Wall clock time and date at job start Tue Mar 31 2020 14:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35356 * 126.43786 * 2 1 4 4 C 1.41534 * 105.55546 * 179.97438 * 3 2 1 5 5 C 1.47669 * 126.44177 * 179.97438 * 4 3 2 6 6 O 1.21578 * 119.99992 * 0.02562 * 5 4 3 7 7 N 1.34775 * 120.00221 * 179.97438 * 5 4 3 8 8 C 1.47069 * 136.05440 * 359.63494 * 7 5 4 9 9 C 1.53233 * 88.08233 * 207.20014 * 8 7 5 10 10 O 1.42897 * 114.19864 * 87.72669 * 9 8 7 11 11 C 1.50707 * 114.32590 * 220.47159 * 9 8 7 12 12 H 1.07995 * 119.99549 * 93.75813 * 11 9 8 13 13 C 1.37871 * 119.99767 * 273.75878 * 11 9 8 14 14 N 1.31512 * 120.00486 * 359.97438 * 13 11 9 15 15 Si 1.86804 * 119.99779 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.46855 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47241 * 120.00018 * 15 13 11 18 18 H 1.48500 * 109.46966 * 240.00119 * 15 13 11 19 19 C 1.47062 * 136.05880 * 179.97438 * 7 5 4 20 20 N 1.31854 * 107.11309 * 359.77779 * 4 3 2 21 21 N 1.28472 * 110.12330 * 0.37318 * 20 4 3 22 22 C 1.40111 * 124.95992 * 179.88816 * 21 20 4 23 23 C 1.38868 * 120.06611 * 324.69176 * 22 21 20 24 24 C 1.38115 * 119.92822 * 180.02562 * 23 22 21 25 25 C 1.38278 * 120.07350 * 0.02562 * 24 23 22 26 26 C 1.38288 * 120.13490 * 0.02562 * 25 24 23 27 27 C 1.38117 * 120.06955 * 359.97438 * 26 25 24 28 28 H 1.09003 * 109.47242 * 270.02753 * 1 2 3 29 29 H 1.08999 * 109.47062 * 30.02629 * 1 2 3 30 30 H 1.09001 * 109.47416 * 150.02545 * 1 2 3 31 31 H 1.07999 * 127.22303 * 359.95449 * 3 2 1 32 32 H 1.08997 * 113.46767 * 321.93809 * 8 7 5 33 33 H 1.09008 * 113.46768 * 92.37219 * 8 7 5 34 34 H 0.96703 * 113.99614 * 86.30097 * 10 9 8 35 35 H 0.96997 * 120.00700 * 180.02562 * 14 13 11 36 36 H 1.08998 * 113.47090 * 267.62824 * 19 7 5 37 37 H 1.08997 * 113.46462 * 38.01623 * 19 7 5 38 38 H 1.07998 * 120.03346 * 0.27318 * 23 22 21 39 39 H 1.08000 * 119.96136 * 179.97438 * 24 23 22 40 40 H 1.07998 * 119.93551 * 179.97438 * 25 24 23 41 41 H 1.08003 * 119.96375 * 179.97438 * 26 25 24 42 42 H 1.08004 * 120.03478 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3109 1.0889 0.0000 4 6 3.6333 0.5844 0.0006 5 6 4.8763 1.3817 0.0003 6 8 4.8195 2.5961 -0.0001 7 7 6.0737 0.7631 0.0015 8 6 6.5460 -0.6297 0.0097 9 6 7.8212 -0.1390 0.7033 10 8 7.7297 -0.0864 2.1283 11 6 9.0865 -0.7934 0.2113 12 1 9.6668 -0.3267 -0.5709 13 6 9.5032 -1.9877 0.7599 14 7 8.7968 -2.5556 1.7128 15 14 11.0720 -2.7984 0.1506 16 1 11.6775 -1.9639 -0.9181 17 1 12.0299 -2.9322 1.2774 18 1 10.7552 -4.1438 -0.3922 19 6 7.4829 1.1837 0.0012 20 7 3.5466 -0.7312 0.0058 21 7 2.3139 -1.0930 0.0006 22 6 1.8669 -2.4209 0.0017 23 6 2.5778 -3.3948 -0.6871 24 6 2.1343 -4.7028 -0.6846 25 6 0.9834 -5.0430 0.0023 26 6 0.2726 -4.0751 0.6882 27 6 0.7110 -2.7654 0.6896 28 1 -0.3634 0.0005 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 2.0071 2.1253 -0.0007 32 1 5.9414 -1.2894 0.6320 33 1 6.7221 -1.0342 -0.9871 34 1 7.9434 -0.9212 2.5672 35 1 9.0901 -3.3956 2.0990 36 1 7.9109 1.2668 -0.9977 37 1 7.6733 2.0635 0.6158 38 1 3.4787 -3.1305 -1.2208 39 1 2.6866 -5.4607 -1.2204 40 1 0.6384 -6.0663 0.0024 41 1 -0.6261 -4.3438 1.2235 42 1 0.1556 -2.0100 1.2258 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186832366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:45 Heat of formation + Delta-G solvation = 50.105823 kcal Electronic energy + Delta-G solvation = -27397.177962 eV Core-core repulsion = 23537.975988 eV Total energy + Delta-G solvation = -3859.201974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.04258 -41.26322 -40.06670 -39.05623 -35.95914 -34.77514 -34.15897 -33.99265 -31.93391 -31.08128 -30.00300 -28.16365 -27.43250 -26.88038 -25.08545 -24.06744 -22.95333 -21.87379 -21.40279 -19.87763 -19.23128 -18.89060 -17.77812 -17.46201 -17.41324 -17.20298 -16.77867 -16.33706 -15.98358 -15.83664 -15.41494 -15.07189 -14.76038 -14.57024 -14.49166 -14.36495 -14.03501 -13.94715 -13.84922 -13.64069 -13.44866 -13.25688 -12.83726 -12.80734 -12.52087 -12.25836 -12.24307 -12.17069 -11.83533 -11.59750 -11.13180 -11.06241 -10.70349 -10.29353 -10.09522 -10.04915 -9.73203 -9.42303 -8.29467 -6.47636 -0.26450 0.27284 0.58841 1.07793 1.29614 1.44627 1.48127 1.59932 1.88973 2.24065 2.39301 2.64649 2.91451 3.18944 3.54703 3.60252 3.72578 3.83844 3.91375 4.09591 4.16572 4.24301 4.36235 4.40057 4.44421 4.46459 4.54918 4.58994 4.67498 4.73046 4.85693 4.91581 4.93554 4.95136 5.00999 5.17439 5.18127 5.29095 5.33800 5.44573 5.69980 5.71549 5.86725 6.01217 6.58714 6.67206 6.69990 7.06025 7.26291 7.43706 8.77675 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011495 B = 0.004001 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.242888 B = 6996.565578 C = 8983.522630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.025 3.975 3 C -0.192 4.192 4 C -0.028 4.028 5 C 0.613 3.387 6 O -0.582 6.582 7 N -0.625 5.625 8 C 0.102 3.898 9 C 0.220 3.780 10 O -0.586 6.586 11 C -0.552 4.552 12 H 0.079 0.921 13 C 0.030 3.970 14 N -0.920 5.920 15 Si 0.975 3.025 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.276 1.276 19 C 0.110 3.890 20 N -0.274 5.274 21 N -0.237 5.237 22 C 0.095 3.905 23 C -0.125 4.125 24 C -0.106 4.106 25 C -0.105 4.105 26 C -0.095 4.095 27 C -0.120 4.120 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.178 0.822 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.389 0.611 35 H 0.277 0.723 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.109 0.891 39 H 0.150 0.850 40 H 0.165 0.835 41 H 0.173 0.827 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.899 -7.715 -4.056 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 C -0.220 4.220 4 C -0.188 4.188 5 C 0.403 3.597 6 O -0.462 6.462 7 N -0.357 5.357 8 C -0.021 4.021 9 C 0.179 3.821 10 O -0.399 6.399 11 C -0.590 4.590 12 H 0.097 0.903 13 C -0.170 4.170 14 N -0.561 5.561 15 Si 0.800 3.200 16 H -0.188 1.188 17 H -0.205 1.205 18 H -0.202 1.202 19 C -0.012 4.012 20 N -0.108 5.108 21 N -0.020 5.020 22 C 0.006 3.994 23 C -0.145 4.145 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.113 4.113 27 C -0.140 4.140 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.195 0.805 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.244 0.756 35 H 0.087 0.913 36 H 0.127 0.873 37 H 0.080 0.920 38 H 0.127 0.873 39 H 0.168 0.832 40 H 0.183 0.817 41 H 0.191 0.809 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -20.654 -7.543 -4.056 22.359 hybrid contribution 1.108 0.056 -0.080 1.113 sum -19.546 -7.486 -4.135 21.335 Atomic orbital electron populations 1.20733 0.82412 1.05707 1.05148 1.22342 0.97544 0.84517 1.05265 1.21763 0.89258 1.00920 1.10034 1.21870 0.95221 0.90136 1.11534 1.16761 0.81022 0.85685 0.76249 1.90677 1.86876 1.13776 1.54920 1.49582 1.04821 1.11971 1.69295 1.23839 0.95427 0.82186 1.00630 1.19804 0.91845 0.91017 0.79483 1.86023 1.92391 1.41731 1.19769 1.21688 1.08582 1.06867 1.21823 0.90312 1.25846 1.00176 0.96706 0.94252 1.69358 1.40175 1.19579 1.26978 0.85238 0.78352 0.78067 0.78361 1.18779 1.20497 1.20193 1.23418 0.77650 0.99128 1.00985 1.73770 1.02598 1.14803 1.19587 1.43114 1.02640 1.06130 1.50139 1.18047 0.98394 0.79708 1.03235 1.21144 0.99827 0.94112 0.99419 1.21389 0.97356 0.94359 0.99365 1.21779 0.93784 1.01634 0.95116 1.21512 1.00965 0.90521 0.98273 1.21416 0.94759 0.99390 0.98401 0.87805 0.87559 0.89339 0.80488 0.92819 0.89871 0.75558 0.91348 0.87282 0.92002 0.87269 0.83226 0.81705 0.80937 0.82913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 8.57 71.23 0.61 -0.54 16 2 C 0.02 0.67 6.75 41.27 0.28 0.95 16 3 C -0.19 -6.43 10.72 22.42 0.24 -6.19 16 4 C -0.03 -1.19 7.10 42.45 0.30 -0.89 16 5 C 0.61 29.80 8.07 86.73 0.70 30.50 16 6 O -0.58 -30.01 17.70 -3.96 -0.07 -30.08 16 7 N -0.63 -30.59 3.69 -862.90 -3.19 -33.77 16 8 C 0.10 5.05 7.19 83.09 0.60 5.65 16 9 C 0.22 11.47 1.57 -11.28 -0.02 11.45 16 10 O -0.59 -33.18 13.54 -148.98 -2.02 -35.20 16 11 C -0.55 -28.78 8.69 25.60 0.22 -28.56 16 12 H 0.08 3.92 7.81 -2.91 -0.02 3.90 16 13 C 0.03 1.55 5.39 84.65 0.46 2.00 16 14 N -0.92 -48.73 11.01 21.44 0.24 -48.49 16 15 Si 0.98 40.32 29.54 68.60 2.03 42.34 16 16 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 17 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 18 H -0.28 -11.14 7.11 99.48 0.71 -10.44 16 19 C 0.11 5.25 8.04 83.19 0.67 5.92 16 20 N -0.27 -11.20 10.14 -48.16 -0.49 -11.68 16 21 N -0.24 -7.64 3.47 -175.58 -0.61 -8.25 16 22 C 0.10 2.50 6.20 38.12 0.24 2.74 16 23 C -0.13 -3.28 9.69 22.39 0.22 -3.07 16 24 C -0.11 -1.93 10.04 22.25 0.22 -1.71 16 25 C -0.11 -1.30 10.04 22.29 0.22 -1.08 16 26 C -0.09 -1.11 10.04 22.25 0.22 -0.89 16 27 C -0.12 -2.09 8.21 22.39 0.18 -1.90 16 28 H 0.10 1.01 7.69 -2.39 -0.02 0.99 16 29 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.01 6.83 -2.39 -0.02 1.00 16 31 H 0.18 5.19 8.06 -2.91 -0.02 5.16 16 32 H 0.05 2.82 7.50 -2.39 -0.02 2.80 16 33 H 0.08 3.93 8.10 -2.38 -0.02 3.91 16 34 H 0.39 22.19 6.32 -74.06 -0.47 21.73 16 35 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 36 H 0.11 4.63 8.10 -2.39 -0.02 4.61 16 37 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.11 3.38 8.00 -2.91 -0.02 3.35 16 39 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 41 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 42 H 0.15 2.01 5.99 -2.91 -0.02 2.00 16 Total: -1.00 -73.49 359.89 1.85 -71.64 By element: Atomic # 1 Polarization: 38.52 SS G_CDS: 0.59 Total: 39.12 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 5.37 Total: 14.38 kcal Atomic # 7 Polarization: -98.16 SS G_CDS: -4.05 Total: -102.20 kcal Atomic # 8 Polarization: -63.19 SS G_CDS: -2.09 Total: -65.27 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.34 kcal Total: -73.49 1.85 -71.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186832366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.742 kcal (2) G-P(sol) polarization free energy of solvation -73.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds