Wall clock time and date at job start Tue Mar 31 2020 15:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30833 * 125.83338 * 2 1 4 4 N 1.40066 * 108.37587 * 180.02562 * 3 2 1 5 5 H 0.97005 * 126.04922 * 180.02562 * 4 3 2 6 6 C 1.35833 * 107.89636 * 359.73259 * 4 3 2 7 7 C 1.50693 * 126.22124 * 180.26707 * 6 4 3 8 8 C 1.35778 * 107.55549 * 0.42846 * 6 4 3 9 9 N 1.40688 * 126.08530 * 179.83754 * 8 6 4 10 10 C 1.34772 * 120.00226 * 243.20520 * 9 8 6 11 11 O 1.21747 * 120.00079 * 354.44650 * 10 9 8 12 12 C 1.46245 * 120.00057 * 174.43705 * 10 9 8 13 13 C 1.35018 * 120.00023 * 187.56428 * 12 10 9 14 14 C 1.46965 * 120.00172 * 15.26226 * 13 12 10 15 15 C 1.40022 * 120.10180 * 220.09735 * 14 13 12 16 16 C 1.37603 * 119.89491 * 180.02562 * 15 14 13 17 17 C 1.39170 * 120.10555 * 0.25833 * 16 15 14 18 18 O 1.35566 * 119.90273 * 179.74269 * 17 16 15 19 19 C 1.34786 * 116.99875 * 6.06710 * 18 17 16 20 20 H 1.07999 * 119.99692 * 5.47485 * 19 18 17 21 21 C 1.38714 * 119.99820 * 185.46843 * 19 18 17 22 22 N 1.31506 * 120.00297 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99648 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46931 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46861 * 120.00327 * 23 21 19 26 26 H 1.48500 * 109.47061 * 240.00080 * 23 21 19 27 27 C 1.39182 * 120.19541 * 359.48848 * 17 16 15 28 28 C 1.37590 * 120.10920 * 0.50776 * 27 17 16 29 29 H 1.08995 * 109.47418 * 266.30846 * 1 2 3 30 30 H 1.09006 * 109.47086 * 26.30854 * 1 2 3 31 31 H 1.09001 * 109.47189 * 146.30279 * 1 2 3 32 32 H 1.09002 * 109.47670 * 270.18787 * 7 6 4 33 33 H 1.08997 * 109.47470 * 30.19417 * 7 6 4 34 34 H 1.09000 * 109.47113 * 150.18735 * 7 6 4 35 35 H 0.97003 * 119.99632 * 63.20786 * 9 8 6 36 36 H 1.07999 * 119.99856 * 7.57150 * 12 10 9 37 37 H 1.08003 * 120.00047 * 195.27096 * 13 12 10 38 38 H 1.08002 * 120.05124 * 0.02562 * 15 14 13 39 39 H 1.08001 * 119.94231 * 179.97438 * 16 15 14 40 40 H 0.97002 * 120.00060 * 179.97438 * 22 21 19 41 41 H 1.08006 * 119.94209 * 180.25535 * 27 17 16 42 42 H 1.08000 * 120.05658 * 179.76500 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2729 1.0607 0.0000 4 7 3.6090 0.6405 -0.0006 5 1 4.3889 1.2174 -0.0004 6 6 3.6194 -0.7178 0.0051 7 6 4.8419 -1.5989 0.0123 8 6 2.3281 -1.1373 -0.0006 9 7 1.8912 -2.4746 -0.0008 10 6 1.1869 -2.9533 -1.0453 11 8 0.8416 -2.2046 -1.9410 12 6 0.8376 -4.3723 -1.1029 13 6 0.2679 -4.8827 -2.2156 14 6 0.3009 -4.1225 -3.4729 15 6 -0.8223 -4.0985 -4.3087 16 6 -0.7865 -3.3858 -5.4853 17 6 0.3653 -2.6939 -5.8476 18 8 0.3978 -1.9973 -7.0101 19 6 -0.7542 -1.9120 -7.7047 20 1 -1.6672 -2.3100 -7.2871 21 6 -0.7670 -1.3128 -8.9557 22 7 0.3448 -0.8285 -9.4643 23 14 -2.3638 -1.1939 -9.9179 24 1 -3.4626 -1.8097 -9.1315 25 1 -2.6800 0.2337 -10.1776 26 1 -2.2178 -1.9115 -11.2098 27 6 1.4823 -2.7106 -5.0173 28 6 1.4558 -3.4204 -3.8389 29 1 -0.3634 -0.0662 1.0255 30 1 -0.3633 0.9213 -0.4555 31 1 -0.3633 -0.8550 -0.5702 32 1 5.1417 -1.8129 -1.0136 33 1 5.6545 -1.0886 0.5293 34 1 4.6138 -2.5325 0.5264 35 1 2.0970 -3.0521 0.7510 36 1 1.0353 -5.0119 -0.2555 37 1 -0.2122 -5.8495 -2.1816 38 1 -1.7152 -4.6386 -4.0304 39 1 -1.6522 -3.3672 -6.1307 40 1 0.3359 -0.4098 -10.3392 41 1 2.3727 -2.1688 -5.3005 42 1 2.3243 -3.4359 -3.1972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255477029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:40 Heat of formation + Delta-G solvation = 62.694110 kcal Electronic energy + Delta-G solvation = -27004.490919 eV Core-core repulsion = 23145.834814 eV Total energy + Delta-G solvation = -3858.656105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.44253 -39.50840 -38.62420 -36.51007 -34.45792 -33.42064 -33.00423 -32.12775 -30.70640 -30.11191 -28.27281 -27.64355 -26.81234 -25.41778 -23.46889 -21.81182 -21.22268 -20.49729 -19.71229 -19.25085 -17.95023 -17.63550 -17.21172 -16.57166 -15.75213 -15.18290 -14.70907 -14.60699 -14.49633 -14.22775 -13.89518 -13.61073 -13.45034 -13.39273 -13.25740 -13.03311 -13.01222 -12.60685 -12.45566 -12.25345 -12.15806 -12.08439 -11.69642 -11.34987 -11.00792 -10.94380 -10.68979 -10.58002 -10.39929 -9.59910 -9.46741 -9.32009 -9.25146 -9.20167 -8.68987 -8.19620 -7.92150 -6.85479 -6.45879 -4.01051 1.21441 1.70902 2.43442 2.59390 2.66956 2.73740 3.14720 3.15174 3.20800 3.50821 3.66190 3.97636 4.46993 4.70638 4.75148 4.86992 5.10982 5.15493 5.22918 5.24476 5.33819 5.34698 5.57925 5.60503 5.67168 5.74504 5.78644 5.85928 5.92336 6.03705 6.26341 6.32368 6.39861 6.45578 6.61492 6.78993 6.94090 7.04498 7.13707 7.18173 7.36979 7.45927 7.50979 7.59649 7.71900 7.92939 8.01079 8.61405 8.99990 9.72037 10.72057 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014138 B = 0.003144 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.960149 B = 8904.716213 C = 9730.120544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.100 3.900 3 N -0.290 5.290 4 N -0.476 5.476 5 H 0.440 0.560 6 C 0.078 3.922 7 C -0.088 4.088 8 C 0.001 3.999 9 N -0.658 5.658 10 C 0.541 3.459 11 O -0.497 6.497 12 C -0.271 4.271 13 C 0.032 3.968 14 C -0.189 4.189 15 C -0.040 4.040 16 C -0.249 4.249 17 C 0.172 3.828 18 O -0.172 6.172 19 C -0.388 4.388 20 H 0.094 0.906 21 C 0.039 3.961 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.276 1.276 27 C -0.202 4.202 28 C 0.010 3.990 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.399 0.601 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.126 0.874 40 H 0.270 0.730 41 H 0.112 0.888 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.371 -5.735 21.371 22.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.068 4.068 3 N -0.113 5.113 4 N -0.186 5.186 5 H 0.285 0.715 6 C -0.052 4.052 7 C -0.147 4.147 8 C -0.103 4.103 9 N -0.308 5.308 10 C 0.332 3.668 11 O -0.371 6.371 12 C -0.292 4.292 13 C 0.012 3.988 14 C -0.190 4.190 15 C -0.058 4.058 16 C -0.268 4.268 17 C 0.117 3.883 18 O -0.074 6.074 19 C -0.465 4.465 20 H 0.112 0.888 21 C -0.166 4.166 22 N -0.493 5.493 23 Si 0.766 3.234 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.221 4.221 28 C -0.009 4.009 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.235 0.765 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.125 0.875 39 H 0.144 0.856 40 H 0.080 0.920 41 H 0.130 0.870 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.382 -3.693 20.328 21.350 hybrid contribution -0.211 -0.718 -0.011 0.749 sum 5.172 -4.411 20.317 21.424 Atomic orbital electron populations 1.20264 0.86519 1.04509 1.02217 1.22460 0.97271 0.89677 0.97433 1.77312 0.86302 1.21937 1.25779 1.46007 1.07370 1.04303 1.60910 0.71528 1.21055 0.96561 0.85363 1.02241 1.20399 0.92533 0.97987 1.03746 1.16912 0.89928 0.85584 1.17881 1.42753 1.57210 1.08697 1.22179 1.18589 0.77876 0.89201 0.81138 1.91002 1.50878 1.59171 1.36088 1.22493 1.12205 0.93962 1.00580 1.22323 0.88694 0.96634 0.91146 1.18300 0.96297 1.08151 0.96292 1.20771 0.96053 0.96292 0.92704 1.20967 0.99933 1.05958 0.99987 1.19555 0.93096 0.88817 0.86855 1.83921 1.35457 1.60287 1.27773 1.21448 0.85538 1.39841 0.99630 0.88829 1.25334 0.99100 0.96148 0.96005 1.70033 1.26547 1.35297 1.17473 0.85631 0.79974 0.78469 0.79286 1.18982 1.20085 1.20109 1.19998 0.98335 1.07373 0.96409 1.20456 0.95914 0.91596 0.92912 0.91087 0.90940 0.89296 0.89857 0.91075 0.89787 0.76546 0.86028 0.86043 0.87544 0.85641 0.91993 0.87000 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.30 36.00 0.37 -0.68 16 2 C 0.10 1.50 6.89 -82.26 -0.57 0.93 16 3 N -0.29 -4.34 12.69 33.75 0.43 -3.91 16 4 N -0.48 -5.48 7.40 33.71 0.25 -5.23 16 5 H 0.44 3.52 8.96 -182.62 -1.64 1.88 16 6 C 0.08 0.86 7.26 -81.71 -0.59 0.27 16 7 C -0.09 -0.62 10.38 36.00 0.37 -0.25 16 8 C 0.00 0.01 5.90 -83.91 -0.50 -0.49 16 9 N -0.66 -7.43 5.36 -11.34 -0.06 -7.49 16 10 C 0.54 7.73 6.04 -13.05 -0.08 7.65 16 11 O -0.50 -9.47 10.57 5.15 0.05 -9.42 16 12 C -0.27 -3.21 9.84 -37.51 -0.37 -3.58 16 13 C 0.03 0.43 9.80 -37.19 -0.36 0.06 16 14 C -0.19 -3.44 4.57 -105.02 -0.48 -3.92 16 15 C -0.04 -0.76 9.78 -39.14 -0.38 -1.15 16 16 C -0.25 -5.68 9.11 -39.47 -0.36 -6.04 16 17 C 0.17 4.40 6.66 -38.88 -0.26 4.14 16 18 O -0.17 -5.11 9.74 0.74 0.01 -5.10 16 19 C -0.39 -11.14 9.43 30.91 0.29 -10.85 16 20 H 0.09 2.50 5.28 -52.49 -0.28 2.22 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.61 13.67 55.48 0.76 -24.85 16 23 Si 0.94 20.86 29.55 -169.99 -5.02 15.83 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 27 C -0.20 -4.68 9.97 -39.47 -0.39 -5.07 16 28 C 0.01 0.19 6.71 -39.15 -0.26 -0.07 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 1.37 5.95 -51.93 -0.31 1.06 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.40 3.05 8.81 -40.82 -0.36 2.69 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 38 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.13 2.84 5.70 -52.49 -0.30 2.54 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.11 2.56 8.06 -52.48 -0.42 2.14 16 42 H 0.10 1.83 6.91 -52.49 -0.36 1.47 16 LS Contribution 361.32 15.07 5.44 5.44 Total: -1.00 -36.37 361.32 -7.99 -44.36 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.18 Total: 8.42 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -3.66 Total: -18.06 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 1.38 Total: -41.48 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.06 Total: -14.52 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.37 -7.99 -44.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255477029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.051 kcal (2) G-P(sol) polarization free energy of solvation -36.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds