Wall clock time and date at job start Tue Mar 31 2020 15:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35424 * 119.58224 * 2 1 4 4 C 1.41910 * 117.82859 * 179.72132 * 3 2 1 5 5 O 1.22109 * 121.40589 * 180.27374 * 4 3 2 6 6 C 1.47137 * 117.18428 * 0.46767 * 4 3 2 7 7 C 1.47664 * 120.62023 * 179.80684 * 6 4 3 8 8 O 1.21578 * 120.00143 * 359.71743 * 7 6 4 9 9 N 1.34778 * 119.99860 * 179.71775 * 7 6 4 10 10 C 1.46505 * 119.99765 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.46960 * 35.00210 * 10 9 7 12 12 C 1.53005 * 109.47152 * 275.00227 * 10 9 7 13 13 C 1.50700 * 109.46932 * 155.00095 * 10 9 7 14 14 H 1.08003 * 119.99951 * 32.83966 * 13 10 9 15 15 C 1.37878 * 120.00131 * 212.83546 * 13 10 9 16 16 N 1.31512 * 120.00079 * 179.51765 * 15 13 10 17 17 Si 1.86803 * 119.99602 * 359.51343 * 15 13 10 18 18 H 1.48504 * 109.46977 * 87.85334 * 17 15 13 19 19 H 1.48503 * 109.46857 * 207.84652 * 17 15 13 20 20 H 1.48489 * 109.47454 * 327.84936 * 17 15 13 21 21 N 1.31637 * 118.75892 * 359.52582 * 6 4 3 22 22 N 1.28185 * 122.09491 * 0.25586 * 21 6 4 23 23 C 1.39895 * 118.35422 * 179.97438 * 22 21 6 24 24 C 1.38914 * 120.07472 * 133.52831 * 23 22 21 25 25 C 1.38106 * 119.91924 * 179.70610 * 24 23 22 26 26 C 1.38292 * 120.07703 * 0.59668 * 25 24 23 27 27 C 1.38300 * 120.14873 * 359.67926 * 26 25 24 28 28 C 1.38099 * 120.07180 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.46874 * 266.60311 * 1 2 3 30 30 H 1.08993 * 109.47499 * 26.61002 * 1 2 3 31 31 H 1.09001 * 109.46864 * 146.60923 * 1 2 3 32 32 H 1.08001 * 121.08493 * 359.95964 * 3 2 1 33 33 H 0.96991 * 120.00063 * 0.02562 * 9 7 6 34 34 H 1.08994 * 109.46860 * 55.91629 * 12 10 9 35 35 H 1.09002 * 109.46796 * 295.91276 * 12 10 9 36 36 H 1.09002 * 109.46564 * 175.91393 * 12 10 9 37 37 H 0.97001 * 120.00087 * 180.02562 * 16 15 13 38 38 H 1.07991 * 120.03978 * 0.02562 * 24 23 22 39 39 H 1.08004 * 119.95604 * 180.29828 * 25 24 23 40 40 H 1.07995 * 119.92842 * 179.69956 * 26 25 24 41 41 H 1.07999 * 119.96311 * 180.02562 * 27 26 25 42 42 H 1.07999 * 120.03084 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1755 1.1777 0.0000 4 6 3.5940 1.1343 0.0061 5 8 4.2618 2.1565 0.0115 6 6 4.2258 -0.1945 0.0013 7 6 5.6964 -0.3280 0.0028 8 8 6.3971 0.6656 0.0029 9 7 6.2620 -1.5514 0.0041 10 6 7.7210 -1.6839 0.0051 11 1 8.1586 -0.8779 0.5942 12 6 8.2412 -1.6058 -1.4317 13 6 8.1045 -3.0113 0.6068 14 1 7.4633 -3.8701 0.4732 15 6 9.2738 -3.1294 1.3277 16 7 9.6037 -4.2854 1.8608 17 14 10.3895 -1.6472 1.5471 18 1 9.9653 -0.8817 2.7468 19 1 11.7914 -2.1046 1.7219 20 1 10.2986 -0.7773 0.3471 21 7 3.4557 -1.2620 0.0012 22 7 2.1765 -1.1790 0.0004 23 6 1.4338 -2.3645 -0.0001 24 6 0.3620 -2.5149 0.8707 25 6 -0.3728 -3.6842 0.8633 26 6 -0.0351 -4.7095 -0.0012 27 6 1.0349 -4.5652 -0.8655 28 6 1.7701 -3.3962 -0.8675 29 1 -0.3633 -0.0609 1.0259 30 1 -0.3634 0.9187 -0.4603 31 1 -0.3633 -0.8581 -0.5656 32 1 1.6465 2.1193 -0.0007 33 1 5.7030 -2.3441 0.0037 34 1 7.9022 -0.6773 -1.8909 35 1 7.8610 -2.4533 -2.0022 36 1 9.3309 -1.6315 -1.4255 37 1 10.4262 -4.3684 2.3683 38 1 0.1005 -1.7164 1.5492 39 1 -1.2092 -3.7999 1.5368 40 1 -0.6084 -5.6247 -0.0016 41 1 1.2957 -5.3677 -1.5396 42 1 2.6053 -3.2841 -1.5430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194744100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:31 Heat of formation + Delta-G solvation = 9.585808 kcal Electronic energy + Delta-G solvation = -27322.793741 eV Core-core repulsion = 23461.834688 eV Total energy + Delta-G solvation = -3860.959054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.48878 -40.92716 -39.91241 -39.08752 -36.76663 -36.00386 -34.54922 -34.27699 -32.17264 -31.77966 -30.42257 -29.31566 -27.36490 -26.93878 -24.42127 -23.97653 -23.32951 -22.70921 -21.62320 -20.30645 -19.80212 -18.84056 -17.85268 -17.74291 -17.33070 -17.18836 -17.09353 -16.16457 -16.08262 -15.58213 -15.43194 -15.20855 -14.93594 -14.85363 -14.62495 -14.56952 -14.30724 -14.28779 -13.97779 -13.90858 -13.37703 -13.27447 -13.16672 -12.83836 -12.82008 -12.43091 -12.41464 -12.11001 -11.88799 -11.44959 -11.33422 -11.27127 -10.91236 -10.47201 -10.29088 -9.98242 -9.96702 -9.18774 -8.41750 -6.48158 -0.68768 -0.38412 0.29698 0.35392 0.83173 1.27070 1.32187 1.44080 1.62785 2.05169 2.25578 2.42045 2.62336 2.90177 3.07691 3.14941 3.23130 3.79680 3.84780 3.87657 3.95533 4.21002 4.27843 4.39170 4.42657 4.43449 4.56969 4.61852 4.67879 4.73586 4.75627 4.86788 4.99487 5.03082 5.04370 5.21574 5.29343 5.30486 5.40734 5.47573 5.51821 5.59594 5.91796 6.06804 6.44470 6.54078 6.60017 6.76775 7.13860 7.26723 8.72989 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.003849 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.924253 B = 7272.569291 C = 8927.559441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.149 3.851 3 C -0.269 4.269 4 C 0.365 3.635 5 O -0.519 6.519 6 C -0.066 4.066 7 C 0.569 3.431 8 O -0.563 6.563 9 N -0.684 5.684 10 C 0.234 3.766 11 H 0.028 0.972 12 C -0.142 4.142 13 C -0.526 4.526 14 H 0.059 0.941 15 C 0.039 3.961 16 N -0.926 5.926 17 Si 0.920 3.080 18 H -0.279 1.279 19 H -0.270 1.270 20 H -0.253 1.253 21 N -0.162 5.162 22 N -0.252 5.252 23 C 0.078 3.922 24 C -0.109 4.109 25 C -0.099 4.099 26 C -0.098 4.098 27 C -0.110 4.110 28 C -0.110 4.110 29 H 0.124 0.876 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.194 0.806 33 H 0.407 0.593 34 H 0.033 0.967 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.272 0.728 38 H 0.157 0.843 39 H 0.169 0.831 40 H 0.160 0.840 41 H 0.149 0.851 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.396 -1.053 -4.333 31.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.040 3.960 3 C -0.294 4.294 4 C 0.252 3.748 5 O -0.400 6.400 6 C -0.241 4.241 7 C 0.353 3.647 8 O -0.440 6.440 9 N -0.333 5.333 10 C 0.131 3.869 11 H 0.046 0.954 12 C -0.201 4.201 13 C -0.564 4.564 14 H 0.078 0.922 15 C -0.162 4.162 16 N -0.564 5.564 17 Si 0.745 3.255 18 H -0.205 1.205 19 H -0.195 1.195 20 H -0.177 1.177 21 N 0.008 4.992 22 N -0.045 5.045 23 C -0.010 4.010 24 C -0.129 4.129 25 C -0.117 4.117 26 C -0.116 4.116 27 C -0.128 4.128 28 C -0.130 4.130 29 H 0.142 0.858 30 H 0.137 0.863 31 H 0.118 0.882 32 H 0.211 0.789 33 H 0.243 0.757 34 H 0.052 0.948 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.175 0.825 39 H 0.187 0.813 40 H 0.177 0.823 41 H 0.167 0.833 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -30.278 -0.864 -4.234 30.585 hybrid contribution 1.248 0.970 0.210 1.595 sum -29.030 0.106 -4.024 29.308 Atomic orbital electron populations 1.21640 0.82546 1.07260 1.06656 1.22151 0.98821 0.83932 0.91079 1.22611 0.92598 1.00026 1.14184 1.19417 0.91259 0.87322 0.76823 1.90820 1.68406 1.36487 1.44298 1.25007 0.94303 0.92723 1.12027 1.17584 0.85435 0.84105 0.77592 1.90789 1.62746 1.38497 1.51994 1.46267 1.08989 1.06797 1.71288 1.18980 0.77377 0.95951 0.94633 0.95369 1.22148 1.00798 0.99831 0.97329 1.21098 1.07381 0.94468 1.33458 0.92247 1.25514 0.98778 0.98021 0.93923 1.69954 1.25494 1.25716 1.35262 0.86162 0.78993 0.80575 0.79789 1.20482 1.19531 1.17670 1.71316 0.92830 1.30065 1.05006 1.42107 1.00464 1.06983 1.54930 1.17994 0.95887 0.85099 1.02010 1.21536 0.94218 1.00547 0.96554 1.21476 1.00074 0.91215 0.98919 1.21802 0.95911 1.00121 0.93810 1.21389 0.95184 0.96400 0.99869 1.21226 1.00189 0.93730 0.97886 0.85789 0.86279 0.88184 0.78883 0.75708 0.94817 0.91921 0.92591 0.91869 0.82546 0.81306 0.82262 0.83342 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 8.19 71.24 0.58 -0.04 16 2 C 0.15 2.63 6.50 41.33 0.27 2.90 16 3 C -0.27 -6.47 9.73 22.53 0.22 -6.26 16 4 C 0.37 13.93 6.99 25.52 0.18 14.11 16 5 O -0.52 -24.75 16.44 13.42 0.22 -24.53 16 6 C -0.07 -2.59 7.04 44.00 0.31 -2.28 16 7 C 0.57 27.29 7.78 86.73 0.67 27.96 16 8 O -0.56 -31.67 15.24 15.13 0.23 -31.44 16 9 N -0.68 -31.86 5.06 -449.13 -2.27 -34.13 16 10 C 0.23 12.11 2.12 44.25 0.09 12.20 16 11 H 0.03 1.60 5.06 -2.39 -0.01 1.59 16 12 C -0.14 -6.63 9.32 71.98 0.67 -5.96 16 13 C -0.53 -29.82 9.05 25.60 0.23 -29.58 16 14 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 15 C 0.04 2.24 5.47 84.66 0.46 2.71 16 16 N -0.93 -56.17 13.96 21.45 0.30 -55.87 16 17 Si 0.92 46.37 26.49 68.60 1.82 48.19 16 18 H -0.28 -14.25 7.11 99.48 0.71 -13.54 16 19 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.25 -12.48 6.20 99.48 0.62 -11.86 16 21 N -0.16 -5.10 9.71 -44.47 -0.43 -5.53 16 22 N -0.25 -5.66 3.40 -175.79 -0.60 -6.25 16 23 C 0.08 1.30 5.11 38.18 0.19 1.50 16 24 C -0.11 -1.01 7.52 22.40 0.17 -0.84 16 25 C -0.10 -0.53 10.04 22.25 0.22 -0.31 16 26 C -0.10 -0.65 10.04 22.30 0.22 -0.43 16 27 C -0.11 -1.23 10.04 22.25 0.22 -1.01 16 28 C -0.11 -1.88 9.60 22.40 0.21 -1.66 16 29 H 0.12 0.03 6.75 -2.39 -0.02 0.01 16 30 H 0.12 0.17 8.04 -2.39 -0.02 0.15 16 31 H 0.10 0.37 6.29 -2.39 -0.02 0.36 16 32 H 0.19 3.38 8.06 -2.91 -0.02 3.35 16 33 H 0.41 17.22 7.97 -92.71 -0.74 16.48 16 34 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.06 2.56 7.05 -2.39 -0.02 2.55 16 37 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.16 0.75 5.90 -2.92 -0.02 0.73 16 39 H 0.17 -0.17 8.06 -2.91 -0.02 -0.19 16 40 H 0.16 0.19 8.06 -2.91 -0.02 0.17 16 41 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 42 H 0.12 2.37 8.01 -2.91 -0.02 2.35 16 Total: -1.00 -87.49 355.19 4.45 -83.03 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.25 Total: 13.53 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 4.94 Total: 13.01 kcal Atomic # 7 Polarization: -98.79 SS G_CDS: -3.00 Total: -101.79 kcal Atomic # 8 Polarization: -56.42 SS G_CDS: 0.45 Total: -55.97 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.82 Total: 48.19 kcal Total: -87.49 4.45 -83.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194744100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.619 kcal (2) G-P(sol) polarization free energy of solvation -87.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds