Wall clock time and date at job start Tue Mar 31 2020 14:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30838 * 125.90083 * 2 1 4 4 N 1.40078 * 108.20698 * 179.97438 * 3 2 1 5 5 H 0.97003 * 126.04128 * 180.02562 * 4 3 2 6 6 C 1.34953 * 107.92546 * 359.75490 * 4 3 2 7 7 C 1.35309 * 107.74332 * 0.39235 * 6 4 3 8 8 C 1.50699 * 126.03752 * 179.86887 * 7 6 4 9 9 N 1.46495 * 109.47309 * 259.68807 * 8 7 6 10 10 C 1.34784 * 120.00463 * 179.97438 * 9 8 7 11 11 O 1.21721 * 119.99310 * 0.02562 * 10 9 8 12 12 C 1.46251 * 120.00564 * 180.02562 * 10 9 8 13 13 C 1.35024 * 120.00158 * 173.07168 * 12 10 9 14 14 C 1.46959 * 119.99972 * 348.87015 * 13 12 10 15 15 C 1.40028 * 120.09993 * 311.82228 * 14 13 12 16 16 C 1.37601 * 119.89483 * 179.69965 * 15 14 13 17 17 C 1.39179 * 120.09980 * 0.59358 * 16 15 14 18 18 O 1.35565 * 119.89401 * 179.69892 * 17 16 15 19 19 C 1.34783 * 116.99961 * 185.61711 * 18 17 16 20 20 H 1.08002 * 119.99929 * 354.91077 * 19 18 17 21 21 C 1.38720 * 120.00304 * 174.90935 * 19 18 17 22 22 N 1.31505 * 120.00192 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99813 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.46942 * 90.00149 * 23 21 19 25 25 H 1.48502 * 109.46680 * 210.00161 * 23 21 19 26 26 H 1.48500 * 109.47106 * 329.99852 * 23 21 19 27 27 C 1.39170 * 120.20438 * 359.67825 * 17 16 15 28 28 C 1.37604 * 120.10275 * 0.02562 * 27 17 16 29 29 H 1.08999 * 109.46937 * 270.02080 * 1 2 3 30 30 H 1.08997 * 109.47036 * 30.02156 * 1 2 3 31 31 H 1.08999 * 109.47430 * 150.02571 * 1 2 3 32 32 H 1.08004 * 126.12248 * 180.23843 * 6 4 3 33 33 H 1.09007 * 109.47242 * 139.69308 * 8 7 6 34 34 H 1.08997 * 109.47354 * 19.69297 * 8 7 6 35 35 H 0.97004 * 120.00082 * 0.02562 * 9 8 7 36 36 H 1.07997 * 119.99348 * 353.06911 * 12 10 9 37 37 H 1.07994 * 119.99517 * 168.59180 * 13 12 10 38 38 H 1.08000 * 120.04897 * 359.97438 * 15 14 13 39 39 H 1.07998 * 119.94517 * 180.26976 * 16 15 14 40 40 H 0.96995 * 120.00248 * 180.02562 * 22 21 19 41 41 H 1.07998 * 119.94881 * 180.02562 * 27 17 16 42 42 H 1.08001 * 120.05290 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 0.0006 5 1 4.3908 1.2079 0.0011 6 6 3.6142 -0.7154 0.0064 7 6 2.3272 -1.1330 0.0006 8 6 1.8599 -2.5657 0.0013 9 7 1.4805 -2.9563 -1.3587 10 6 1.0295 -4.2031 -1.6009 11 8 0.9370 -5.0045 -0.6894 12 6 0.6513 -4.5932 -2.9587 13 6 0.3336 -5.8775 -3.2285 14 6 0.5994 -6.9250 -2.2325 15 6 1.8506 -6.9992 -1.6083 16 6 2.0929 -7.9779 -0.6718 17 6 1.1006 -8.9006 -0.3538 18 8 1.3459 -9.8668 0.5649 19 6 0.3883 -10.7983 0.7438 20 1 -0.5566 -10.7072 0.2286 21 6 0.6163 -11.8739 1.5896 22 7 -0.3179 -12.7830 1.7637 23 14 2.2508 -12.0318 2.4801 24 1 2.1696 -11.3378 3.7904 25 1 2.5586 -13.4680 2.6987 26 1 3.3234 -11.4151 1.6589 27 6 -0.1426 -8.8341 -0.9758 28 6 -0.3959 -7.8552 -1.9091 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 4.4891 -1.3486 0.0120 33 1 0.9987 -2.6668 0.6618 34 1 2.6653 -3.2104 0.3531 35 1 1.5546 -2.3178 -2.0852 36 1 0.6261 -3.8539 -3.7456 37 1 -0.1200 -6.1343 -4.1743 38 1 2.6228 -6.2867 -1.8583 39 1 3.0562 -8.0332 -0.1867 40 1 -0.1586 -13.5349 2.3554 41 1 -0.9097 -9.5520 -0.7256 42 1 -1.3611 -7.8041 -2.3909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254942912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:43 Heat of formation + Delta-G solvation = 38.688931 kcal Electronic energy + Delta-G solvation = -26081.173727 eV Core-core repulsion = 22221.476679 eV Total energy + Delta-G solvation = -3859.697048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.28509 -41.02020 -40.32603 -38.27826 -35.92583 -34.60799 -34.04281 -33.75392 -31.81682 -31.78312 -29.75748 -28.86020 -27.46261 -26.71246 -24.03916 -23.53899 -22.26223 -22.02024 -20.72458 -20.30014 -19.67984 -19.13777 -18.71204 -17.98361 -16.85747 -16.55240 -16.20208 -15.95493 -15.77610 -15.70240 -15.43845 -15.27150 -15.03729 -14.62730 -14.29486 -14.24908 -14.16242 -13.99446 -13.72635 -13.69949 -13.65529 -13.22796 -13.04550 -12.92371 -12.61349 -12.47520 -12.25245 -11.93158 -11.57189 -11.29077 -10.99989 -10.70427 -10.39417 -10.37267 -9.93655 -9.60073 -9.57003 -8.59185 -8.49402 -6.20309 0.07265 0.71830 0.88917 1.09690 1.30385 1.36990 1.51464 1.53308 1.98569 2.28675 2.55761 2.71096 2.81574 3.13577 3.21568 3.66858 3.88829 4.02953 4.10928 4.15327 4.18807 4.26917 4.40964 4.51309 4.57794 4.63276 4.76963 4.82049 4.85593 4.97974 4.99142 5.04053 5.11239 5.23253 5.26960 5.45600 5.48824 5.61392 5.65076 5.72057 5.81307 5.85977 5.93746 6.30531 6.40617 6.68096 6.82634 6.84768 7.54634 7.61425 8.62143 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.002446 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.031409 B =11445.242290 C =12354.742359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.085 3.915 3 N -0.330 5.330 4 N -0.468 5.468 5 H 0.454 0.546 6 C 0.098 3.902 7 C -0.273 4.273 8 C 0.208 3.792 9 N -0.710 5.710 10 C 0.527 3.473 11 O -0.567 6.567 12 C -0.220 4.220 13 C -0.005 4.005 14 C -0.139 4.139 15 C -0.001 4.001 16 C -0.202 4.202 17 C 0.129 3.871 18 O -0.245 6.245 19 C -0.399 4.399 20 H 0.081 0.919 21 C 0.010 3.990 22 N -0.922 5.922 23 Si 0.971 3.029 24 H -0.267 1.267 25 H -0.264 1.264 26 H -0.264 1.264 27 C -0.249 4.249 28 C -0.058 4.058 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.211 0.789 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.411 0.589 36 H 0.171 0.829 37 H 0.165 0.835 38 H 0.130 0.870 39 H 0.119 0.881 40 H 0.285 0.715 41 H 0.107 0.893 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.761 28.518 -10.811 31.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 N -0.155 5.155 4 N -0.176 5.176 5 H 0.301 0.699 6 C -0.052 4.052 7 C -0.285 4.285 8 C 0.083 3.917 9 N -0.363 5.363 10 C 0.317 3.683 11 O -0.448 6.448 12 C -0.240 4.240 13 C -0.024 4.024 14 C -0.139 4.139 15 C -0.020 4.020 16 C -0.222 4.222 17 C 0.079 3.921 18 O -0.153 6.153 19 C -0.476 4.476 20 H 0.099 0.901 21 C -0.189 4.189 22 N -0.563 5.563 23 Si 0.793 3.207 24 H -0.192 1.192 25 H -0.189 1.189 26 H -0.188 1.188 27 C -0.268 4.268 28 C -0.076 4.076 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.228 0.772 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.247 0.753 36 H 0.189 0.811 37 H 0.183 0.817 38 H 0.148 0.852 39 H 0.137 0.863 40 H 0.095 0.905 41 H 0.125 0.875 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.869 29.030 -9.900 31.665 hybrid contribution 0.513 -0.896 0.588 1.188 sum 8.382 28.133 -9.312 30.797 Atomic orbital electron populations 1.20275 0.85815 1.03934 1.03614 1.22590 0.97836 0.90133 0.97670 1.77284 0.87935 1.23256 1.26992 1.46287 1.07172 1.05903 1.58270 0.69911 1.22975 0.99782 0.85389 0.97048 1.19950 0.92889 0.95037 1.20641 1.19162 0.99189 0.89505 0.83808 1.45975 1.66249 1.13218 1.10810 1.19010 0.77043 0.81811 0.90433 1.91008 1.54479 1.51425 1.47843 1.23110 1.07651 0.97812 0.95450 1.22543 0.91446 0.91085 0.97323 1.18908 0.94413 0.98463 1.02156 1.20756 0.96261 0.93206 0.91728 1.20258 0.98514 0.98917 1.04475 1.19749 0.94426 0.89260 0.88631 1.83444 1.43979 1.35329 1.52514 1.20749 0.95412 1.02260 1.29143 0.90146 1.25290 1.02520 0.93565 0.97484 1.69703 1.35408 1.12801 1.38390 0.85221 0.78690 0.77968 0.78842 1.19218 1.18874 1.18809 1.21112 0.97431 1.04017 1.04239 1.21124 0.99028 0.92168 0.95285 0.90123 0.90143 0.89887 0.77237 0.92616 0.91690 0.75324 0.81134 0.81743 0.85235 0.86326 0.90536 0.87497 0.84248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.26 71.24 0.73 -0.31 16 2 C 0.08 1.41 7.22 43.10 0.31 1.72 16 3 N -0.33 -5.86 12.70 -47.38 -0.60 -6.47 16 4 N -0.47 -5.16 7.36 -57.59 -0.42 -5.59 16 5 H 0.45 2.05 8.96 -213.33 -1.91 0.14 16 6 C 0.10 1.01 11.90 83.54 0.99 2.00 16 7 C -0.27 -4.06 5.47 -20.15 -0.11 -4.17 16 8 C 0.21 3.77 5.78 85.63 0.50 4.26 16 9 N -0.71 -11.73 5.54 -471.24 -2.61 -14.35 16 10 C 0.53 12.34 6.94 86.32 0.60 12.94 16 11 O -0.57 -19.66 12.49 -4.42 -0.06 -19.72 16 12 C -0.22 -3.82 9.92 23.61 0.23 -3.59 16 13 C 0.00 -0.10 9.77 23.82 0.23 0.13 16 14 C -0.14 -4.53 4.34 -20.13 -0.09 -4.62 16 15 C 0.00 -0.05 6.77 22.55 0.15 0.10 16 16 C -0.20 -8.77 9.97 22.35 0.22 -8.55 16 17 C 0.13 6.57 6.66 22.72 0.15 6.72 16 18 O -0.25 -14.23 8.57 -20.22 -0.17 -14.41 16 19 C -0.40 -24.68 9.94 67.94 0.68 -24.01 16 20 H 0.08 5.20 5.41 -2.91 -0.02 5.18 16 21 C 0.01 0.58 5.49 84.86 0.47 1.05 16 22 N -0.92 -56.63 13.96 21.62 0.30 -56.33 16 23 Si 0.97 47.20 28.62 68.60 1.96 49.16 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.26 -12.85 7.11 99.48 0.71 -12.14 16 27 C -0.25 -11.87 9.14 22.34 0.20 -11.66 16 28 C -0.06 -2.18 9.78 22.55 0.22 -1.96 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.05 7.96 -2.39 -0.02 1.03 16 32 H 0.21 0.72 8.06 -2.91 -0.02 0.70 16 33 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.41 4.49 8.44 -92.71 -0.78 3.70 16 36 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 37 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 38 H 0.13 3.88 7.46 -2.91 -0.02 3.86 16 39 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 40 H 0.28 15.99 8.31 -92.71 -0.77 15.22 16 41 H 0.11 5.53 5.62 -2.91 -0.02 5.51 16 42 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -82.59 364.95 2.28 -80.31 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -1.61 Total: 17.30 kcal Atomic # 6 Polarization: -35.42 SS G_CDS: 5.49 Total: -29.93 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -3.34 Total: -82.73 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.23 Total: -34.12 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.96 Total: 49.16 kcal Total: -82.59 2.28 -80.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254942912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.996 kcal (2) G-P(sol) polarization free energy of solvation -82.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds