Wall clock time and date at job start Tue Mar 31 2020 14:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30471 * 125.96871 * 2 1 4 4 N 1.39943 * 108.91558 * 180.02562 * 3 2 1 5 5 C 1.40150 * 125.77152 * 180.02562 * 4 3 2 6 6 C 1.38841 * 120.06815 * 179.69896 * 5 4 3 7 7 C 1.38113 * 119.93315 * 179.74788 * 6 5 4 8 8 C 1.38281 * 120.06839 * 0.55479 * 7 6 5 9 9 C 1.38278 * 120.13151 * 359.69828 * 8 7 6 10 10 C 1.38109 * 120.07060 * 0.02562 * 9 8 7 11 11 C 1.34535 * 108.45416 * 359.73059 * 4 3 2 12 12 C 1.38065 * 107.38167 * 0.42807 * 11 4 3 13 13 C 1.47416 * 126.41058 * 179.84235 * 12 11 4 14 14 O 1.21609 * 119.99650 * 179.69090 * 13 12 11 15 15 N 1.34774 * 119.99921 * 359.68332 * 13 12 11 16 16 C 1.47586 * 134.48934 * 180.02562 * 15 13 12 17 17 C 1.53949 * 86.11504 * 155.36070 * 16 15 13 18 18 O 1.42903 * 113.74102 * 269.15490 * 17 16 15 19 19 C 1.50694 * 113.74088 * 137.95266 * 17 16 15 20 20 H 1.08000 * 120.00563 * 1.92388 * 19 17 16 21 21 C 1.37885 * 119.99902 * 181.92552 * 19 17 16 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 17 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 C 1.47807 * 134.45633 * 359.87327 * 15 13 12 28 28 H 1.09001 * 109.47095 * 269.97766 * 1 2 3 29 29 H 1.09005 * 109.46923 * 29.97018 * 1 2 3 30 30 H 1.08995 * 109.47583 * 149.97511 * 1 2 3 31 31 H 1.08009 * 120.03140 * 0.02562 * 6 5 4 32 32 H 1.08005 * 119.96643 * 180.27080 * 7 6 5 33 33 H 1.07997 * 119.93427 * 179.71669 * 8 7 6 34 34 H 1.08007 * 119.96361 * 180.02562 * 9 8 7 35 35 H 1.08002 * 120.03533 * 180.02562 * 10 9 8 36 36 H 1.08003 * 126.31157 * 180.27058 * 11 4 3 37 37 H 1.08993 * 113.76952 * 41.05857 * 16 15 13 38 38 H 1.08993 * 113.76905 * 269.65828 * 16 15 13 39 39 H 0.96700 * 113.99800 * 178.07503 * 18 17 16 40 40 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 41 41 H 1.08995 * 113.77163 * 90.38050 * 27 15 13 42 42 H 1.09005 * 113.83876 * 318.91036 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2733 1.0560 0.0000 4 7 3.6112 0.6456 -0.0006 5 6 4.7279 1.4924 -0.0003 6 6 6.0082 0.9554 0.0054 7 6 7.1067 1.7925 0.0004 8 6 6.9324 3.1643 0.0014 9 6 5.6586 3.7021 0.0011 10 6 4.5561 2.8703 0.0003 11 6 3.6441 -0.6994 0.0050 12 6 2.3370 -1.1440 -0.0006 13 6 1.8906 -2.5489 -0.0008 14 8 0.7027 -2.8094 -0.0005 15 7 2.7989 -3.5446 -0.0014 16 6 2.7182 -5.0182 -0.0022 17 6 4.1178 -4.9901 -0.6426 18 8 4.0965 -4.9684 -2.0713 19 6 5.0612 -6.0244 -0.0848 20 1 4.7186 -6.7165 0.6703 21 6 6.3617 -6.0874 -0.5385 22 7 6.7788 -5.2450 -1.4584 23 14 7.5312 -7.3691 0.1535 24 1 8.8598 -7.2283 -0.4949 25 1 7.6715 -7.1715 1.6186 26 1 6.9920 -8.7267 -0.1135 27 6 4.2760 -3.5983 -0.0044 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8903 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 6.1450 -0.1160 0.0091 32 1 8.1029 1.3753 0.0004 33 1 7.7930 3.8168 0.0022 34 1 5.5256 4.7740 0.0015 35 1 3.5614 3.2910 -0.0004 36 1 4.5298 -1.3175 0.0102 37 1 1.9431 -5.4154 -0.6575 38 1 2.7002 -5.4577 0.9951 39 1 4.9729 -4.9211 -2.4771 40 1 7.6938 -5.2891 -1.7772 41 1 4.7169 -3.6196 0.9922 42 1 4.7422 -2.8641 -0.6616 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186830442.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:40 Heat of formation + Delta-G solvation = 44.562429 kcal Electronic energy + Delta-G solvation = -27347.140742 eV Core-core repulsion = 23487.698389 eV Total energy + Delta-G solvation = -3859.442354 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.93639 -41.00829 -39.99920 -38.82082 -35.83617 -35.16753 -34.13468 -32.61696 -31.92989 -31.28199 -29.99820 -28.54475 -27.16853 -27.05228 -24.86842 -23.68561 -22.59539 -21.69533 -21.01737 -20.21151 -19.38478 -18.85042 -17.75800 -17.31691 -17.04820 -16.93149 -16.52561 -16.24746 -16.02691 -15.81027 -15.54891 -15.00822 -14.85943 -14.50544 -14.48015 -14.31677 -14.08663 -13.93495 -13.72040 -13.43659 -13.39559 -13.13341 -12.80707 -12.73678 -12.62665 -12.36025 -12.23814 -12.19732 -11.93494 -11.39405 -11.20671 -10.92285 -10.61940 -10.37771 -10.24640 -10.07549 -9.59572 -9.16173 -8.24900 -6.41529 -0.41816 0.28337 0.70751 1.04229 1.06247 1.49456 1.52534 1.58710 1.95174 2.31655 2.43027 2.73478 2.97786 3.07719 3.38469 3.59718 3.75045 3.84728 3.87759 3.99179 4.14519 4.17142 4.28931 4.37707 4.40803 4.49908 4.56242 4.61543 4.70059 4.75042 4.79656 4.84718 4.86990 4.97888 5.03513 5.18512 5.24592 5.33370 5.43256 5.48367 5.64994 5.74308 5.94517 5.99442 6.32437 6.63852 6.81693 7.17419 7.32114 7.45840 8.80928 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010429 B = 0.004151 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.224892 B = 6744.529909 C = 9094.156190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.129 3.871 3 N -0.308 5.308 4 N -0.308 5.308 5 C 0.118 3.882 6 C -0.149 4.149 7 C -0.092 4.092 8 C -0.117 4.117 9 C -0.095 4.095 10 C -0.129 4.129 11 C 0.105 3.895 12 C -0.292 4.292 13 C 0.603 3.397 14 O -0.586 6.586 15 N -0.632 5.632 16 C 0.115 3.885 17 C 0.223 3.777 18 O -0.586 6.586 19 C -0.557 4.557 20 H 0.072 0.928 21 C 0.038 3.962 22 N -0.914 5.914 23 Si 0.964 3.036 24 H -0.282 1.282 25 H -0.268 1.268 26 H -0.277 1.277 27 C 0.086 3.914 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.131 0.869 36 H 0.201 0.799 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.387 0.613 40 H 0.276 0.724 41 H 0.096 0.904 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.357 16.314 4.002 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.039 4.039 3 N -0.128 5.128 4 N -0.079 5.079 5 C 0.027 3.973 6 C -0.169 4.169 7 C -0.110 4.110 8 C -0.136 4.136 9 C -0.113 4.113 10 C -0.148 4.148 11 C -0.044 4.044 12 C -0.306 4.306 13 C 0.394 3.606 14 O -0.469 6.469 15 N -0.365 5.365 16 C -0.007 4.007 17 C 0.182 3.818 18 O -0.397 6.397 19 C -0.595 4.595 20 H 0.090 0.910 21 C -0.163 4.163 22 N -0.554 5.554 23 Si 0.790 3.210 24 H -0.208 1.208 25 H -0.193 1.193 26 H -0.203 1.203 27 C -0.036 4.036 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.149 0.851 32 H 0.176 0.824 33 H 0.181 0.819 34 H 0.179 0.821 35 H 0.149 0.851 36 H 0.218 0.782 37 H 0.080 0.920 38 H 0.122 0.878 39 H 0.241 0.759 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.218 17.682 3.977 18.259 hybrid contribution 1.028 -1.838 0.026 2.106 sum 3.246 15.844 4.003 16.661 Atomic orbital electron populations 1.20377 0.83716 1.04333 1.04426 1.22975 0.98543 0.88163 0.94234 1.77096 0.85567 1.22520 1.27663 1.45743 1.05110 1.04099 1.52984 1.18046 0.83545 0.90465 1.05219 1.21148 0.90323 1.01641 1.03801 1.21387 0.98703 0.93740 0.97209 1.21715 0.98326 0.95257 0.98256 1.21445 0.91284 1.01145 0.97419 1.21056 1.01404 0.90331 1.02030 1.23764 0.99770 0.84824 0.95996 1.20309 0.92957 0.94032 1.23266 1.17107 0.84373 0.83446 0.75630 1.90643 1.16849 1.84615 1.54825 1.50019 1.08502 1.06829 1.71135 1.23465 0.98061 0.78466 1.00677 1.20065 0.91014 0.91316 0.79431 1.86072 1.36502 1.96729 1.20426 1.21689 0.95939 1.18045 1.23854 0.90974 1.25668 0.99180 0.96975 0.94443 1.69450 1.18982 1.37329 1.29633 0.85506 0.77513 0.79151 0.78851 1.20777 1.19256 1.20277 1.24301 0.77633 1.00414 1.01273 0.88897 0.88820 0.90010 0.85100 0.82351 0.81869 0.82095 0.85098 0.78208 0.92038 0.87762 0.75861 0.91427 0.88597 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.99 9.92 71.24 0.71 -1.29 16 2 C 0.13 4.45 7.26 43.52 0.32 4.77 16 3 N -0.31 -10.32 11.77 -46.64 -0.55 -10.87 16 4 N -0.31 -9.86 3.77 -186.21 -0.70 -10.56 16 5 C 0.12 3.14 6.68 38.10 0.25 3.40 16 6 C -0.15 -3.36 9.45 22.38 0.21 -3.15 16 7 C -0.09 -1.50 10.04 22.25 0.22 -1.28 16 8 C -0.12 -1.55 10.04 22.29 0.22 -1.32 16 9 C -0.09 -1.44 10.04 22.25 0.22 -1.21 16 10 C -0.13 -2.87 9.65 22.39 0.22 -2.65 16 11 C 0.10 3.53 9.89 84.24 0.83 4.36 16 12 C -0.29 -11.08 6.13 -20.14 -0.12 -11.20 16 13 C 0.60 25.99 8.05 86.66 0.70 26.69 16 14 O -0.59 -27.47 15.64 -4.06 -0.06 -27.53 16 15 N -0.63 -26.90 3.61 -843.53 -3.05 -29.95 16 16 C 0.12 4.98 8.23 86.49 0.71 5.69 16 17 C 0.22 10.37 1.40 -10.88 -0.02 10.35 16 18 O -0.59 -29.83 13.48 -148.98 -2.01 -31.84 16 19 C -0.56 -26.77 8.61 25.60 0.22 -26.55 16 20 H 0.07 3.37 7.81 -2.91 -0.02 3.35 16 21 C 0.04 1.81 5.40 84.66 0.46 2.26 16 22 N -0.91 -43.75 11.20 21.45 0.24 -43.51 16 23 Si 0.96 37.83 29.54 68.60 2.03 39.85 16 24 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 26 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 27 C 0.09 3.52 6.55 86.44 0.57 4.09 16 28 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 30 H 0.08 2.63 6.55 -2.39 -0.02 2.61 16 31 H 0.13 2.94 6.71 -2.91 -0.02 2.92 16 32 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 33 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 34 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.13 3.02 7.68 -2.91 -0.02 3.00 16 36 H 0.20 6.19 4.06 -2.91 -0.01 6.18 16 37 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.10 4.06 8.09 -2.39 -0.02 4.04 16 39 H 0.39 19.80 6.60 -74.06 -0.49 19.31 16 40 H 0.28 12.56 8.31 -92.71 -0.77 11.79 16 41 H 0.10 3.65 8.09 -2.39 -0.02 3.63 16 42 H 0.07 2.78 6.28 -2.38 -0.01 2.77 16 Total: -1.00 -62.60 356.45 2.20 -60.39 By element: Atomic # 1 Polarization: 40.46 SS G_CDS: 0.59 Total: 41.05 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 5.72 Total: 12.96 kcal Atomic # 7 Polarization: -90.83 SS G_CDS: -4.06 Total: -94.89 kcal Atomic # 8 Polarization: -57.29 SS G_CDS: -2.07 Total: -59.37 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.85 kcal Total: -62.60 2.20 -60.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186830442.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.953 kcal (2) G-P(sol) polarization free energy of solvation -62.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds