Wall clock time and date at job start Tue Mar 31 2020 14:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38065 * 126.31058 * 2 1 4 4 C 1.47416 * 126.40904 * 359.77489 * 3 2 1 5 5 O 1.21608 * 119.99653 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99935 * 179.97438 * 4 3 2 7 7 C 1.47072 * 136.05635 * 359.63762 * 6 4 3 8 8 C 1.53239 * 88.07752 * 207.19934 * 7 6 4 9 9 O 1.42890 * 114.19887 * 87.73333 * 8 7 6 10 10 C 1.50709 * 114.32132 * 220.47156 * 8 7 6 11 11 H 1.07993 * 119.99974 * 93.76165 * 10 8 7 12 12 C 1.37882 * 119.99531 * 273.75921 * 10 8 7 13 13 N 1.31505 * 120.00355 * 0.02562 * 12 10 8 14 14 Si 1.86795 * 119.99623 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47231 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47375 * 120.00098 * 14 12 10 17 17 H 1.48507 * 109.47277 * 239.99978 * 14 12 10 18 18 C 1.47061 * 136.05732 * 180.02562 * 6 4 3 19 19 C 1.41333 * 107.17970 * 179.74363 * 3 2 1 20 20 N 1.30469 * 108.06848 * 0.02562 * 19 3 2 21 21 N 1.34545 * 126.31063 * 179.69984 * 2 1 3 22 22 C 1.40155 * 125.76852 * 0.22807 * 21 2 1 23 23 C 1.38844 * 120.06838 * 222.01619 * 22 21 2 24 24 C 1.38113 * 119.93243 * 179.72973 * 23 22 21 25 25 C 1.38283 * 120.06725 * 0.57582 * 24 23 22 26 26 C 1.38274 * 120.13285 * 359.70120 * 25 24 23 27 27 C 1.38120 * 120.06969 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47140 * 84.76872 * 1 2 3 29 29 H 1.09008 * 109.46641 * 204.77147 * 1 2 3 30 30 H 1.08996 * 109.46877 * 324.76274 * 1 2 3 31 31 H 1.08992 * 113.46763 * 321.93036 * 7 6 4 32 32 H 1.09002 * 113.46347 * 92.37028 * 7 6 4 33 33 H 0.96701 * 114.00272 * 86.29460 * 9 8 7 34 34 H 0.97004 * 120.00187 * 179.97438 * 13 12 10 35 35 H 1.09005 * 113.46514 * 267.62930 * 18 6 4 36 36 H 1.09002 * 113.47062 * 38.00973 * 18 6 4 37 37 H 1.07998 * 125.96553 * 180.02562 * 19 3 2 38 38 H 1.08007 * 120.02861 * 0.03378 * 23 22 21 39 39 H 1.08005 * 119.96493 * 180.32267 * 24 23 22 40 40 H 1.07996 * 119.93079 * 179.72349 * 25 24 23 41 41 H 1.08001 * 119.96793 * 180.02562 * 26 25 24 42 42 H 1.07999 * 120.03252 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1126 0.0000 4 6 1.8867 2.5202 -0.0047 5 8 0.7004 2.7878 -0.0086 6 7 2.8010 3.5103 -0.0035 7 6 4.2692 3.5959 0.0080 8 6 4.1329 4.9573 0.6981 9 8 4.0545 4.8864 2.1231 10 6 5.1009 6.0024 0.2060 11 1 4.8070 6.6839 -0.5784 12 6 6.3617 6.0883 0.7576 13 7 6.7197 5.2581 1.7125 14 14 7.5613 7.3840 0.1482 15 1 6.9202 8.1869 -0.9240 16 1 7.9419 8.2747 1.2738 17 1 8.7757 6.7202 -0.3902 18 6 2.7696 4.9806 -0.0064 19 6 3.6598 0.6494 0.0060 20 7 3.6356 -0.6551 0.0089 21 7 2.3037 -1.0842 0.0057 22 6 1.8725 -2.4177 0.0081 23 6 2.5053 -3.3520 0.8171 24 6 2.0744 -4.6642 0.8216 25 6 1.0216 -5.0504 0.0124 26 6 0.3931 -4.1235 -0.7986 27 6 0.8151 -2.8083 -0.8024 28 1 -0.3633 0.0937 -1.0234 29 1 -0.3633 -0.9332 0.4306 30 1 -0.3633 0.8393 0.5929 31 1 4.7432 2.8395 0.6333 32 1 4.7083 3.6560 -0.9879 33 1 4.9150 4.8718 2.5641 34 1 7.6068 5.3183 2.1003 35 1 2.8050 5.4135 -1.0062 36 1 1.9708 5.3990 0.6059 37 1 4.5455 1.2673 0.0080 38 1 3.3304 -3.0518 1.4460 39 1 2.5629 -5.3903 1.4546 40 1 0.6894 -6.0780 0.0143 41 1 -0.4291 -4.4280 -1.4292 42 1 0.3235 -2.0848 -1.4359 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186838935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:49 Heat of formation + Delta-G solvation = 48.161884 kcal Electronic energy + Delta-G solvation = -27069.022039 eV Core-core repulsion = 23209.735770 eV Total energy + Delta-G solvation = -3859.286269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.94182 -41.12029 -39.96682 -38.85935 -35.89966 -34.88718 -34.10127 -33.35464 -31.93378 -31.06453 -29.85385 -28.49171 -27.03349 -26.88776 -24.38289 -24.14657 -23.09519 -21.72492 -21.15446 -19.91519 -19.35165 -18.69394 -17.56658 -17.25324 -17.10712 -17.00962 -16.67004 -16.23635 -16.11985 -15.81327 -15.25126 -15.04097 -14.90443 -14.61686 -14.50534 -14.10147 -14.05995 -13.92474 -13.78133 -13.62966 -13.39233 -13.32989 -12.79241 -12.68370 -12.57795 -12.35594 -12.21260 -12.10188 -12.02073 -11.35153 -11.16780 -10.93382 -10.63461 -10.22344 -10.12392 -10.05732 -9.60024 -9.34539 -8.25462 -6.42144 -0.27372 0.27870 0.59220 0.98750 1.11809 1.47202 1.51958 1.62275 2.01466 2.33792 2.43114 2.63906 2.96775 3.34171 3.40905 3.68251 3.75517 3.84346 3.85208 3.99401 4.14103 4.17204 4.20881 4.37243 4.42014 4.50198 4.51552 4.56376 4.66210 4.71047 4.80837 4.89084 4.96033 4.99947 5.01445 5.17499 5.26826 5.30510 5.33878 5.45027 5.69795 5.75311 5.93154 6.03246 6.31013 6.64204 6.87745 7.19810 7.32103 7.51177 8.80823 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.023614 B = 0.002743 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.467092 B =10205.437311 C =10961.561070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.160 3.840 3 C -0.304 4.304 4 C 0.611 3.389 5 O -0.590 6.590 6 N -0.633 5.633 7 C 0.082 3.918 8 C 0.219 3.781 9 O -0.586 6.586 10 C -0.548 4.548 11 H 0.076 0.924 12 C 0.031 3.969 13 N -0.918 5.918 14 Si 0.971 3.029 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.278 1.278 18 C 0.112 3.888 19 C 0.087 3.913 20 N -0.312 5.312 21 N -0.314 5.314 22 C 0.108 3.892 23 C -0.122 4.122 24 C -0.102 4.102 25 C -0.107 4.107 26 C -0.096 4.096 27 C -0.128 4.128 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.389 0.611 34 H 0.276 0.724 35 H 0.105 0.895 36 H 0.056 0.944 37 H 0.201 0.799 38 H 0.118 0.882 39 H 0.156 0.844 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.159 -20.263 -4.803 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.029 3.971 3 C -0.318 4.318 4 C 0.404 3.596 5 O -0.474 6.474 6 N -0.365 5.365 7 C -0.041 4.041 8 C 0.178 3.822 9 O -0.399 6.399 10 C -0.586 4.586 11 H 0.094 0.906 12 C -0.169 4.169 13 N -0.559 5.559 14 Si 0.796 3.204 15 H -0.190 1.190 16 H -0.209 1.209 17 H -0.203 1.203 18 C -0.010 4.010 19 C -0.101 4.101 20 N -0.129 5.129 21 N -0.088 5.088 22 C 0.018 3.982 23 C -0.142 4.142 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.114 4.114 27 C -0.148 4.148 28 H 0.124 0.876 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.245 0.755 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.074 0.926 37 H 0.217 0.783 38 H 0.136 0.864 39 H 0.174 0.826 40 H 0.183 0.817 41 H 0.184 0.816 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.695 -21.495 -4.795 24.063 hybrid contribution 1.351 1.826 0.162 2.277 sum -8.345 -19.670 -4.633 21.863 Atomic orbital electron populations 1.20784 0.83749 1.04859 1.05351 1.21960 0.96176 0.85127 0.93792 1.19983 0.93680 0.92986 1.25194 1.16895 0.83895 0.83358 0.75464 1.90637 1.16878 1.84610 1.55299 1.49410 1.08869 1.07167 1.71059 1.24090 0.78187 1.00426 1.01380 1.19770 0.91376 0.91582 0.79499 1.86037 1.37552 1.96611 1.19703 1.21680 0.97900 1.17626 1.21381 0.90562 1.25772 0.99493 0.97275 0.94379 1.69334 1.21797 1.37964 1.26765 0.85306 0.78233 0.78634 0.78232 1.18973 1.20882 1.20344 1.23320 0.98160 0.78875 1.00636 1.24632 0.98084 0.91795 0.95557 1.77251 0.96244 1.13085 1.26337 1.45799 1.03917 1.04525 1.54512 1.17930 0.99259 0.79814 1.01177 1.21168 1.00483 0.94180 0.98384 1.21420 0.97121 0.94184 0.99325 1.21758 0.94649 1.01534 0.94554 1.21455 1.00287 0.90749 0.98888 1.21353 0.96627 0.98755 0.98037 0.87623 0.88478 0.89415 0.91786 0.88635 0.75541 0.91413 0.87679 0.92584 0.78289 0.86439 0.82596 0.81741 0.81611 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.23 8.16 71.24 0.58 -1.65 16 2 C 0.16 5.17 6.82 42.10 0.29 5.46 16 3 C -0.30 -11.64 6.13 -20.14 -0.12 -11.76 16 4 C 0.61 26.62 8.06 86.66 0.70 27.32 16 5 O -0.59 -27.41 15.75 -4.06 -0.06 -27.47 16 6 N -0.63 -27.78 3.69 -863.27 -3.19 -30.97 16 7 C 0.08 3.54 6.51 83.09 0.54 4.08 16 8 C 0.22 10.60 1.57 -11.30 -0.02 10.58 16 9 O -0.59 -31.14 13.53 -148.98 -2.02 -33.16 16 10 C -0.55 -27.09 8.69 25.60 0.22 -26.87 16 11 H 0.08 3.64 7.81 -2.91 -0.02 3.61 16 12 C 0.03 1.52 5.39 84.66 0.46 1.98 16 13 N -0.92 -46.34 11.01 21.45 0.24 -46.11 16 14 Si 0.97 39.24 29.54 68.60 2.03 41.27 16 15 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 16 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 17 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 18 C 0.11 4.98 8.03 83.17 0.67 5.65 16 19 C 0.09 3.17 11.14 85.66 0.95 4.12 16 20 N -0.31 -10.99 12.33 -56.24 -0.69 -11.68 16 21 N -0.31 -9.72 3.67 -174.51 -0.64 -10.36 16 22 C 0.11 2.61 6.05 38.10 0.23 2.84 16 23 C -0.12 -2.62 9.84 22.39 0.22 -2.40 16 24 C -0.10 -1.39 10.04 22.25 0.22 -1.16 16 25 C -0.11 -1.04 10.04 22.29 0.22 -0.82 16 26 C -0.10 -1.05 10.04 22.25 0.22 -0.82 16 27 C -0.13 -2.23 8.27 22.39 0.19 -2.05 16 28 H 0.11 2.24 8.07 -2.39 -0.02 2.22 16 29 H 0.10 1.85 6.86 -2.38 -0.02 1.83 16 30 H 0.09 2.57 6.80 -2.39 -0.02 2.56 16 31 H 0.06 2.77 6.16 -2.39 -0.01 2.76 16 32 H 0.10 3.84 8.10 -2.39 -0.02 3.82 16 33 H 0.39 20.91 6.33 -74.06 -0.47 20.44 16 34 H 0.28 13.18 8.31 -92.70 -0.77 12.41 16 35 H 0.11 4.16 8.10 -2.38 -0.02 4.14 16 36 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.20 7.02 5.22 -2.91 -0.02 7.00 16 38 H 0.12 2.80 8.06 -2.91 -0.02 2.78 16 39 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 40 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 41 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 42 H 0.14 2.19 6.93 -2.91 -0.02 2.17 16 Total: -1.00 -65.92 354.70 1.84 -64.08 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: 0.61 Total: 39.90 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 5.57 Total: 14.49 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -4.29 Total: -99.11 kcal Atomic # 8 Polarization: -58.55 SS G_CDS: -2.08 Total: -60.63 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -65.92 1.84 -64.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186838935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.243 kcal (2) G-P(sol) polarization free energy of solvation -65.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds