.75118 5.77964 5.95128 6.01075 6.15491 6.79231 6.96368 7.27006 7.58342 7.75276 8.74119 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.001813 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.434567 B =15444.352602 C =15810.024209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.020 4.020 3 C -0.205 4.205 4 C 0.113 3.887 5 N -0.528 5.528 6 C 0.355 3.645 7 N -0.661 5.661 8 C 0.691 3.309 9 O -0.578 6.578 10 N -0.724 5.724 11 C 0.205 3.795 12 C -0.181 4.181 13 C -0.042 4.042 14 C -0.204 4.204 15 C 0.123 3.877 16 O -0.228 6.228 17 C -0.414 4.414 18 H 0.104 0.896 19 C -0.021 4.021 20 N -0.918 5.918 21 Si 1.017 2.983 22 H -0.259 1.259 23 H -0.273 1.273 24 H -0.256 1.256 25 C -0.244 4.244 26 C -0.044 4.044 27 C -0.209 4.209 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.161 0.839 32 H 0.167 0.833 33 H 0.430 0.570 34 H 0.409 0.591 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.147 0.853 38 H 0.116 0.884 39 H 0.273 0.727 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.769 20.617 0.760 29.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.028 4.028 3 C -0.226 4.226 4 C -0.044 4.044 5 N -0.243 5.243 6 C 0.124 3.876 7 N -0.311 5.311 8 C 0.390 3.610 9 O -0.453 6.453 10 N -0.381 5.381 11 C 0.082 3.918 12 C -0.182 4.182 13 C -0.060 4.060 14 C -0.224 4.224 15 C 0.072 3.928 16 O -0.135 6.135 17 C -0.490 4.490 18 H 0.121 0.879 19 C -0.219 4.219 20 N -0.556 5.556 21 Si 0.836 3.164 22 H -0.183 1.183 23 H -0.197 1.197 24 H -0.180 1.180 25 C -0.263 4.263 26 C -0.063 4.063 27 C -0.232 4.232 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.179 0.821 32 H 0.184 0.816 33 H 0.269 0.731 34 H 0.245 0.755 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.165 0.835 38 H 0.134 0.866 39 H 0.082 0.918 40 H 0.139 0.861 41 H 0.156 0.844 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -20.067 21.134 0.956 29.160 hybrid contribution -0.492 -1.580 -0.492 1.726 sum -20.560 19.555 0.464 28.378 Atomic orbital electron populations 1.20891 0.87528 1.04531 1.03942 1.20522 0.98299 0.91760 0.92247 1.22254 0.94750 1.00121 1.05509 1.22977 0.92801 0.95132 0.93502 1.67575 1.41592 0.98306 1.16859 1.18510 0.88502 0.85798 0.94824 1.42570 1.05419 1.08243 1.74915 1.16208 0.81700 0.84633 0.78457 1.91013 1.68579 1.29903 1.55770 1.45278 1.07579 1.07095 1.78179 1.19720 0.77772 0.92190 1.02141 1.19447 1.09189 0.96580 0.93010 1.20880 0.94540 0.91674 0.98932 1.20446 1.09974 0.97124 0.94813 1.19994 0.92443 0.84920 0.95404 1.83950 1.73472 1.24137 1.31897 1.21792 1.42150 1.02743 0.82355 0.87900 1.26576 0.95474 0.95533 1.04343 1.70172 1.40654 1.12677 1.32070 0.84664 0.79486 0.77678 0.74523 1.18305 1.19741 1.18035 1.21245 1.09671 0.97360 0.98035 1.20935 0.94755 0.92716 0.97844 1.21584 0.91048 1.01320 1.09247 0.89313 0.89688 0.89989 0.82129 0.81636 0.73067 0.75497 0.91453 0.91128 0.83519 0.86626 0.91803 0.86135 0.84389 0.82074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.06 71.24 0.72 0.13 16 2 C -0.02 -0.25 5.91 -19.69 -0.12 -0.36 16 3 C -0.21 -2.80 9.81 22.37 0.22 -2.58 16 4 C 0.11 2.26 11.17 84.63 0.95 3.21 16 5 N -0.53 -14.54 7.89 -193.05 -1.52 -16.06 16 6 C 0.36 7.96 7.42 132.92 0.99 8.95 16 7 N -0.66 -13.30 5.39 -322.21 -1.74 -15.04 16 8 C 0.69 18.43 8.52 179.06 1.53 19.95 16 9 O -0.58 -20.78 14.61 -3.97 -0.06 -20.84 16 10 N -0.72 -16.18 5.55 -482.33 -2.68 -18.86 16 11 C 0.21 5.16 5.80 85.63 0.50 5.66 16 12 C -0.18 -5.20 5.25 -19.83 -0.10 -5.31 16 13 C -0.04 -1.29 9.69 22.25 0.22 -1.07 16 14 C -0.20 -8.15 9.99 22.39 0.22 -7.93 16 15 C 0.12 5.84 6.65 22.58 0.15 5.99 16 16 O -0.23 -13.32 9.76 -22.83 -0.22 -13.54 16 17 C -0.41 -23.44 9.49 67.92 0.64 -22.80 16 18 H 0.10 5.30 5.20 -2.91 -0.02 5.28 16 19 C -0.02 -1.18 5.49 84.83 0.47 -0.72 16 20 N -0.92 -55.29 13.67 21.61 0.30 -54.99 16 21 Si 1.02 41.84 29.55 68.60 2.03 43.87 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 25 C -0.24 -9.98 9.17 22.39 0.21 -9.77 16 26 C -0.04 -1.40 9.69 22.25 0.22 -1.19 16 27 C -0.21 -3.07 9.64 22.49 0.22 -2.86 16 28 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 29 H 0.08 0.27 8.10 -2.39 -0.02 0.25 16 30 H 0.08 0.29 8.10 -2.39 -0.02 0.27 16 31 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 32 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 33 H 0.43 5.01 8.72 -92.71 -0.81 4.20 16 34 H 0.41 7.29 8.48 -92.70 -0.79 6.51 16 35 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 36 H 0.07 1.81 8.08 -2.39 -0.02 1.79 16 37 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 38 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 39 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 40 H 0.12 5.05 5.64 -2.91 -0.02 5.03 16 41 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 42 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -80.80 366.72 2.60 -78.20 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: -0.51 Total: 27.96 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 7.01 Total: -10.70 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -5.64 Total: -104.95 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.28 Total: -34.38 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -80.80 2.60 -78.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184047904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.494 kcal (2) G-P(sol) polarization free energy of solvation -80.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds