Wall clock time and date at job start Tue Mar 31 2020 14:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38065 * 126.31058 * 2 1 4 4 C 1.47416 * 126.40904 * 359.77489 * 3 2 1 5 5 O 1.21608 * 119.99653 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99935 * 179.97438 * 4 3 2 7 7 C 1.47072 * 136.05635 * 359.63762 * 6 4 3 8 8 C 1.53239 * 88.07752 * 207.19934 * 7 6 4 9 9 O 1.42890 * 114.19887 * 87.73333 * 8 7 6 10 10 C 1.50709 * 114.32132 * 220.47156 * 8 7 6 11 11 H 1.07993 * 119.99974 * 93.76165 * 10 8 7 12 12 C 1.37882 * 119.99531 * 273.75921 * 10 8 7 13 13 N 1.31505 * 120.00355 * 0.02562 * 12 10 8 14 14 Si 1.86795 * 119.99623 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47231 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47375 * 120.00098 * 14 12 10 17 17 H 1.48507 * 109.47277 * 239.99978 * 14 12 10 18 18 C 1.47061 * 136.05732 * 180.02562 * 6 4 3 19 19 C 1.41333 * 107.17970 * 179.74363 * 3 2 1 20 20 N 1.30469 * 108.06848 * 0.02562 * 19 3 2 21 21 N 1.34545 * 126.31063 * 179.69984 * 2 1 3 22 22 C 1.40155 * 125.76852 * 0.22807 * 21 2 1 23 23 C 1.38844 * 120.06838 * 222.01619 * 22 21 2 24 24 C 1.38113 * 119.93243 * 179.72973 * 23 22 21 25 25 C 1.38283 * 120.06725 * 0.57582 * 24 23 22 26 26 C 1.38274 * 120.13285 * 359.70120 * 25 24 23 27 27 C 1.38120 * 120.06969 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47140 * 84.76872 * 1 2 3 29 29 H 1.09008 * 109.46641 * 204.77147 * 1 2 3 30 30 H 1.08996 * 109.46877 * 324.76274 * 1 2 3 31 31 H 1.08992 * 113.46763 * 321.93036 * 7 6 4 32 32 H 1.09002 * 113.46347 * 92.37028 * 7 6 4 33 33 H 0.96701 * 114.00272 * 86.29460 * 9 8 7 34 34 H 0.97004 * 120.00187 * 179.97438 * 13 12 10 35 35 H 1.09005 * 113.46514 * 267.62930 * 18 6 4 36 36 H 1.09002 * 113.47062 * 38.00973 * 18 6 4 37 37 H 1.07998 * 125.96553 * 180.02562 * 19 3 2 38 38 H 1.08007 * 120.02861 * 0.03378 * 23 22 21 39 39 H 1.08005 * 119.96493 * 180.32267 * 24 23 22 40 40 H 1.07996 * 119.93079 * 179.72349 * 25 24 23 41 41 H 1.08001 * 119.96793 * 180.02562 * 26 25 24 42 42 H 1.07999 * 120.03252 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1126 0.0000 4 6 1.8867 2.5202 -0.0047 5 8 0.7004 2.7878 -0.0086 6 7 2.8010 3.5103 -0.0035 7 6 4.2692 3.5959 0.0080 8 6 4.1329 4.9573 0.6981 9 8 4.0545 4.8864 2.1231 10 6 5.1009 6.0024 0.2060 11 1 4.8070 6.6839 -0.5784 12 6 6.3617 6.0883 0.7576 13 7 6.7197 5.2581 1.7125 14 14 7.5613 7.3840 0.1482 15 1 6.9202 8.1869 -0.9240 16 1 7.9419 8.2747 1.2738 17 1 8.7757 6.7202 -0.3902 18 6 2.7696 4.9806 -0.0064 19 6 3.6598 0.6494 0.0060 20 7 3.6356 -0.6551 0.0089 21 7 2.3037 -1.0842 0.0057 22 6 1.8725 -2.4177 0.0081 23 6 2.5053 -3.3520 0.8171 24 6 2.0744 -4.6642 0.8216 25 6 1.0216 -5.0504 0.0124 26 6 0.3931 -4.1235 -0.7986 27 6 0.8151 -2.8083 -0.8024 28 1 -0.3633 0.0937 -1.0234 29 1 -0.3633 -0.9332 0.4306 30 1 -0.3633 0.8393 0.5929 31 1 4.7432 2.8395 0.6333 32 1 4.7083 3.6560 -0.9879 33 1 4.9150 4.8718 2.5641 34 1 7.6068 5.3183 2.1003 35 1 2.8050 5.4135 -1.0062 36 1 1.9708 5.3990 0.6059 37 1 4.5455 1.2673 0.0080 38 1 3.3304 -3.0518 1.4460 39 1 2.5629 -5.3903 1.4546 40 1 0.6894 -6.0780 0.0143 41 1 -0.4291 -4.4280 -1.4292 42 1 0.3235 -2.0848 -1.4359 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186838935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:50 Heat of formation + Delta-G solvation = 67.195878 kcal Electronic energy + Delta-G solvation = -27068.196663 eV Core-core repulsion = 23209.735770 eV Total energy + Delta-G solvation = -3858.460894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.71325 -39.55880 -39.02766 -37.16224 -34.10810 -33.74722 -32.24282 -32.17812 -31.17496 -29.71686 -28.56290 -27.12551 -25.28528 -25.22698 -23.37932 -23.24879 -21.80650 -20.49503 -19.69597 -18.33792 -17.76169 -17.29843 -16.61490 -15.97596 -15.74792 -15.47235 -15.03747 -14.99009 -14.73134 -14.30588 -14.09050 -13.97788 -13.78681 -13.28926 -13.20091 -12.94560 -12.74064 -12.56777 -12.35211 -12.23239 -11.95094 -11.85433 -11.56871 -11.54575 -11.08747 -10.93989 -10.80314 -10.46092 -10.23259 -10.12136 -9.60768 -9.38151 -9.18061 -8.95142 -8.76853 -8.41406 -8.33089 -7.76141 -6.39641 -4.49756 0.61793 0.95514 1.74896 2.23020 2.36949 3.14263 3.23994 3.27524 3.33065 3.65310 3.91586 4.19237 4.42402 4.48562 4.55319 4.73339 4.75707 4.83732 4.95034 4.97936 5.15152 5.25001 5.35310 5.50313 5.51821 5.60097 5.63442 5.78843 5.93939 5.95619 6.01781 6.05456 6.09858 6.22838 6.38839 6.44601 6.47839 6.53050 6.68365 6.77555 7.03769 7.12901 7.58300 7.63932 7.81727 8.52698 8.56888 8.86520 9.21778 9.50954 10.66962 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.023614 B = 0.002743 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.467092 B =10205.437311 C =10961.561070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.150 3.850 3 C -0.269 4.269 4 C 0.615 3.385 5 O -0.569 6.569 6 N -0.629 5.629 7 C 0.067 3.933 8 C 0.240 3.760 9 O -0.571 6.571 10 C -0.532 4.532 11 H 0.073 0.927 12 C 0.071 3.929 13 N -0.898 5.898 14 Si 0.908 3.092 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.281 1.281 18 C 0.111 3.889 19 C 0.092 3.908 20 N -0.296 5.296 21 N -0.324 5.324 22 C 0.152 3.848 23 C -0.106 4.106 24 C -0.103 4.103 25 C -0.121 4.121 26 C -0.102 4.102 27 C -0.125 4.125 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.394 0.606 34 H 0.273 0.727 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.201 0.799 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.133 0.867 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.195 -17.739 -3.642 19.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.022 3.978 3 C -0.283 4.283 4 C 0.406 3.594 5 O -0.451 6.451 6 N -0.361 5.361 7 C -0.056 4.056 8 C 0.198 3.802 9 O -0.384 6.384 10 C -0.570 4.570 11 H 0.091 0.909 12 C -0.131 4.131 13 N -0.538 5.538 14 Si 0.735 3.265 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.207 1.207 18 C -0.011 4.011 19 C -0.096 4.096 20 N -0.113 5.113 21 N -0.099 5.099 22 C 0.062 3.938 23 C -0.125 4.125 24 C -0.122 4.122 25 C -0.139 4.139 26 C -0.120 4.120 27 C -0.145 4.145 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.124 0.876 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.250 0.750 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.217 0.783 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.733 -18.938 -3.629 21.168 hybrid contribution 1.146 1.262 -0.223 1.719 sum -7.588 -17.677 -3.852 19.618 Atomic orbital electron populations 1.20719 0.86000 1.04280 1.04348 1.21546 0.94882 0.85593 0.95772 1.20095 0.92681 0.93711 1.21767 1.16524 0.84238 0.82492 0.76191 1.90670 1.16182 1.84072 1.54145 1.49393 1.08762 1.07273 1.70672 1.24286 0.78133 1.01996 1.01168 1.19492 0.90193 0.90176 0.80360 1.86053 1.37717 1.96393 1.18202 1.21472 0.97392 1.17115 1.21021 0.90856 1.25078 0.98119 0.95640 0.94257 1.69268 1.21398 1.36991 1.26173 0.86269 0.80290 0.81007 0.78893 1.19420 1.20655 1.20688 1.23308 0.99570 0.78238 1.00033 1.24674 0.98262 0.91511 0.95129 1.77327 0.94582 1.13462 1.25920 1.45602 1.04797 1.03361 1.56165 1.17468 0.97006 0.80975 0.98394 1.21107 1.00448 0.92883 0.98097 1.21095 0.96846 0.95207 0.99036 1.21274 0.96225 0.99923 0.96513 1.21019 0.99949 0.91994 0.99076 1.21159 0.97532 0.97314 0.98506 0.89494 0.91189 0.87560 0.91555 0.89896 0.74998 0.91629 0.89679 0.91476 0.78257 0.84815 0.85005 0.85350 0.84937 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 8.16 36.01 0.29 -0.94 16 2 C 0.15 2.42 6.82 -81.47 -0.56 1.86 16 3 C -0.27 -5.00 6.13 -105.05 -0.64 -5.64 16 4 C 0.61 13.04 8.06 -12.52 -0.10 12.93 16 5 O -0.57 -12.91 15.75 5.27 0.08 -12.83 16 6 N -0.63 -13.47 3.69 -186.68 -0.69 -14.16 16 7 C 0.07 1.42 6.51 -8.64 -0.06 1.36 16 8 C 0.24 5.68 1.57 -91.40 -0.14 5.54 16 9 O -0.57 -14.68 13.53 -35.23 -0.48 -15.15 16 10 C -0.53 -13.08 8.69 -34.43 -0.30 -13.38 16 11 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 12 C 0.07 1.75 5.39 -17.82 -0.10 1.65 16 13 N -0.90 -22.42 11.01 55.43 0.61 -21.81 16 14 Si 0.91 19.21 29.54 -169.99 -5.02 14.19 16 15 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 18 C 0.11 2.41 8.03 -8.52 -0.07 2.34 16 19 C 0.09 1.62 11.14 -16.95 -0.19 1.44 16 20 N -0.30 -5.08 12.33 30.87 0.38 -4.70 16 21 N -0.32 -5.02 3.67 -6.51 -0.02 -5.04 16 22 C 0.15 1.92 6.05 -83.60 -0.51 1.42 16 23 C -0.11 -1.18 9.84 -39.40 -0.39 -1.56 16 24 C -0.10 -0.85 10.04 -39.61 -0.40 -1.25 16 25 C -0.12 -0.86 10.04 -39.55 -0.40 -1.26 16 26 C -0.10 -0.77 10.04 -39.61 -0.40 -1.17 16 27 C -0.12 -1.25 8.27 -39.40 -0.33 -1.58 16 28 H 0.09 0.99 8.07 -51.93 -0.42 0.57 16 29 H 0.07 0.73 6.86 -51.92 -0.36 0.38 16 30 H 0.11 1.56 6.80 -51.93 -0.35 1.21 16 31 H 0.07 1.38 6.16 -51.93 -0.32 1.06 16 32 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 33 H 0.39 10.22 6.33 45.56 0.29 10.51 16 34 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 35 H 0.09 1.68 8.10 -51.93 -0.42 1.26 16 36 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.20 3.34 5.22 -52.49 -0.27 3.07 16 38 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 39 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 40 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.13 1.22 6.93 -52.49 -0.36 0.85 16 LS Contribution 354.70 15.07 5.35 5.35 Total: -1.00 -29.85 354.70 -8.36 -38.21 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -4.30 Total: 14.19 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -4.27 Total: 1.77 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.28 Total: -45.71 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.39 Total: -27.98 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.85 -8.36 -38.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186838935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.407 kcal (2) G-P(sol) polarization free energy of solvation -29.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds