Wall clock time and date at job start Tue Mar 31 2020 15:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30833 * 125.83338 * 2 1 4 4 N 1.40066 * 108.37587 * 180.02562 * 3 2 1 5 5 H 0.97005 * 126.04922 * 180.02562 * 4 3 2 6 6 C 1.35833 * 107.89636 * 359.73259 * 4 3 2 7 7 C 1.50693 * 126.22124 * 180.26707 * 6 4 3 8 8 C 1.35778 * 107.55549 * 0.42846 * 6 4 3 9 9 N 1.40688 * 126.08530 * 179.83754 * 8 6 4 10 10 C 1.34772 * 120.00226 * 243.20520 * 9 8 6 11 11 O 1.21747 * 120.00079 * 354.44650 * 10 9 8 12 12 C 1.46245 * 120.00057 * 174.43705 * 10 9 8 13 13 C 1.35018 * 120.00023 * 187.56428 * 12 10 9 14 14 C 1.46965 * 120.00172 * 15.26226 * 13 12 10 15 15 C 1.40022 * 120.10180 * 220.09735 * 14 13 12 16 16 C 1.37603 * 119.89491 * 180.02562 * 15 14 13 17 17 C 1.39170 * 120.10555 * 0.25833 * 16 15 14 18 18 O 1.35566 * 119.90273 * 179.74269 * 17 16 15 19 19 C 1.34786 * 116.99875 * 6.06710 * 18 17 16 20 20 H 1.07999 * 119.99692 * 5.47485 * 19 18 17 21 21 C 1.38714 * 119.99820 * 185.46843 * 19 18 17 22 22 N 1.31506 * 120.00297 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99648 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46931 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46861 * 120.00327 * 23 21 19 26 26 H 1.48500 * 109.47061 * 240.00080 * 23 21 19 27 27 C 1.39182 * 120.19541 * 359.48848 * 17 16 15 28 28 C 1.37590 * 120.10920 * 0.50776 * 27 17 16 29 29 H 1.08995 * 109.47418 * 266.30846 * 1 2 3 30 30 H 1.09006 * 109.47086 * 26.30854 * 1 2 3 31 31 H 1.09001 * 109.47189 * 146.30279 * 1 2 3 32 32 H 1.09002 * 109.47670 * 270.18787 * 7 6 4 33 33 H 1.08997 * 109.47470 * 30.19417 * 7 6 4 34 34 H 1.09000 * 109.47113 * 150.18735 * 7 6 4 35 35 H 0.97003 * 119.99632 * 63.20786 * 9 8 6 36 36 H 1.07999 * 119.99856 * 7.57150 * 12 10 9 37 37 H 1.08003 * 120.00047 * 195.27096 * 13 12 10 38 38 H 1.08002 * 120.05124 * 0.02562 * 15 14 13 39 39 H 1.08001 * 119.94231 * 179.97438 * 16 15 14 40 40 H 0.97002 * 120.00060 * 179.97438 * 22 21 19 41 41 H 1.08006 * 119.94209 * 180.25535 * 27 17 16 42 42 H 1.08000 * 120.05658 * 179.76500 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2729 1.0607 0.0000 4 7 3.6090 0.6405 -0.0006 5 1 4.3889 1.2174 -0.0004 6 6 3.6194 -0.7178 0.0051 7 6 4.8419 -1.5989 0.0123 8 6 2.3281 -1.1373 -0.0006 9 7 1.8912 -2.4746 -0.0008 10 6 1.1869 -2.9533 -1.0453 11 8 0.8416 -2.2046 -1.9410 12 6 0.8376 -4.3723 -1.1029 13 6 0.2679 -4.8827 -2.2156 14 6 0.3009 -4.1225 -3.4729 15 6 -0.8223 -4.0985 -4.3087 16 6 -0.7865 -3.3858 -5.4853 17 6 0.3653 -2.6939 -5.8476 18 8 0.3978 -1.9973 -7.0101 19 6 -0.7542 -1.9120 -7.7047 20 1 -1.6672 -2.3100 -7.2871 21 6 -0.7670 -1.3128 -8.9557 22 7 0.3448 -0.8285 -9.4643 23 14 -2.3638 -1.1939 -9.9179 24 1 -3.4626 -1.8097 -9.1315 25 1 -2.6800 0.2337 -10.1776 26 1 -2.2178 -1.9115 -11.2098 27 6 1.4823 -2.7106 -5.0173 28 6 1.4558 -3.4204 -3.8389 29 1 -0.3634 -0.0662 1.0255 30 1 -0.3633 0.9213 -0.4555 31 1 -0.3633 -0.8550 -0.5702 32 1 5.1417 -1.8129 -1.0136 33 1 5.6545 -1.0886 0.5293 34 1 4.6138 -2.5325 0.5264 35 1 2.0970 -3.0521 0.7510 36 1 1.0353 -5.0119 -0.2555 37 1 -0.2122 -5.8495 -2.1816 38 1 -1.7152 -4.6386 -4.0304 39 1 -1.6522 -3.3672 -6.1307 40 1 0.3359 -0.4098 -10.3392 41 1 2.3727 -2.1688 -5.3005 42 1 2.3243 -3.4359 -3.1972 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255477029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:39 Heat of formation + Delta-G solvation = 35.993589 kcal Electronic energy + Delta-G solvation = -27005.648741 eV Core-core repulsion = 23145.834814 eV Total energy + Delta-G solvation = -3859.813926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.42403 -40.94089 -40.19204 -38.17503 -35.58987 -34.58964 -34.32848 -33.87302 -31.81052 -31.63975 -29.67815 -28.76511 -27.78946 -27.33991 -24.73198 -23.51394 -22.69959 -21.47378 -20.83491 -20.44348 -19.77101 -18.87850 -18.61309 -18.00286 -16.79076 -16.40166 -16.35987 -16.00784 -15.88600 -15.68523 -15.48059 -15.05786 -14.71264 -14.59334 -14.42376 -14.24709 -14.16593 -13.86192 -13.71983 -13.55436 -13.29770 -13.23649 -13.06087 -12.96825 -12.62839 -12.35887 -12.20437 -12.10103 -11.94732 -11.23286 -10.95577 -10.72316 -10.51123 -10.32249 -10.24402 -9.63056 -9.14309 -8.51633 -8.49664 -6.16291 0.00232 0.72767 0.77180 1.15928 1.32981 1.44482 1.52432 1.56547 1.81801 2.16593 2.51327 2.59710 2.87589 3.24229 3.51436 3.64912 3.84118 4.05565 4.10043 4.14427 4.18382 4.25212 4.45584 4.56553 4.64528 4.66251 4.69431 4.78221 4.80580 4.85865 5.05607 5.06424 5.10365 5.11494 5.26468 5.30960 5.34784 5.49058 5.69922 5.74218 5.87861 5.93939 6.02156 6.27056 6.36527 6.61764 6.79523 6.94844 7.57499 7.77547 8.74264 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014138 B = 0.003144 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.960149 B = 8904.716213 C = 9730.120544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.077 3.923 3 N -0.328 5.328 4 N -0.470 5.470 5 H 0.453 0.547 6 C 0.093 3.907 7 C -0.087 4.087 8 C -0.029 4.029 9 N -0.633 5.633 10 C 0.530 3.470 11 O -0.553 6.553 12 C -0.227 4.227 13 C 0.006 3.994 14 C -0.156 4.156 15 C -0.046 4.046 16 C -0.257 4.257 17 C 0.126 3.874 18 O -0.233 6.233 19 C -0.414 4.414 20 H 0.102 0.898 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.022 2.978 24 H -0.250 1.250 25 H -0.269 1.269 26 H -0.264 1.264 27 C -0.222 4.222 28 C 0.012 3.988 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.421 0.579 36 H 0.180 0.820 37 H 0.171 0.829 38 H 0.150 0.850 39 H 0.118 0.882 40 H 0.273 0.727 41 H 0.096 0.904 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.130 -8.950 25.571 27.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 N -0.153 5.153 4 N -0.181 5.181 5 H 0.301 0.699 6 C -0.038 4.038 7 C -0.145 4.145 8 C -0.133 4.133 9 N -0.284 5.284 10 C 0.321 3.679 11 O -0.431 6.431 12 C -0.247 4.247 13 C -0.013 4.013 14 C -0.157 4.157 15 C -0.064 4.064 16 C -0.277 4.277 17 C 0.075 3.925 18 O -0.139 6.139 19 C -0.490 4.490 20 H 0.119 0.881 21 C -0.221 4.221 22 N -0.559 5.559 23 Si 0.840 3.160 24 H -0.173 1.173 25 H -0.194 1.194 26 H -0.189 1.189 27 C -0.241 4.241 28 C -0.006 4.006 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.261 0.739 36 H 0.197 0.803 37 H 0.188 0.812 38 H 0.167 0.833 39 H 0.136 0.864 40 H 0.082 0.918 41 H 0.114 0.886 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.175 -6.949 24.647 26.125 hybrid contribution 0.076 0.159 -0.710 0.731 sum 5.250 -6.790 23.937 25.429 Atomic orbital electron populations 1.20205 0.86542 1.03022 1.03260 1.22735 0.97789 0.90658 0.97913 1.77227 0.87879 1.22839 1.27345 1.46108 1.06901 1.05085 1.60010 0.69942 1.21685 0.97387 0.85308 0.99461 1.20594 0.91411 0.98309 1.04223 1.17109 0.90518 0.85957 1.19725 1.42510 1.55647 1.08191 1.22058 1.19245 0.77529 0.90210 0.80918 1.91019 1.53112 1.60703 1.38273 1.22987 1.07323 0.92635 1.01754 1.22566 0.91138 0.98457 0.89108 1.18897 0.94386 1.04839 0.97557 1.21226 0.98098 0.95713 0.91384 1.21101 0.98682 1.06323 1.01547 1.20036 0.95133 0.90619 0.86720 1.83882 1.36288 1.63765 1.30009 1.21907 0.86029 1.40684 1.00344 0.88118 1.26671 1.03351 0.95388 0.96737 1.70182 1.29462 1.37930 1.18373 0.84498 0.75035 0.78786 0.77650 1.17331 1.19402 1.18922 1.20171 0.97505 1.08657 0.97801 1.20683 0.97556 0.90918 0.91458 0.88635 0.92114 0.91059 0.90123 0.88375 0.87649 0.73950 0.80319 0.81221 0.83270 0.86389 0.91779 0.88620 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.97 10.30 71.23 0.73 -1.24 16 2 C 0.08 2.26 6.89 43.20 0.30 2.56 16 3 N -0.33 -9.85 12.69 -47.14 -0.60 -10.45 16 4 N -0.47 -10.27 7.40 -47.28 -0.35 -10.62 16 5 H 0.45 6.68 8.96 -213.34 -1.91 4.77 16 6 C 0.09 1.84 7.26 41.37 0.30 2.14 16 7 C -0.09 -0.89 10.38 71.23 0.74 -0.15 16 8 C -0.03 -0.71 5.90 37.64 0.22 -0.49 16 9 N -0.63 -11.81 5.36 -307.99 -1.65 -13.46 16 10 C 0.53 13.09 6.04 86.32 0.52 13.61 16 11 O -0.55 -20.31 10.57 -4.50 -0.05 -20.36 16 12 C -0.23 -3.85 9.84 23.61 0.23 -3.62 16 13 C 0.01 0.14 9.80 23.82 0.23 0.37 16 14 C -0.16 -5.23 4.57 -20.12 -0.09 -5.32 16 15 C -0.05 -1.70 9.78 22.55 0.22 -1.48 16 16 C -0.26 -12.16 9.11 22.34 0.20 -11.95 16 17 C 0.13 6.91 6.66 22.72 0.15 7.06 16 18 O -0.23 -15.14 9.74 -20.27 -0.20 -15.34 16 19 C -0.41 -25.55 9.43 67.93 0.64 -24.90 16 20 H 0.10 5.74 5.28 -2.91 -0.02 5.73 16 21 C -0.02 -1.44 5.49 84.86 0.47 -0.97 16 22 N -0.92 -59.01 13.67 21.62 0.30 -58.71 16 23 Si 1.02 44.72 29.55 68.60 2.03 46.75 16 24 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 27 C -0.22 -10.93 9.97 22.34 0.22 -10.71 16 28 C 0.01 0.47 6.71 22.55 0.15 0.63 16 29 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.07 2.20 5.95 -2.39 -0.01 2.19 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.42 4.10 8.81 -92.71 -0.82 3.29 16 36 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 39 H 0.12 5.61 5.70 -2.91 -0.02 5.60 16 40 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 41 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 42 H 0.12 4.14 6.91 -2.91 -0.02 4.12 16 Total: -1.00 -91.18 361.32 3.09 -88.09 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -1.64 Total: 28.56 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: 5.25 Total: -34.47 kcal Atomic # 7 Polarization: -90.93 SS G_CDS: -2.30 Total: -93.23 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -0.25 Total: -35.69 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -91.18 3.09 -88.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255477029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.082 kcal (2) G-P(sol) polarization free energy of solvation -91.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds