Wall clock time and date at job start Tue Mar 31 2020 15:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35777 * 126.21971 * 2 1 4 4 N 1.40686 * 126.08444 * 359.97438 * 3 2 1 5 5 C 1.34783 * 120.00106 * 179.97438 * 4 3 2 6 6 O 1.21746 * 119.99790 * 0.02562 * 5 4 3 7 7 C 1.46236 * 119.99882 * 179.97438 * 5 4 3 8 8 C 1.35025 * 119.99715 * 173.21565 * 7 5 4 9 9 C 1.46958 * 120.00162 * 348.67628 * 8 7 5 10 10 C 1.40024 * 120.09913 * 316.40869 * 9 8 7 11 11 C 1.37599 * 119.89734 * 179.69533 * 10 9 8 12 12 C 1.39178 * 120.10039 * 0.60214 * 11 10 9 13 13 O 1.35573 * 119.89878 * 179.69592 * 12 11 10 14 14 C 1.34784 * 116.99672 * 174.33505 * 13 12 11 15 15 H 1.07992 * 120.00503 * 5.06387 * 14 13 12 16 16 C 1.38718 * 119.99677 * 185.06293 * 14 13 12 17 17 N 1.31509 * 119.99848 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00119 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46506 * 90.00444 * 18 16 14 20 20 H 1.48498 * 109.47223 * 210.00249 * 18 16 14 21 21 H 1.48497 * 109.47014 * 330.00523 * 18 16 14 22 22 C 1.39171 * 120.20058 * 359.67341 * 12 11 10 23 23 C 1.37600 * 120.10692 * 0.02562 * 22 12 11 24 24 C 1.40273 * 107.83139 * 180.02562 * 3 2 1 25 25 N 1.30818 * 108.33971 * 0.02562 * 24 3 2 26 26 N 1.35828 * 126.22238 * 179.69564 * 2 1 3 27 27 C 1.46507 * 126.05361 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.47236 * 89.99894 * 1 2 3 29 29 H 1.09002 * 109.46571 * 209.99635 * 1 2 3 30 30 H 1.08995 * 109.46809 * 329.99841 * 1 2 3 31 31 H 0.96999 * 120.00054 * 359.97438 * 4 3 2 32 32 H 1.08003 * 120.00517 * 353.20953 * 7 5 4 33 33 H 1.08003 * 120.00087 * 168.68117 * 8 7 5 34 34 H 1.07996 * 120.05256 * 359.97438 * 10 9 8 35 35 H 1.07996 * 119.95262 * 180.27102 * 11 10 9 36 36 H 0.97003 * 119.99833 * 180.02562 * 17 16 14 37 37 H 1.08008 * 119.94649 * 180.02562 * 22 12 11 38 38 H 1.07998 * 120.05646 * 180.02562 * 23 22 12 39 39 H 1.08000 * 125.83084 * 179.97438 * 24 3 2 40 40 H 1.08992 * 109.47307 * 89.99950 * 27 26 2 41 41 H 1.09005 * 109.47062 * 210.00390 * 27 26 2 42 42 H 1.08997 * 109.46647 * 329.99902 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3093 1.0954 0.0000 4 7 1.8817 2.4357 -0.0005 5 6 2.7888 3.4325 0.0001 6 8 3.9783 3.1731 0.0006 7 6 2.3443 4.8257 -0.0010 8 6 3.2451 5.8219 0.1377 9 6 4.6257 5.5139 0.5364 10 6 4.8715 4.5946 1.5636 11 6 6.1659 4.3047 1.9293 12 6 7.2297 4.9329 1.2884 13 8 8.5032 4.6487 1.6563 14 6 9.4897 5.1993 0.9211 15 1 9.2505 5.8988 0.1339 16 6 10.8123 4.8675 1.1758 17 7 11.7748 5.4051 0.4589 18 14 11.2262 3.6582 2.5381 19 1 11.2461 2.2795 1.9867 20 1 12.5605 3.9852 3.1018 21 1 10.2009 3.7485 3.6085 22 6 6.9900 5.8516 0.2709 23 6 5.6991 6.1432 -0.1058 24 6 3.6404 0.6529 -0.0006 25 7 3.6393 -0.6553 -0.0015 26 7 2.3097 -1.0957 0.0058 27 6 1.8636 -2.4913 0.0138 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3632 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 0.9340 2.6424 -0.0013 32 1 1.2954 5.0578 -0.1129 33 1 2.9511 6.8451 -0.0443 34 1 4.0465 4.1105 2.0650 35 1 6.3566 3.5925 2.7185 36 1 12.6997 5.1727 0.6368 37 1 7.8186 6.3364 -0.2240 38 1 5.5140 6.8559 -0.8958 39 1 4.5166 1.2844 -0.0011 40 1 1.7526 -2.8431 -1.0118 41 1 2.6010 -3.1054 0.5308 42 1 0.9055 -2.5634 0.5284 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255660940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:59 Heat of formation + Delta-G solvation = 54.522289 kcal Electronic energy + Delta-G solvation = -26676.524478 eV Core-core repulsion = 22817.514017 eV Total energy + Delta-G solvation = -3859.010462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.40914 -41.05365 -40.34768 -38.29807 -35.83044 -34.66848 -34.31375 -33.99884 -32.15264 -31.83932 -29.84938 -27.80667 -27.47466 -27.10334 -24.66106 -23.63637 -22.90904 -21.94099 -21.02683 -20.22710 -19.63402 -19.08410 -18.11221 -17.84390 -16.77558 -16.73129 -16.53360 -16.19411 -15.95945 -15.68086 -15.55004 -15.13522 -15.06410 -14.63621 -14.37779 -14.25541 -14.11441 -13.95485 -13.85886 -13.69371 -13.54623 -13.35306 -13.10326 -12.93902 -12.65427 -12.49341 -12.27350 -11.96062 -11.72541 -11.63925 -11.32741 -11.02617 -10.64377 -10.41103 -10.20969 -9.65747 -8.63397 -8.53255 -8.52794 -6.23182 -0.05640 0.68416 0.79261 1.09838 1.26810 1.33408 1.48272 1.55071 1.73442 2.25640 2.37079 2.61881 2.79846 3.05676 3.24147 3.71380 3.78721 3.97659 4.06522 4.11083 4.14174 4.17229 4.40051 4.46671 4.53737 4.55773 4.61496 4.68294 4.78783 4.80666 4.95203 4.98732 5.09794 5.19969 5.23677 5.25752 5.42026 5.46174 5.68970 5.79194 5.82718 5.85511 5.91099 6.13681 6.27618 6.59694 6.77096 6.81809 7.44459 7.58617 8.58973 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.013306 B = 0.003159 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.882690 B = 8860.156534 C =10566.929442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.058 3.942 3 C -0.018 4.018 4 N -0.624 5.624 5 C 0.524 3.476 6 O -0.553 6.553 7 C -0.221 4.221 8 C 0.006 3.994 9 C -0.149 4.149 10 C 0.012 3.988 11 C -0.210 4.210 12 C 0.133 3.867 13 O -0.246 6.246 14 C -0.400 4.400 15 H 0.083 0.917 16 C 0.012 3.988 17 N -0.921 5.921 18 Si 0.967 3.033 19 H -0.270 1.270 20 H -0.261 1.261 21 H -0.265 1.265 22 C -0.252 4.252 23 C -0.051 4.051 24 C 0.028 3.972 25 N -0.332 5.332 26 N -0.375 5.375 27 C 0.095 3.905 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.426 0.574 32 H 0.182 0.818 33 H 0.172 0.828 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.285 0.715 37 H 0.108 0.892 38 H 0.144 0.856 39 H 0.175 0.825 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.513 -8.997 -0.727 34.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 C -0.123 4.123 4 N -0.271 5.271 5 C 0.316 3.684 6 O -0.432 6.432 7 C -0.241 4.241 8 C -0.013 4.013 9 C -0.150 4.150 10 C -0.007 4.007 11 C -0.229 4.229 12 C 0.084 3.916 13 O -0.153 6.153 14 C -0.476 4.476 15 H 0.101 0.899 16 C -0.187 4.187 17 N -0.562 5.562 18 Si 0.790 3.210 19 H -0.195 1.195 20 H -0.185 1.185 21 H -0.190 1.190 22 C -0.272 4.272 23 C -0.069 4.069 24 C -0.158 4.158 25 N -0.156 5.156 26 N -0.161 5.161 27 C -0.045 4.045 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.265 0.735 32 H 0.199 0.801 33 H 0.189 0.811 34 H 0.143 0.857 35 H 0.130 0.870 36 H 0.095 0.905 37 H 0.126 0.874 38 H 0.162 0.838 39 H 0.192 0.808 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -31.706 -10.469 -0.587 33.395 hybrid contribution 0.672 0.393 0.097 0.785 sum -31.034 -10.076 -0.490 32.633 Atomic orbital electron populations 1.20606 0.82902 1.05769 1.04876 1.21226 0.96099 0.85238 1.04658 1.17563 0.91957 0.85712 1.17054 1.42654 1.10683 1.01311 1.72429 1.19228 0.85430 0.87414 0.76378 1.90904 1.18119 1.84488 1.49670 1.22960 1.02167 0.89000 1.09960 1.22593 0.89177 1.00576 0.89003 1.18925 0.94253 1.01617 1.00210 1.20726 0.93930 0.91864 0.94141 1.20224 0.91562 1.05590 1.05526 1.19743 0.84327 0.93867 0.93699 1.83455 1.12401 1.66845 1.52619 1.20764 0.85441 1.25503 1.15868 0.89945 1.25253 0.93726 0.99337 1.00343 1.69701 1.00785 1.44608 1.41074 0.85271 0.78127 0.78578 0.79045 1.19496 1.18514 1.18977 1.21112 0.98590 1.04559 1.02899 1.21165 0.90445 0.97511 0.97814 1.24279 0.98748 0.91544 1.01190 1.77359 0.99216 1.12872 1.26117 1.48695 1.02745 1.07448 1.57197 1.22200 1.02389 0.75179 1.04690 0.88495 0.88699 0.88199 0.73522 0.80065 0.81088 0.85739 0.86962 0.90490 0.87383 0.83819 0.80817 0.89457 0.89621 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 9.95 71.24 0.71 0.27 16 2 C 0.06 1.04 6.98 41.37 0.29 1.33 16 3 C -0.02 -0.45 6.86 37.64 0.26 -0.19 16 4 N -0.62 -11.61 5.46 -307.98 -1.68 -13.30 16 5 C 0.52 12.88 6.74 86.32 0.58 13.46 16 6 O -0.55 -19.76 9.33 -4.50 -0.04 -19.80 16 7 C -0.22 -3.65 9.90 23.61 0.23 -3.41 16 8 C 0.01 0.12 9.80 23.82 0.23 0.35 16 9 C -0.15 -4.89 4.54 -20.13 -0.09 -4.98 16 10 C 0.01 0.43 6.59 22.55 0.15 0.58 16 11 C -0.21 -9.48 9.97 22.34 0.22 -9.26 16 12 C 0.13 6.95 6.66 22.72 0.15 7.11 16 13 O -0.25 -14.62 8.57 -20.33 -0.17 -14.80 16 14 C -0.40 -25.15 9.94 67.93 0.68 -24.47 16 15 H 0.08 5.39 5.41 -2.91 -0.02 5.38 16 16 C 0.01 0.73 5.49 84.86 0.47 1.20 16 17 N -0.92 -57.44 13.96 21.62 0.30 -57.14 16 18 Si 0.97 48.60 28.62 68.60 1.96 50.57 16 19 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 21 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 22 C -0.25 -12.14 9.14 22.34 0.20 -11.93 16 23 C -0.05 -1.92 9.78 22.55 0.22 -1.70 16 24 C 0.03 0.94 10.83 85.34 0.92 1.87 16 25 N -0.33 -10.78 12.56 -56.77 -0.71 -11.49 16 26 N -0.38 -8.11 4.04 -354.98 -1.43 -9.54 16 27 C 0.09 1.01 11.29 127.77 1.44 2.45 16 28 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.09 0.13 7.11 -2.39 -0.02 0.12 16 30 H 0.10 0.18 7.61 -2.39 -0.02 0.16 16 31 H 0.43 3.72 8.06 -92.71 -0.75 2.97 16 32 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 33 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.12 4.03 7.02 -2.91 -0.02 4.01 16 35 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 36 H 0.29 16.27 8.31 -92.71 -0.77 15.50 16 37 H 0.11 5.62 5.62 -2.91 -0.02 5.60 16 38 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 39 H 0.18 7.04 5.91 -2.91 -0.02 7.02 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.12 0.36 7.08 -2.39 -0.02 0.35 16 Total: -1.00 -89.33 357.14 5.22 -84.11 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.33 Total: 18.73 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 6.67 Total: -27.35 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -3.53 Total: -91.47 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.22 Total: -34.60 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 1.96 Total: 50.57 kcal Total: -89.33 5.22 -84.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255660940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.635 kcal (2) G-P(sol) polarization free energy of solvation -89.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds