Wall clock time and date at job start Tue Mar 31 2020 15:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35777 * 126.21971 * 2 1 4 4 N 1.40686 * 126.08444 * 359.97438 * 3 2 1 5 5 C 1.34783 * 120.00106 * 179.97438 * 4 3 2 6 6 O 1.21746 * 119.99790 * 0.02562 * 5 4 3 7 7 C 1.46236 * 119.99882 * 179.97438 * 5 4 3 8 8 C 1.35025 * 119.99715 * 173.21565 * 7 5 4 9 9 C 1.46958 * 120.00162 * 348.67628 * 8 7 5 10 10 C 1.40024 * 120.09913 * 316.40869 * 9 8 7 11 11 C 1.37599 * 119.89734 * 179.69533 * 10 9 8 12 12 C 1.39178 * 120.10039 * 0.60214 * 11 10 9 13 13 O 1.35573 * 119.89878 * 179.69592 * 12 11 10 14 14 C 1.34784 * 116.99672 * 174.33505 * 13 12 11 15 15 H 1.07992 * 120.00503 * 5.06387 * 14 13 12 16 16 C 1.38718 * 119.99677 * 185.06293 * 14 13 12 17 17 N 1.31509 * 119.99848 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00119 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46506 * 90.00444 * 18 16 14 20 20 H 1.48498 * 109.47223 * 210.00249 * 18 16 14 21 21 H 1.48497 * 109.47014 * 330.00523 * 18 16 14 22 22 C 1.39171 * 120.20058 * 359.67341 * 12 11 10 23 23 C 1.37600 * 120.10692 * 0.02562 * 22 12 11 24 24 C 1.40273 * 107.83139 * 180.02562 * 3 2 1 25 25 N 1.30818 * 108.33971 * 0.02562 * 24 3 2 26 26 N 1.35828 * 126.22238 * 179.69564 * 2 1 3 27 27 C 1.46507 * 126.05361 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47236 * 89.99894 * 1 2 3 29 29 H 1.09002 * 109.46571 * 209.99635 * 1 2 3 30 30 H 1.08995 * 109.46809 * 329.99841 * 1 2 3 31 31 H 0.96999 * 120.00054 * 359.97438 * 4 3 2 32 32 H 1.08003 * 120.00517 * 353.20953 * 7 5 4 33 33 H 1.08003 * 120.00087 * 168.68117 * 8 7 5 34 34 H 1.07996 * 120.05256 * 359.97438 * 10 9 8 35 35 H 1.07996 * 119.95262 * 180.27102 * 11 10 9 36 36 H 0.97003 * 119.99833 * 180.02562 * 17 16 14 37 37 H 1.08008 * 119.94649 * 180.02562 * 22 12 11 38 38 H 1.07998 * 120.05646 * 180.02562 * 23 22 12 39 39 H 1.08000 * 125.83084 * 179.97438 * 24 3 2 40 40 H 1.08992 * 109.47307 * 89.99950 * 27 26 2 41 41 H 1.09005 * 109.47062 * 210.00390 * 27 26 2 42 42 H 1.08997 * 109.46647 * 329.99902 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3093 1.0954 0.0000 4 7 1.8817 2.4357 -0.0005 5 6 2.7888 3.4325 0.0001 6 8 3.9783 3.1731 0.0006 7 6 2.3443 4.8257 -0.0010 8 6 3.2451 5.8219 0.1377 9 6 4.6257 5.5139 0.5364 10 6 4.8715 4.5946 1.5636 11 6 6.1659 4.3047 1.9293 12 6 7.2297 4.9329 1.2884 13 8 8.5032 4.6487 1.6563 14 6 9.4897 5.1993 0.9211 15 1 9.2505 5.8988 0.1339 16 6 10.8123 4.8675 1.1758 17 7 11.7748 5.4051 0.4589 18 14 11.2262 3.6582 2.5381 19 1 11.2461 2.2795 1.9867 20 1 12.5605 3.9852 3.1018 21 1 10.2009 3.7485 3.6085 22 6 6.9900 5.8516 0.2709 23 6 5.6991 6.1432 -0.1058 24 6 3.6404 0.6529 -0.0006 25 7 3.6393 -0.6553 -0.0015 26 7 2.3097 -1.0957 0.0058 27 6 1.8636 -2.4913 0.0138 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3632 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 0.9340 2.6424 -0.0013 32 1 1.2954 5.0578 -0.1129 33 1 2.9511 6.8451 -0.0443 34 1 4.0465 4.1105 2.0650 35 1 6.3566 3.5925 2.7185 36 1 12.6997 5.1727 0.6368 37 1 7.8186 6.3364 -0.2240 38 1 5.5140 6.8559 -0.8958 39 1 4.5166 1.2844 -0.0011 40 1 1.7526 -2.8431 -1.0118 41 1 2.6010 -3.1054 0.5308 42 1 0.9055 -2.5634 0.5284 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255660940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:00 Heat of formation + Delta-G solvation = 79.625402 kcal Electronic energy + Delta-G solvation = -26675.435926 eV Core-core repulsion = 22817.514017 eV Total energy + Delta-G solvation = -3857.921909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.44261 -39.68951 -38.81144 -36.68893 -34.75810 -33.46978 -33.05608 -32.27971 -31.37407 -30.19415 -28.40916 -26.94045 -26.55060 -25.31032 -23.43991 -21.98834 -21.60201 -20.70703 -20.08991 -18.97244 -17.80824 -17.31312 -17.14084 -16.65718 -15.91448 -15.79839 -14.89339 -14.75423 -14.68815 -14.09214 -13.87842 -13.83835 -13.67035 -13.50296 -13.38994 -13.21115 -12.92568 -12.85684 -12.65003 -12.54697 -12.37191 -12.23849 -12.07359 -11.44963 -10.93438 -10.76210 -10.74332 -10.66997 -10.60223 -10.12154 -9.52669 -9.45484 -9.27762 -9.21096 -8.74329 -8.05457 -7.60850 -6.97418 -6.40225 -4.03895 1.08811 1.72805 2.32378 2.34643 2.58400 2.84661 3.25638 3.29686 3.30569 3.44379 3.66182 4.26905 4.41482 4.44808 4.63209 4.69235 4.87214 4.90162 4.92500 5.08793 5.14632 5.15454 5.16480 5.24362 5.39663 5.52844 5.59457 5.68692 5.76621 5.78392 6.19432 6.22225 6.27987 6.35916 6.51139 6.67740 6.85775 6.93490 6.97070 7.19258 7.32496 7.39617 7.51684 7.68827 7.73385 7.86427 8.08107 8.42941 8.95100 9.59417 10.67074 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013306 B = 0.003159 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.882690 B = 8860.156534 C =10566.929442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.030 3.970 3 C 0.013 3.987 4 N -0.647 5.647 5 C 0.541 3.459 6 O -0.501 6.501 7 C -0.264 4.264 8 C 0.032 3.968 9 C -0.184 4.184 10 C 0.009 3.991 11 C -0.202 4.202 12 C 0.178 3.822 13 O -0.212 6.212 14 C -0.387 4.387 15 H 0.108 0.892 16 C 0.064 3.936 17 N -0.877 5.877 18 Si 0.905 3.095 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.238 4.238 23 C -0.042 4.042 24 C 0.058 3.942 25 N -0.286 5.286 26 N -0.378 5.378 27 C 0.109 3.891 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.403 0.597 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.280 0.720 37 H 0.132 0.868 38 H 0.109 0.891 39 H 0.210 0.790 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.793 -8.162 -0.777 28.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 C -0.092 4.092 4 N -0.293 5.293 5 C 0.332 3.668 6 O -0.377 6.377 7 C -0.285 4.285 8 C 0.013 3.987 9 C -0.185 4.185 10 C -0.009 4.009 11 C -0.221 4.221 12 C 0.125 3.875 13 O -0.116 6.116 14 C -0.463 4.463 15 H 0.126 0.874 16 C -0.140 4.140 17 N -0.514 5.514 18 Si 0.730 3.270 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.183 1.183 22 C -0.257 4.257 23 C -0.060 4.060 24 C -0.129 4.129 25 N -0.108 5.108 26 N -0.165 5.165 27 C -0.033 4.033 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.238 0.762 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.121 0.879 35 H 0.132 0.868 36 H 0.090 0.910 37 H 0.150 0.850 38 H 0.127 0.873 39 H 0.226 0.774 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.887 -9.619 -0.631 26.689 hybrid contribution -0.758 0.311 0.260 0.860 sum -25.646 -9.308 -0.371 27.285 Atomic orbital electron populations 1.20319 0.87342 1.03504 1.02984 1.20381 0.93883 0.86738 1.08799 1.17456 0.92897 0.84142 1.14707 1.42902 1.09850 1.02487 1.74019 1.18529 0.85723 0.85764 0.76779 1.90874 1.15741 1.83630 1.47404 1.22474 0.99818 0.91471 1.14780 1.22362 0.92144 0.97682 0.86538 1.18348 0.91628 1.05341 1.03160 1.20454 0.94817 0.91805 0.93840 1.20011 0.90821 1.05676 1.05605 1.19277 0.84680 0.91915 0.91660 1.83509 1.11636 1.64892 1.51551 1.20831 0.84287 1.25394 1.15744 0.87436 1.24490 0.94016 0.97507 0.97962 1.69627 1.00322 1.42474 1.39008 0.86188 0.77891 0.80878 0.82038 1.19758 1.20774 1.18284 1.21070 0.97243 1.04456 1.02925 1.20793 0.91759 0.96550 0.96901 1.24646 0.97936 0.91147 0.99192 1.77461 0.96308 1.12864 1.24137 1.48196 1.03831 1.05354 1.59084 1.21742 1.00814 0.77686 1.03061 0.90466 0.91059 0.90280 0.76225 0.85831 0.85728 0.87855 0.86808 0.90999 0.85045 0.87312 0.77353 0.91041 0.89318 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 9.95 36.01 0.36 -0.11 16 2 C 0.03 0.32 6.98 -81.70 -0.57 -0.25 16 3 C 0.01 0.17 6.86 -83.91 -0.58 -0.41 16 4 N -0.65 -7.23 5.46 -11.34 -0.06 -7.29 16 5 C 0.54 7.50 6.74 -13.04 -0.09 7.41 16 6 O -0.50 -9.02 9.33 5.15 0.05 -8.97 16 7 C -0.26 -2.99 9.90 -37.51 -0.37 -3.36 16 8 C 0.03 0.41 9.80 -37.19 -0.36 0.05 16 9 C -0.18 -3.18 4.54 -105.03 -0.48 -3.66 16 10 C 0.01 0.17 6.59 -39.15 -0.26 -0.08 16 11 C -0.20 -4.33 9.97 -39.47 -0.39 -4.72 16 12 C 0.18 4.31 6.66 -38.89 -0.26 4.05 16 13 O -0.21 -5.79 8.57 0.72 0.01 -5.79 16 14 C -0.39 -11.18 9.94 30.91 0.31 -10.87 16 15 H 0.11 3.16 5.41 -52.49 -0.28 2.87 16 16 C 0.06 1.83 5.49 -17.51 -0.10 1.73 16 17 N -0.88 -25.73 13.96 55.48 0.77 -24.96 16 18 Si 0.90 22.26 28.62 -169.99 -4.86 17.40 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 22 C -0.24 -5.33 9.14 -39.47 -0.36 -5.70 16 23 C -0.04 -0.78 9.78 -39.15 -0.38 -1.16 16 24 C 0.06 0.94 10.83 -17.22 -0.19 0.76 16 25 N -0.29 -4.53 12.56 30.71 0.39 -4.14 16 26 N -0.38 -4.47 4.04 -63.55 -0.26 -4.73 16 27 C 0.11 0.75 11.29 59.85 0.68 1.42 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.29 7.11 -51.93 -0.37 -0.08 16 30 H 0.08 0.34 7.61 -51.93 -0.40 -0.06 16 31 H 0.40 2.93 8.06 -40.82 -0.33 2.61 16 32 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.10 1.75 7.02 -52.49 -0.37 1.38 16 35 H 0.11 2.34 8.06 -52.49 -0.42 1.91 16 36 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.13 3.07 5.62 -52.48 -0.29 2.78 16 38 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.21 3.83 5.91 -52.49 -0.31 3.52 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.33 7.08 -51.93 -0.37 -0.03 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -35.22 357.14 -6.44 -41.66 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.81 Total: 6.34 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -3.04 Total: -14.89 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.84 Total: -41.12 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.05 Total: -14.76 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.86 Total: 17.40 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.22 -6.44 -41.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255660940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.285 kcal (2) G-P(sol) polarization free energy of solvation -35.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds