Wall clock time and date at job start Tue Mar 31 2020 14:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35356 * 126.43786 * 2 1 4 4 C 1.41534 * 105.55546 * 179.97438 * 3 2 1 5 5 C 1.47669 * 126.44177 * 179.97438 * 4 3 2 6 6 O 1.21578 * 119.99992 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00221 * 179.97438 * 5 4 3 8 8 C 1.47069 * 136.05440 * 359.63494 * 7 5 4 9 9 C 1.53233 * 88.08233 * 207.20014 * 8 7 5 10 10 O 1.42897 * 114.19864 * 87.72669 * 9 8 7 11 11 C 1.50707 * 114.32590 * 220.47159 * 9 8 7 12 12 H 1.07995 * 119.99549 * 93.75813 * 11 9 8 13 13 C 1.37871 * 119.99767 * 273.75878 * 11 9 8 14 14 N 1.31512 * 120.00486 * 359.97438 * 13 11 9 15 15 Si 1.86804 * 119.99779 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46855 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47241 * 120.00018 * 15 13 11 18 18 H 1.48500 * 109.46966 * 240.00119 * 15 13 11 19 19 C 1.47062 * 136.05880 * 179.97438 * 7 5 4 20 20 N 1.31854 * 107.11309 * 359.77779 * 4 3 2 21 21 N 1.28472 * 110.12330 * 0.37318 * 20 4 3 22 22 C 1.40111 * 124.95992 * 179.88816 * 21 20 4 23 23 C 1.38868 * 120.06611 * 324.69176 * 22 21 20 24 24 C 1.38115 * 119.92822 * 180.02562 * 23 22 21 25 25 C 1.38278 * 120.07350 * 0.02562 * 24 23 22 26 26 C 1.38288 * 120.13490 * 0.02562 * 25 24 23 27 27 C 1.38117 * 120.06955 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.47242 * 270.02753 * 1 2 3 29 29 H 1.08999 * 109.47062 * 30.02629 * 1 2 3 30 30 H 1.09001 * 109.47416 * 150.02545 * 1 2 3 31 31 H 1.07999 * 127.22303 * 359.95449 * 3 2 1 32 32 H 1.08997 * 113.46767 * 321.93809 * 8 7 5 33 33 H 1.09008 * 113.46768 * 92.37219 * 8 7 5 34 34 H 0.96703 * 113.99614 * 86.30097 * 10 9 8 35 35 H 0.96997 * 120.00700 * 180.02562 * 14 13 11 36 36 H 1.08998 * 113.47090 * 267.62824 * 19 7 5 37 37 H 1.08997 * 113.46462 * 38.01623 * 19 7 5 38 38 H 1.07998 * 120.03346 * 0.27318 * 23 22 21 39 39 H 1.08000 * 119.96136 * 179.97438 * 24 23 22 40 40 H 1.07998 * 119.93551 * 179.97438 * 25 24 23 41 41 H 1.08003 * 119.96375 * 179.97438 * 26 25 24 42 42 H 1.08004 * 120.03478 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3109 1.0889 0.0000 4 6 3.6333 0.5844 0.0006 5 6 4.8763 1.3817 0.0003 6 8 4.8195 2.5961 -0.0001 7 7 6.0737 0.7631 0.0015 8 6 6.5460 -0.6297 0.0097 9 6 7.8212 -0.1390 0.7033 10 8 7.7297 -0.0864 2.1283 11 6 9.0865 -0.7934 0.2113 12 1 9.6668 -0.3267 -0.5709 13 6 9.5032 -1.9877 0.7599 14 7 8.7968 -2.5556 1.7128 15 14 11.0720 -2.7984 0.1506 16 1 11.6775 -1.9639 -0.9181 17 1 12.0299 -2.9322 1.2774 18 1 10.7552 -4.1438 -0.3922 19 6 7.4829 1.1837 0.0012 20 7 3.5466 -0.7312 0.0058 21 7 2.3139 -1.0930 0.0006 22 6 1.8669 -2.4209 0.0017 23 6 2.5778 -3.3948 -0.6871 24 6 2.1343 -4.7028 -0.6846 25 6 0.9834 -5.0430 0.0023 26 6 0.2726 -4.0751 0.6882 27 6 0.7110 -2.7654 0.6896 28 1 -0.3634 0.0005 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 2.0071 2.1253 -0.0007 32 1 5.9414 -1.2894 0.6320 33 1 6.7221 -1.0342 -0.9871 34 1 7.9434 -0.9212 2.5672 35 1 9.0901 -3.3956 2.0990 36 1 7.9109 1.2668 -0.9977 37 1 7.6733 2.0635 0.6158 38 1 3.4787 -3.1305 -1.2208 39 1 2.6866 -5.4607 -1.2204 40 1 0.6384 -6.0663 0.0024 41 1 -0.6261 -4.3438 1.2235 42 1 0.1556 -2.0100 1.2258 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186832366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:45 Heat of formation + Delta-G solvation = 71.380821 kcal Electronic energy + Delta-G solvation = -27396.255409 eV Core-core repulsion = 23537.975988 eV Total energy + Delta-G solvation = -3858.279421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.81525 -39.50700 -39.11198 -37.20402 -33.96443 -33.67314 -32.98738 -32.13251 -31.13415 -29.69522 -28.52313 -27.12143 -25.62603 -24.97757 -23.74416 -23.22018 -21.77832 -20.63092 -19.76891 -18.10428 -17.83565 -17.32970 -16.61063 -16.26740 -16.03382 -15.40259 -15.02758 -14.98745 -14.63680 -14.40686 -14.07799 -13.91085 -13.58654 -13.34858 -13.24303 -13.12026 -12.83323 -12.61732 -12.55373 -12.17901 -11.89571 -11.79438 -11.50269 -11.41840 -11.05917 -10.96916 -10.59673 -10.41046 -10.16092 -9.98314 -9.74810 -9.30481 -9.21337 -8.89769 -8.73159 -8.46457 -8.29913 -7.75849 -6.35055 -4.45237 0.66651 1.03123 1.98782 2.22584 2.39993 3.15925 3.25095 3.29157 3.42544 3.59884 3.92356 4.21701 4.39328 4.49997 4.60093 4.73791 4.80985 4.85461 4.90771 5.04793 5.17345 5.25369 5.30540 5.45664 5.61630 5.64906 5.67230 5.71027 5.93463 5.99693 6.03723 6.07356 6.17348 6.23949 6.42580 6.48779 6.51973 6.64848 6.76899 6.90216 7.03618 7.18868 7.67994 7.86696 8.02179 8.51466 8.58659 8.83450 9.25761 9.56256 10.71685 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011495 B = 0.004001 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.242888 B = 6996.565578 C = 8983.522630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.005 3.995 3 C -0.174 4.174 4 C 0.012 3.988 5 C 0.619 3.381 6 O -0.557 6.557 7 N -0.619 5.619 8 C 0.083 3.917 9 C 0.237 3.763 10 O -0.571 6.571 11 C -0.532 4.532 12 H 0.073 0.927 13 C 0.072 3.928 14 N -0.897 5.897 15 Si 0.908 3.092 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.109 3.891 20 N -0.242 5.242 21 N -0.242 5.242 22 C 0.137 3.863 23 C -0.099 4.099 24 C -0.101 4.101 25 C -0.118 4.118 26 C -0.104 4.104 27 C -0.124 4.124 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.165 0.835 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.393 0.607 35 H 0.273 0.727 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.318 -5.578 -3.878 19.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.150 4.150 5 C 0.406 3.594 6 O -0.435 6.435 7 N -0.351 5.351 8 C -0.040 4.040 9 C 0.195 3.805 10 O -0.384 6.384 11 C -0.570 4.570 12 H 0.091 0.909 13 C -0.130 4.130 14 N -0.538 5.538 15 Si 0.735 3.265 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.013 4.013 20 N -0.074 5.074 21 N -0.026 5.026 22 C 0.047 3.953 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.136 4.136 26 C -0.123 4.123 27 C -0.144 4.144 28 H 0.097 0.903 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.182 0.818 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.250 0.750 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.156 0.844 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.068 -5.407 -3.869 19.253 hybrid contribution 0.454 -0.458 -0.165 0.665 sum -17.613 -5.865 -4.034 18.998 Atomic orbital electron populations 1.20472 0.86751 1.03947 1.03054 1.21555 0.95313 0.86130 1.08566 1.21522 0.90500 0.99403 1.08736 1.22103 0.95196 0.89429 1.08272 1.16274 0.80310 0.85564 0.77203 1.90726 1.86320 1.12761 1.53733 1.49527 1.04467 1.12249 1.68832 1.24120 0.96566 0.82305 1.01000 1.19537 0.91094 0.89513 0.80353 1.86040 1.92224 1.41866 1.18312 1.21466 1.08119 1.06196 1.21198 0.90869 1.25071 0.97305 0.96382 0.94275 1.69285 1.38889 1.19256 1.26341 0.86279 0.82285 0.79050 0.78897 1.19394 1.20635 1.20721 1.23382 0.77353 1.00405 1.00201 1.73881 1.00106 1.15062 1.18329 1.42789 1.03393 1.04506 1.51865 1.17585 0.96414 0.80757 1.00569 1.21153 1.00088 0.92428 0.98203 1.21128 0.96357 0.95469 0.98971 1.21306 0.95281 0.99804 0.97201 1.21002 1.00199 0.91781 0.99280 1.21112 0.96183 0.97775 0.99328 0.90327 0.89563 0.90877 0.81762 0.90962 0.90441 0.75021 0.91707 0.89491 0.91344 0.84383 0.84763 0.85272 0.84915 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 8.57 36.00 0.31 -0.42 16 2 C 0.00 0.07 6.75 -81.84 -0.55 -0.48 16 3 C -0.17 -2.86 10.72 -39.35 -0.42 -3.28 16 4 C 0.01 0.24 7.10 -82.75 -0.59 -0.35 16 5 C 0.62 14.26 8.07 -12.41 -0.10 14.16 16 6 O -0.56 -13.73 17.70 5.30 0.09 -13.64 16 7 N -0.62 -14.42 3.69 -186.56 -0.69 -15.11 16 8 C 0.08 1.95 7.19 -8.64 -0.06 1.89 16 9 C 0.24 5.96 1.57 -91.38 -0.14 5.82 16 10 O -0.57 -15.50 13.54 -35.23 -0.48 -15.97 16 11 C -0.53 -13.65 8.69 -34.44 -0.30 -13.95 16 12 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 13 C 0.07 1.83 5.39 -17.82 -0.10 1.73 16 14 N -0.90 -23.34 11.01 55.43 0.61 -22.73 16 15 Si 0.91 19.69 29.54 -169.99 -5.02 14.67 16 16 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 C 0.11 2.50 8.04 -8.50 -0.07 2.43 16 20 N -0.24 -4.69 10.14 33.42 0.34 -4.35 16 21 N -0.24 -3.86 3.47 -6.85 -0.02 -3.88 16 22 C 0.14 1.83 6.20 -83.61 -0.52 1.31 16 23 C -0.10 -1.27 9.69 -39.39 -0.38 -1.65 16 24 C -0.10 -0.99 10.04 -39.61 -0.40 -1.39 16 25 C -0.12 -0.96 10.04 -39.55 -0.40 -1.36 16 26 C -0.10 -0.85 10.04 -39.61 -0.40 -1.24 16 27 C -0.12 -1.26 8.21 -39.40 -0.32 -1.59 16 28 H 0.08 0.55 7.69 -51.93 -0.40 0.15 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.56 6.83 -51.93 -0.35 0.20 16 31 H 0.16 2.38 8.06 -52.49 -0.42 1.96 16 32 H 0.07 1.78 7.50 -51.93 -0.39 1.39 16 33 H 0.08 1.74 8.10 -51.92 -0.42 1.32 16 34 H 0.39 10.75 6.32 45.56 0.29 11.04 16 35 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 36 H 0.09 1.81 8.10 -51.93 -0.42 1.39 16 37 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.14 1.92 8.00 -52.49 -0.42 1.50 16 39 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.13 1.15 5.99 -52.48 -0.31 0.84 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -31.90 359.89 -8.70 -40.59 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -4.51 Total: 13.36 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -4.44 Total: 1.64 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.24 Total: -46.08 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.38 Total: -29.61 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.90 -8.70 -40.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186832366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.975 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds