Wall clock time and date at job start Tue Mar 31 2020 16:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.46784 * 2 1 4 4 N 1.31796 * 119.03599 * 90.00441 * 3 2 1 5 5 C 1.32263 * 120.88968 * 179.97438 * 4 3 2 6 6 C 1.39238 * 119.01849 * 0.02562 * 5 4 3 7 7 N 1.39976 * 120.86954 * 179.97438 * 6 5 4 8 8 C 1.34779 * 120.00137 * 25.70315 * 7 6 5 9 9 O 1.21287 * 120.00069 * 5.67397 * 8 7 6 10 10 C 1.50698 * 120.00084 * 185.67414 * 8 7 6 11 11 C 1.50702 * 109.47082 * 179.97438 * 10 8 7 12 12 C 1.38302 * 119.92800 * 90.00233 * 11 10 8 13 13 C 1.38101 * 120.06683 * 179.97438 * 12 11 10 14 14 C 1.38874 * 119.92969 * 0.02731 * 13 12 11 15 15 O 1.35749 * 120.06876 * 180.02562 * 14 13 12 16 16 C 1.34831 * 117.00016 * 5.23799 * 15 14 13 17 17 H 1.08002 * 120.00144 * 354.97608 * 16 15 14 18 18 C 1.38652 * 120.00206 * 174.97673 * 16 15 14 19 19 N 1.31557 * 120.00056 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00255 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47273 * 89.99887 * 20 18 16 22 22 H 1.48505 * 109.47437 * 209.99975 * 20 18 16 23 23 H 1.48504 * 109.47245 * 330.00420 * 20 18 16 24 24 C 1.38882 * 119.86601 * 0.26744 * 14 13 12 25 25 C 1.38103 * 119.92442 * 359.45505 * 24 14 13 26 26 C 1.39230 * 118.25769 * 0.26536 * 6 5 4 27 27 N 1.31790 * 119.03767 * 270.02061 * 3 2 1 28 28 H 1.09004 * 109.46650 * 300.00082 * 1 2 3 29 29 H 1.08998 * 109.47516 * 59.99692 * 1 2 3 30 30 H 1.08994 * 109.47099 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46715 * 240.00450 * 2 1 3 32 32 H 1.08998 * 109.47516 * 120.00308 * 2 1 3 33 33 H 1.08002 * 120.49136 * 180.02562 * 5 4 3 34 34 H 0.96997 * 120.00016 * 205.69206 * 7 6 5 35 35 H 1.09003 * 109.46605 * 59.99840 * 10 8 7 36 36 H 1.08998 * 109.47297 * 300.00424 * 10 8 7 37 37 H 1.07995 * 119.96577 * 0.02562 * 12 11 10 38 38 H 1.07998 * 120.03568 * 180.02562 * 13 12 11 39 39 H 0.97000 * 120.00639 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.03804 * 179.72498 * 24 14 13 41 41 H 1.08000 * 119.96129 * 180.26991 * 25 24 14 42 42 H 1.08003 * 120.49547 * 179.71070 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2456 2.0240 1.1523 5 6 2.6867 3.2701 1.1951 6 6 2.9247 3.9438 0.0000 7 7 3.3912 5.2635 0.0001 8 6 4.0931 5.7301 1.0518 9 8 4.4093 4.9799 1.9508 10 6 4.4852 7.1840 1.1107 11 6 5.2564 7.4454 2.3788 12 6 6.6329 7.3122 2.3891 13 6 7.3426 7.5515 3.5494 14 6 6.6724 7.9256 4.7068 15 8 7.3671 8.1620 5.8488 16 6 8.7123 8.1223 5.7663 17 1 9.1883 7.8303 4.8418 18 6 9.4847 8.4563 6.8682 19 7 8.9051 8.8116 7.9945 20 14 11.3484 8.4020 6.7537 21 1 11.8558 9.7248 6.3085 22 1 11.9170 8.0767 8.0864 23 1 11.7541 7.3614 5.7749 24 6 5.2894 8.0525 4.6948 25 6 4.5861 7.8174 3.5298 26 6 2.6806 3.2724 -1.1951 27 7 2.2451 2.0241 -1.1522 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8935 -0.5139 0.8899 33 1 2.8596 3.7580 2.1430 34 1 3.2094 5.8422 -0.7569 35 1 3.5881 7.8030 1.0973 36 1 5.1076 7.4277 0.2497 37 1 7.1535 7.0216 1.4886 38 1 8.4175 7.4477 3.5568 39 1 9.4453 9.0449 8.7656 40 1 4.7650 8.3390 5.5944 41 1 3.5110 7.9202 3.5187 42 1 2.8484 3.7620 -2.1430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269508510.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:14 Heat of formation + Delta-G solvation = 9.154434 kcal Electronic energy + Delta-G solvation = -25732.230094 eV Core-core repulsion = 21871.252334 eV Total energy + Delta-G solvation = -3860.977759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.61689 -40.00778 -38.89379 -36.68840 -35.69519 -33.94119 -33.80881 -32.53529 -31.62406 -30.19834 -29.68591 -26.83659 -25.37054 -25.06462 -24.66089 -22.33786 -22.01616 -21.30500 -20.35431 -18.46774 -18.01806 -17.68579 -17.06900 -16.93405 -16.64805 -15.51485 -15.17629 -14.78360 -14.54895 -14.38635 -14.37818 -14.08829 -14.02356 -13.73532 -13.54168 -13.50285 -12.82597 -12.74943 -12.62846 -12.16517 -11.98780 -11.60354 -11.51428 -11.38910 -11.30594 -11.23290 -11.06069 -10.90152 -10.81905 -10.65808 -10.44404 -10.07188 -9.42088 -9.35606 -8.84344 -8.62668 -8.19282 -7.21325 -6.46469 -4.05094 0.57102 0.83885 2.13896 2.21601 2.40516 2.73567 3.12466 3.12846 3.17862 3.51306 3.71762 3.94181 3.95641 4.20782 4.38289 4.57994 4.72555 4.85223 4.94209 5.00938 5.07228 5.11617 5.15318 5.26689 5.28891 5.51471 5.53211 5.57148 5.67103 5.73353 5.76577 5.79591 5.91479 6.18358 6.28859 6.37667 6.65463 6.74224 6.86082 6.95748 7.04237 7.19924 7.31926 7.42265 7.79667 7.84619 7.90297 7.98527 8.99033 9.68732 10.71402 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021220 B = 0.002087 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.219157 B =13410.130368 C =13834.654346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.052 4.052 3 C 0.288 3.712 4 N -0.493 5.493 5 C 0.143 3.857 6 C 0.048 3.952 7 N -0.670 5.670 8 C 0.508 3.492 9 O -0.495 6.495 10 C -0.074 4.074 11 C -0.179 4.179 12 C -0.054 4.054 13 C -0.233 4.233 14 C 0.159 3.841 15 O -0.176 6.176 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.192 4.192 25 C -0.058 4.058 26 C 0.116 3.884 27 N -0.497 5.497 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.187 0.813 34 H 0.414 0.586 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.270 0.730 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.968 -8.312 -20.063 25.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 C 0.021 3.979 4 N -0.206 5.206 5 C -0.026 4.026 6 C -0.052 4.052 7 N -0.316 5.316 8 C 0.297 3.703 9 O -0.367 6.367 10 C -0.114 4.114 11 C -0.180 4.180 12 C -0.072 4.072 13 C -0.252 4.252 14 C 0.104 3.896 15 O -0.079 6.079 16 C -0.468 4.468 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.199 1.199 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.211 4.211 25 C -0.076 4.076 26 C -0.053 4.053 27 N -0.211 5.211 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.203 0.797 34 H 0.250 0.750 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -14.012 -9.598 -18.868 25.386 hybrid contribution 1.311 1.232 -0.554 1.883 sum -12.701 -8.366 -19.422 24.668 Atomic orbital electron populations 1.21692 0.93698 1.02405 1.02340 1.20299 0.96647 0.88064 1.04137 1.23172 0.93588 0.97693 0.83489 1.68339 1.12472 1.09700 1.30117 1.23725 0.90398 0.89747 0.98754 1.19690 1.00619 0.87958 0.96933 1.43651 1.54771 1.10260 1.22932 1.21548 0.76209 0.91763 0.80783 1.90741 1.51091 1.58124 1.36728 1.20398 1.01532 0.90384 0.99106 1.18556 0.93349 1.12271 0.93848 1.20505 0.92996 0.96834 0.96913 1.21107 1.00689 1.10142 0.93307 1.19404 0.91681 0.91911 0.86562 1.83977 1.20273 1.76595 1.27049 1.21335 0.77999 1.47473 0.99981 0.89032 1.25300 1.00534 0.96225 0.94486 1.70037 1.36246 1.41666 1.01653 0.85705 0.80583 0.78923 0.78184 1.19861 1.20227 1.19189 1.20161 0.91706 1.10507 0.98721 1.20393 0.97921 0.97525 0.91765 1.22989 0.95393 0.90012 0.96934 1.68160 1.13224 1.09126 1.30546 0.92288 0.92448 0.91504 0.89363 0.89196 0.79682 0.74972 0.88249 0.88436 0.87809 0.85536 0.91981 0.86463 0.87307 0.81379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.90 37.16 0.37 -0.67 16 2 C -0.05 -0.45 6.37 -27.88 -0.18 -0.63 16 3 C 0.29 3.36 6.89 -157.20 -1.08 2.27 16 4 N -0.49 -6.57 10.32 -10.58 -0.11 -6.68 16 5 C 0.14 1.87 9.99 -16.99 -0.17 1.70 16 6 C 0.05 0.51 6.46 -83.40 -0.54 -0.03 16 7 N -0.67 -5.56 5.38 -9.68 -0.05 -5.61 16 8 C 0.51 5.98 7.64 -10.99 -0.08 5.90 16 9 O -0.50 -8.22 13.33 5.55 0.07 -8.15 16 10 C -0.07 -0.78 5.83 -29.03 -0.17 -0.94 16 11 C -0.18 -2.87 4.38 -104.58 -0.46 -3.33 16 12 C -0.05 -0.98 9.69 -39.61 -0.38 -1.36 16 13 C -0.23 -5.09 9.17 -39.40 -0.36 -5.45 16 14 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 15 O -0.18 -5.05 9.76 0.05 0.00 -5.05 16 16 C -0.39 -10.99 9.49 30.89 0.29 -10.70 16 17 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 20 Si 0.94 20.59 29.55 -169.99 -5.02 15.56 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 C -0.19 -4.05 9.99 -39.39 -0.39 -4.45 16 25 C -0.06 -1.00 9.69 -39.61 -0.38 -1.39 16 26 C 0.12 1.06 11.24 -16.99 -0.19 0.87 16 27 N -0.50 -5.49 10.32 -10.58 -0.11 -5.60 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.19 2.66 5.99 -52.49 -0.31 2.35 16 34 H 0.41 1.70 8.80 -40.82 -0.36 1.34 16 35 H 0.10 0.77 8.08 -51.93 -0.42 0.35 16 36 H 0.10 0.77 8.08 -51.93 -0.42 0.35 16 37 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 365.57 15.07 5.51 5.51 Total: -1.00 -35.13 365.57 -8.06 -43.20 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.02 Total: 5.00 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -4.09 Total: -13.61 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.49 Total: -42.45 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.07 Total: -13.20 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.13 -8.06 -43.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269508510.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.350 kcal (2) G-P(sol) polarization free energy of solvation -35.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds