Wall clock time and date at job start Tue Mar 31 2020 15:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35424 * 119.58224 * 2 1 4 4 C 1.41910 * 117.82859 * 179.72132 * 3 2 1 5 5 O 1.22109 * 121.40589 * 180.27374 * 4 3 2 6 6 C 1.47137 * 117.18428 * 0.46767 * 4 3 2 7 7 C 1.47664 * 120.62023 * 179.80684 * 6 4 3 8 8 O 1.21578 * 120.00143 * 359.71743 * 7 6 4 9 9 N 1.34778 * 119.99860 * 179.71775 * 7 6 4 10 10 C 1.46505 * 119.99765 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.46960 * 35.00210 * 10 9 7 12 12 C 1.53005 * 109.47152 * 275.00227 * 10 9 7 13 13 C 1.50700 * 109.46932 * 155.00095 * 10 9 7 14 14 H 1.08003 * 119.99951 * 32.83966 * 13 10 9 15 15 C 1.37878 * 120.00131 * 212.83546 * 13 10 9 16 16 N 1.31512 * 120.00079 * 179.51765 * 15 13 10 17 17 Si 1.86803 * 119.99602 * 359.51343 * 15 13 10 18 18 H 1.48504 * 109.46977 * 87.85334 * 17 15 13 19 19 H 1.48503 * 109.46857 * 207.84652 * 17 15 13 20 20 H 1.48489 * 109.47454 * 327.84936 * 17 15 13 21 21 N 1.31637 * 118.75892 * 359.52582 * 6 4 3 22 22 N 1.28185 * 122.09491 * 0.25586 * 21 6 4 23 23 C 1.39895 * 118.35422 * 179.97438 * 22 21 6 24 24 C 1.38914 * 120.07472 * 133.52831 * 23 22 21 25 25 C 1.38106 * 119.91924 * 179.70610 * 24 23 22 26 26 C 1.38292 * 120.07703 * 0.59668 * 25 24 23 27 27 C 1.38300 * 120.14873 * 359.67926 * 26 25 24 28 28 C 1.38099 * 120.07180 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.46874 * 266.60311 * 1 2 3 30 30 H 1.08993 * 109.47499 * 26.61002 * 1 2 3 31 31 H 1.09001 * 109.46864 * 146.60923 * 1 2 3 32 32 H 1.08001 * 121.08493 * 359.95964 * 3 2 1 33 33 H 0.96991 * 120.00063 * 0.02562 * 9 7 6 34 34 H 1.08994 * 109.46860 * 55.91629 * 12 10 9 35 35 H 1.09002 * 109.46796 * 295.91276 * 12 10 9 36 36 H 1.09002 * 109.46564 * 175.91393 * 12 10 9 37 37 H 0.97001 * 120.00087 * 180.02562 * 16 15 13 38 38 H 1.07991 * 120.03978 * 0.02562 * 24 23 22 39 39 H 1.08004 * 119.95604 * 180.29828 * 25 24 23 40 40 H 1.07995 * 119.92842 * 179.69956 * 26 25 24 41 41 H 1.07999 * 119.96311 * 180.02562 * 27 26 25 42 42 H 1.07999 * 120.03084 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1755 1.1777 0.0000 4 6 3.5940 1.1343 0.0061 5 8 4.2618 2.1565 0.0115 6 6 4.2258 -0.1945 0.0013 7 6 5.6964 -0.3280 0.0028 8 8 6.3971 0.6656 0.0029 9 7 6.2620 -1.5514 0.0041 10 6 7.7210 -1.6839 0.0051 11 1 8.1586 -0.8779 0.5942 12 6 8.2412 -1.6058 -1.4317 13 6 8.1045 -3.0113 0.6068 14 1 7.4633 -3.8701 0.4732 15 6 9.2738 -3.1294 1.3277 16 7 9.6037 -4.2854 1.8608 17 14 10.3895 -1.6472 1.5471 18 1 9.9653 -0.8817 2.7468 19 1 11.7914 -2.1046 1.7219 20 1 10.2986 -0.7773 0.3471 21 7 3.4557 -1.2620 0.0012 22 7 2.1765 -1.1790 0.0004 23 6 1.4338 -2.3645 -0.0001 24 6 0.3620 -2.5149 0.8707 25 6 -0.3728 -3.6842 0.8633 26 6 -0.0351 -4.7095 -0.0012 27 6 1.0349 -4.5652 -0.8655 28 6 1.7701 -3.3962 -0.8675 29 1 -0.3633 -0.0609 1.0259 30 1 -0.3634 0.9187 -0.4603 31 1 -0.3633 -0.8581 -0.5656 32 1 1.6465 2.1193 -0.0007 33 1 5.7030 -2.3441 0.0037 34 1 7.9022 -0.6773 -1.8909 35 1 7.8610 -2.4533 -2.0022 36 1 9.3309 -1.6315 -1.4255 37 1 10.4262 -4.3684 2.3683 38 1 0.1005 -1.7164 1.5492 39 1 -1.2092 -3.7999 1.5368 40 1 -0.6084 -5.6247 -0.0016 41 1 1.2957 -5.3677 -1.5396 42 1 2.6053 -3.2841 -1.5430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194744100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:32 Heat of formation + Delta-G solvation = 34.639780 kcal Electronic energy + Delta-G solvation = -27321.707320 eV Core-core repulsion = 23461.834688 eV Total energy + Delta-G solvation = -3859.872632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.42100 -39.67062 -38.65349 -37.84300 -34.99945 -34.79281 -33.46614 -32.27749 -31.49359 -30.31325 -29.28573 -28.49239 -25.76134 -25.22501 -23.63669 -23.01608 -22.28611 -21.43917 -19.77756 -18.96677 -18.63155 -17.24600 -16.82011 -16.68156 -16.09399 -15.98472 -15.29923 -15.02098 -14.78632 -14.38012 -14.30477 -14.07186 -13.93522 -13.64449 -13.47912 -13.39144 -13.17506 -13.04045 -12.71221 -12.49815 -12.30331 -12.05576 -11.68006 -11.50021 -11.38871 -11.13797 -10.75651 -10.46792 -10.35470 -9.88136 -9.73341 -9.60326 -9.44696 -9.14404 -8.97229 -8.69463 -8.22412 -7.97976 -6.19210 -4.22741 0.39593 0.64596 0.86998 1.18939 1.80975 3.07019 3.20545 3.31042 3.39387 3.47825 3.57451 3.90779 3.94080 4.16266 4.36284 4.37950 4.39560 4.48307 4.59817 4.64610 4.86261 4.90376 5.00265 5.02502 5.18552 5.23959 5.39446 5.44212 5.50915 5.58696 5.79313 5.85219 5.95380 6.02161 6.15684 6.39027 6.51005 6.58007 6.71611 6.97528 7.22979 7.41527 7.55780 7.67223 7.85049 8.18254 8.59435 8.80488 8.96898 9.42743 10.92405 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.003849 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.924253 B = 7272.569291 C = 8927.559441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.131 3.869 3 C -0.268 4.268 4 C 0.380 3.620 5 O -0.450 6.450 6 C -0.015 4.015 7 C 0.569 3.431 8 O -0.517 6.517 9 N -0.685 5.685 10 C 0.232 3.768 11 H 0.051 0.949 12 C -0.150 4.150 13 C -0.529 4.529 14 H 0.080 0.920 15 C 0.082 3.918 16 N -0.890 5.890 17 Si 0.871 3.129 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.257 1.257 21 N -0.177 5.177 22 N -0.272 5.272 23 C 0.119 3.881 24 C -0.118 4.118 25 C -0.105 4.105 26 C -0.110 4.110 27 C -0.102 4.102 28 C -0.093 4.093 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.164 0.836 33 H 0.399 0.601 34 H 0.030 0.970 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.267 0.733 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.136 0.864 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.761 0.068 -4.583 27.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.023 3.977 3 C -0.293 4.293 4 C 0.260 3.740 5 O -0.325 6.325 6 C -0.195 4.195 7 C 0.350 3.650 8 O -0.391 6.391 9 N -0.334 5.334 10 C 0.130 3.870 11 H 0.069 0.931 12 C -0.209 4.209 13 C -0.567 4.567 14 H 0.098 0.902 15 C -0.122 4.122 16 N -0.526 5.526 17 Si 0.698 3.302 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.181 1.181 21 N -0.004 5.004 22 N -0.064 5.064 23 C 0.030 3.970 24 C -0.138 4.138 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.121 4.121 28 C -0.112 4.112 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.181 0.819 33 H 0.233 0.767 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -25.615 0.306 -4.469 26.003 hybrid contribution 0.213 0.962 0.296 1.029 sum -25.402 1.269 -4.173 25.773 Atomic orbital electron populations 1.21364 0.87386 1.05321 1.04328 1.21360 0.96207 0.85706 0.94416 1.22530 0.95520 0.97630 1.13670 1.18852 0.89040 0.88445 0.77640 1.90860 1.66893 1.35211 1.39527 1.25755 0.96161 0.91374 1.06203 1.17179 0.83598 0.85147 0.79116 1.90841 1.60924 1.37269 1.50027 1.46524 1.09960 1.06138 1.70823 1.19165 0.75777 0.98246 0.93858 0.93124 1.22261 1.00851 0.99090 0.98666 1.20987 1.07817 0.94125 1.33725 0.90240 1.24901 0.97456 0.95974 0.93909 1.69877 1.24586 1.24152 1.34031 0.86941 0.79880 0.83323 0.80073 1.19843 1.21128 1.18115 1.71445 0.90811 1.30818 1.07365 1.41546 1.01447 1.04801 1.58594 1.17615 0.94349 0.85650 0.99424 1.21255 0.95782 0.99292 0.97515 1.21028 0.99838 0.92396 0.99147 1.21365 0.97025 0.99033 0.95364 1.21155 0.94877 0.96956 0.99078 1.21189 0.99957 0.92638 0.97456 0.88856 0.88752 0.89476 0.81874 0.76688 0.95063 0.93346 0.92638 0.92283 0.84692 0.84793 0.85138 0.84633 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.66 8.19 36.01 0.29 -0.36 16 2 C 0.13 1.34 6.50 -81.94 -0.53 0.81 16 3 C -0.27 -3.38 9.73 -39.18 -0.38 -3.76 16 4 C 0.38 6.90 6.99 -34.57 -0.24 6.65 16 5 O -0.45 -9.97 16.44 -15.15 -0.25 -10.22 16 6 C -0.02 -0.29 7.04 -80.49 -0.57 -0.85 16 7 C 0.57 12.80 7.78 -12.41 -0.10 12.70 16 8 O -0.52 -13.56 15.24 -14.67 -0.22 -13.78 16 9 N -0.68 -15.20 5.06 -55.93 -0.28 -15.48 16 10 C 0.23 5.79 2.12 -69.08 -0.15 5.65 16 11 H 0.05 1.38 5.06 -51.93 -0.26 1.12 16 12 C -0.15 -3.42 9.32 37.16 0.35 -3.08 16 13 C -0.53 -14.56 9.05 -34.44 -0.31 -14.87 16 14 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 15 C 0.08 2.33 5.47 -17.82 -0.10 2.24 16 16 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 17 Si 0.87 22.07 26.49 -169.99 -4.50 17.56 16 18 H -0.27 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.26 -6.38 6.20 56.52 0.35 -6.03 16 21 N -0.18 -2.75 9.71 34.59 0.34 -2.41 16 22 N -0.27 -3.27 3.40 -6.92 -0.02 -3.30 16 23 C 0.12 1.15 5.11 -83.68 -0.43 0.72 16 24 C -0.12 -0.83 7.52 -39.38 -0.30 -1.13 16 25 C -0.11 -0.58 10.04 -39.61 -0.40 -0.98 16 26 C -0.11 -0.63 10.04 -39.54 -0.40 -1.02 16 27 C -0.10 -0.71 10.04 -39.61 -0.40 -1.11 16 28 C -0.09 -0.85 9.60 -39.38 -0.38 -1.23 16 29 H 0.09 0.33 6.75 -51.93 -0.35 -0.03 16 30 H 0.09 0.35 8.04 -51.93 -0.42 -0.07 16 31 H 0.09 0.41 6.29 -51.93 -0.33 0.08 16 32 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.40 8.03 7.97 -40.82 -0.33 7.70 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 1.26 7.05 -51.93 -0.37 0.90 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.14 0.73 5.90 -52.49 -0.31 0.42 16 39 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 40 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 42 H 0.14 1.34 8.01 -52.49 -0.42 0.92 16 LS Contribution 355.19 15.07 5.35 5.35 Total: -1.00 -36.72 355.19 -7.77 -44.49 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.93 Total: 3.18 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -4.03 Total: 0.37 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.80 Total: -46.95 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.47 Total: -24.00 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.50 Total: 17.56 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.72 -7.77 -44.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194744100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.133 kcal (2) G-P(sol) polarization free energy of solvation -36.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds