Wall clock time and date at job start Tue Mar 31 2020 14:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30838 * 125.90083 * 2 1 4 4 N 1.40078 * 108.20698 * 179.97438 * 3 2 1 5 5 H 0.97003 * 126.04128 * 180.02562 * 4 3 2 6 6 C 1.34953 * 107.92546 * 359.75490 * 4 3 2 7 7 C 1.35309 * 107.74332 * 0.39235 * 6 4 3 8 8 C 1.50699 * 126.03752 * 179.86887 * 7 6 4 9 9 N 1.46495 * 109.47309 * 259.68807 * 8 7 6 10 10 C 1.34784 * 120.00463 * 179.97438 * 9 8 7 11 11 O 1.21721 * 119.99310 * 0.02562 * 10 9 8 12 12 C 1.46251 * 120.00564 * 180.02562 * 10 9 8 13 13 C 1.35024 * 120.00158 * 173.07168 * 12 10 9 14 14 C 1.46959 * 119.99972 * 348.87015 * 13 12 10 15 15 C 1.40028 * 120.09993 * 311.82228 * 14 13 12 16 16 C 1.37601 * 119.89483 * 179.69965 * 15 14 13 17 17 C 1.39179 * 120.09980 * 0.59358 * 16 15 14 18 18 O 1.35565 * 119.89401 * 179.69892 * 17 16 15 19 19 C 1.34783 * 116.99961 * 185.61711 * 18 17 16 20 20 H 1.08002 * 119.99929 * 354.91077 * 19 18 17 21 21 C 1.38720 * 120.00304 * 174.90935 * 19 18 17 22 22 N 1.31505 * 120.00192 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99813 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.46942 * 90.00149 * 23 21 19 25 25 H 1.48502 * 109.46680 * 210.00161 * 23 21 19 26 26 H 1.48500 * 109.47106 * 329.99852 * 23 21 19 27 27 C 1.39170 * 120.20438 * 359.67825 * 17 16 15 28 28 C 1.37604 * 120.10275 * 0.02562 * 27 17 16 29 29 H 1.08999 * 109.46937 * 270.02080 * 1 2 3 30 30 H 1.08997 * 109.47036 * 30.02156 * 1 2 3 31 31 H 1.08999 * 109.47430 * 150.02571 * 1 2 3 32 32 H 1.08004 * 126.12248 * 180.23843 * 6 4 3 33 33 H 1.09007 * 109.47242 * 139.69308 * 8 7 6 34 34 H 1.08997 * 109.47354 * 19.69297 * 8 7 6 35 35 H 0.97004 * 120.00082 * 0.02562 * 9 8 7 36 36 H 1.07997 * 119.99348 * 353.06911 * 12 10 9 37 37 H 1.07994 * 119.99517 * 168.59180 * 13 12 10 38 38 H 1.08000 * 120.04897 * 359.97438 * 15 14 13 39 39 H 1.07998 * 119.94517 * 180.26976 * 16 15 14 40 40 H 0.96995 * 120.00248 * 180.02562 * 22 21 19 41 41 H 1.07998 * 119.94881 * 180.02562 * 27 17 16 42 42 H 1.08001 * 120.05290 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 0.0006 5 1 4.3908 1.2079 0.0011 6 6 3.6142 -0.7154 0.0064 7 6 2.3272 -1.1330 0.0006 8 6 1.8599 -2.5657 0.0013 9 7 1.4805 -2.9563 -1.3587 10 6 1.0295 -4.2031 -1.6009 11 8 0.9370 -5.0045 -0.6894 12 6 0.6513 -4.5932 -2.9587 13 6 0.3336 -5.8775 -3.2285 14 6 0.5994 -6.9250 -2.2325 15 6 1.8506 -6.9992 -1.6083 16 6 2.0929 -7.9779 -0.6718 17 6 1.1006 -8.9006 -0.3538 18 8 1.3459 -9.8668 0.5649 19 6 0.3883 -10.7983 0.7438 20 1 -0.5566 -10.7072 0.2286 21 6 0.6163 -11.8739 1.5896 22 7 -0.3179 -12.7830 1.7637 23 14 2.2508 -12.0318 2.4801 24 1 2.1696 -11.3378 3.7904 25 1 2.5586 -13.4680 2.6987 26 1 3.3234 -11.4151 1.6589 27 6 -0.1426 -8.8341 -0.9758 28 6 -0.3959 -7.8552 -1.9091 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 4.4891 -1.3486 0.0120 33 1 0.9987 -2.6668 0.6618 34 1 2.6653 -3.2104 0.3531 35 1 1.5546 -2.3178 -2.0852 36 1 0.6261 -3.8539 -3.7456 37 1 -0.1200 -6.1343 -4.1743 38 1 2.6228 -6.2867 -1.8583 39 1 3.0562 -8.0332 -0.1867 40 1 -0.1586 -13.5349 2.3554 41 1 -0.9097 -9.5520 -0.7256 42 1 -1.3611 -7.8041 -2.3909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254942912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:44 Heat of formation + Delta-G solvation = 63.419660 kcal Electronic energy + Delta-G solvation = -26080.101322 eV Core-core repulsion = 22221.476679 eV Total energy + Delta-G solvation = -3858.624643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.66677 -39.65526 -38.80043 -36.68258 -34.93379 -33.12537 -33.05250 -32.26043 -30.98846 -30.17865 -28.39767 -28.17728 -26.16065 -25.18113 -22.79228 -21.88759 -21.41157 -20.84807 -19.95882 -19.26097 -18.16669 -17.76901 -17.28580 -16.78281 -15.83956 -15.17843 -15.07281 -14.77376 -14.60678 -14.45607 -13.92023 -13.81886 -13.63474 -13.42684 -13.28499 -13.12515 -13.00600 -12.79405 -12.57267 -12.50591 -12.28776 -12.17740 -12.07315 -11.37875 -10.93843 -10.91178 -10.72589 -10.66691 -10.12157 -9.75530 -9.62185 -9.40861 -9.21297 -8.96820 -8.89206 -8.72678 -8.02217 -6.96702 -6.39069 -4.03108 1.25620 1.46404 2.20872 2.35818 2.47387 2.60309 3.25724 3.28495 3.43242 3.57641 3.64088 4.26766 4.28685 4.41521 4.64201 4.85577 4.92847 4.94092 5.09364 5.14578 5.17513 5.21438 5.33606 5.54640 5.55859 5.60831 5.69838 5.73259 5.78914 5.83847 6.20586 6.26120 6.30395 6.39399 6.52453 6.54985 6.69439 6.85259 6.95167 7.20536 7.27660 7.33768 7.41371 7.69658 7.71475 7.87624 8.09575 8.55542 8.96319 9.61259 10.68421 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.002446 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.031409 B =11445.242290 C =12354.742359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.094 3.906 3 N -0.298 5.298 4 N -0.478 5.478 5 H 0.440 0.560 6 C 0.081 3.919 7 C -0.255 4.255 8 C 0.201 3.799 9 N -0.732 5.732 10 C 0.537 3.463 11 O -0.513 6.513 12 C -0.256 4.256 13 C 0.020 3.980 14 C -0.170 4.170 15 C -0.002 4.002 16 C -0.198 4.198 17 C 0.174 3.826 18 O -0.215 6.215 19 C -0.387 4.387 20 H 0.108 0.892 21 C 0.063 3.937 22 N -0.879 5.879 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.259 1.259 27 C -0.233 4.233 28 C -0.047 4.047 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.179 0.821 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.395 0.605 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.279 0.721 41 H 0.132 0.868 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.056 24.916 -8.421 26.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.074 4.074 3 N -0.122 5.122 4 N -0.185 5.185 5 H 0.284 0.716 6 C -0.068 4.068 7 C -0.267 4.267 8 C 0.077 3.923 9 N -0.386 5.386 10 C 0.327 3.673 11 O -0.389 6.389 12 C -0.278 4.278 13 C 0.001 3.999 14 C -0.171 4.171 15 C -0.021 4.021 16 C -0.217 4.217 17 C 0.121 3.879 18 O -0.119 6.119 19 C -0.462 4.462 20 H 0.125 0.875 21 C -0.140 4.140 22 N -0.516 5.516 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.252 4.252 28 C -0.065 4.065 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.197 0.803 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.228 0.772 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.121 0.879 39 H 0.131 0.869 40 H 0.089 0.911 41 H 0.149 0.851 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.150 25.320 -7.456 27.102 hybrid contribution 1.042 -0.298 0.097 1.089 sum 7.192 25.022 -7.359 27.055 Atomic orbital electron populations 1.20250 0.86435 1.03602 1.03432 1.22343 0.97145 0.90024 0.97881 1.77328 0.86657 1.22503 1.25679 1.46244 1.07438 1.05492 1.59284 0.71556 1.22523 0.99421 0.85308 0.99502 1.20068 0.92044 0.96115 1.18439 1.19317 1.00115 0.88595 0.84277 1.46109 1.68284 1.14011 1.10161 1.18488 0.77432 0.81408 0.90001 1.91002 1.52007 1.49732 1.46123 1.22689 1.12037 0.97326 0.95700 1.22348 0.88985 0.91880 0.96701 1.18346 0.95874 0.99136 1.03775 1.20419 0.94968 0.93943 0.92760 1.19993 0.98870 0.99048 1.03796 1.19261 0.92756 0.88520 0.87353 1.83502 1.44286 1.34192 1.49915 1.20822 0.95576 1.01084 1.28758 0.87498 1.24485 0.98930 0.93979 0.96650 1.69623 1.33479 1.11794 1.36727 0.86180 0.83288 0.77198 0.80258 1.19861 1.20841 1.18308 1.21076 0.98277 1.03027 1.02850 1.20774 0.97040 0.92671 0.96033 0.90184 0.90789 0.89996 0.80346 0.90866 0.91059 0.77176 0.86130 0.85936 0.87926 0.86878 0.91052 0.85057 0.87357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.26 36.01 0.37 -0.21 16 2 C 0.09 0.87 7.22 -82.41 -0.59 0.27 16 3 N -0.30 -2.94 12.70 33.67 0.43 -2.51 16 4 N -0.48 -3.29 7.36 30.45 0.22 -3.07 16 5 H 0.44 1.61 8.96 -182.61 -1.64 -0.02 16 6 C 0.08 0.55 11.90 -17.22 -0.20 0.35 16 7 C -0.25 -2.21 5.47 -105.06 -0.57 -2.78 16 8 C 0.20 2.03 5.78 -5.20 -0.03 2.00 16 9 N -0.73 -7.37 5.54 -62.94 -0.35 -7.72 16 10 C 0.54 7.30 6.94 -13.04 -0.09 7.21 16 11 O -0.51 -9.37 12.49 5.17 0.06 -9.31 16 12 C -0.26 -2.99 9.92 -37.51 -0.37 -3.36 16 13 C 0.02 0.27 9.77 -37.19 -0.36 -0.09 16 14 C -0.17 -3.00 4.34 -105.03 -0.46 -3.46 16 15 C 0.00 -0.05 6.77 -39.14 -0.27 -0.31 16 16 C -0.20 -4.23 9.97 -39.46 -0.39 -4.62 16 17 C 0.17 4.22 6.66 -38.89 -0.26 3.97 16 18 O -0.21 -5.86 8.57 0.75 0.01 -5.85 16 19 C -0.39 -11.14 9.94 30.91 0.31 -10.83 16 20 H 0.11 3.14 5.41 -52.49 -0.28 2.85 16 21 C 0.06 1.79 5.49 -17.51 -0.10 1.70 16 22 N -0.88 -25.65 13.96 55.48 0.77 -24.88 16 23 Si 0.91 22.03 28.62 -169.99 -4.86 17.17 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 27 C -0.23 -5.28 9.14 -39.47 -0.36 -5.64 16 28 C -0.05 -0.89 9.78 -39.15 -0.38 -1.28 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.59 7.96 -51.93 -0.41 0.18 16 32 H 0.18 0.69 8.06 -52.48 -0.42 0.27 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.39 3.09 8.44 -40.82 -0.34 2.74 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.10 1.71 7.46 -52.49 -0.39 1.31 16 39 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 40 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.13 3.09 5.62 -52.49 -0.29 2.79 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 364.95 15.07 5.50 5.50 Total: -1.00 -34.90 364.95 -8.29 -43.19 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -6.31 Total: 4.58 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -3.77 Total: -17.10 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 1.08 Total: -38.18 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.07 Total: -15.16 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.86 Total: 17.17 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.90 -8.29 -43.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254942912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.610 kcal (2) G-P(sol) polarization free energy of solvation -34.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds