Wall clock time and date at job start Tue Mar 31 2020 14:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38068 * 120.33214 * 2 1 4 4 N 1.31938 * 120.84986 * 179.72222 * 3 2 1 5 5 C 1.32427 * 121.62655 * 0.51916 * 4 3 2 6 6 N 1.39002 * 119.70568 * 179.75457 * 5 4 3 7 7 C 1.46499 * 120.00090 * 5.19658 * 6 5 4 8 8 H 1.08994 * 109.47073 * 35.00502 * 7 6 5 9 9 C 1.53009 * 109.46860 * 155.00215 * 7 6 5 10 10 C 1.50708 * 109.46914 * 295.00000 * 9 7 6 11 11 H 1.08002 * 119.99909 * 0.02562 * 10 9 7 12 12 C 1.37870 * 119.99772 * 180.02562 * 10 9 7 13 13 N 1.31516 * 120.00026 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99893 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47107 * 89.99615 * 14 12 10 16 16 H 1.48501 * 109.46999 * 209.99853 * 14 12 10 17 17 H 1.48497 * 109.46831 * 329.99435 * 14 12 10 18 18 C 1.50695 * 109.47393 * 274.99937 * 7 6 5 19 19 C 1.38234 * 119.99981 * 140.00290 * 18 7 6 20 20 C 1.38230 * 120.00120 * 179.97438 * 19 18 7 21 21 C 1.38236 * 120.00121 * 359.97438 * 20 19 18 22 22 C 1.38229 * 119.99773 * 0.06721 * 21 20 19 23 23 C 1.38233 * 120.00368 * 359.89434 * 22 21 20 24 24 C 1.39095 * 120.58861 * 359.48085 * 5 4 3 25 25 N 1.35495 * 120.45150 * 180.27498 * 24 5 4 26 26 O 1.21798 * 119.99929 * 218.26831 * 25 24 5 27 27 O 1.21802 * 119.99859 * 38.27420 * 25 24 5 28 28 C 1.38345 * 119.09389 * 0.24979 * 24 5 4 29 29 H 1.08998 * 109.47331 * 270.02263 * 1 2 3 30 30 H 1.08995 * 109.47511 * 30.02608 * 1 2 3 31 31 H 1.09003 * 109.47250 * 150.02851 * 1 2 3 32 32 H 1.08000 * 119.57173 * 359.94674 * 3 2 1 33 33 H 0.96999 * 120.00234 * 185.20121 * 6 5 4 34 34 H 1.08991 * 109.47568 * 54.99958 * 9 7 6 35 35 H 1.09000 * 109.46900 * 175.00394 * 9 7 6 36 36 H 0.97002 * 119.99714 * 180.02562 * 13 12 10 37 37 H 1.08003 * 120.00177 * 359.97144 * 19 18 7 38 38 H 1.08005 * 120.00175 * 179.71898 * 20 19 18 39 39 H 1.07995 * 119.99839 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.00180 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00744 * 180.11023 * 23 22 21 42 42 H 1.08002 * 120.74132 * 179.97438 * 28 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1917 0.0000 4 7 3.5236 1.2036 0.0055 5 6 4.2282 0.0824 0.0010 6 7 5.6170 0.1415 0.0019 7 6 6.2950 1.4346 0.1227 8 1 5.7189 2.0869 0.7790 9 6 7.6920 1.2249 0.7104 10 6 7.5713 0.7047 2.1197 11 1 6.5957 0.5397 2.5527 12 6 8.7062 0.4394 2.8561 13 7 9.8942 0.6398 2.3286 14 14 8.5566 -0.2060 4.6028 15 1 8.5244 -1.6905 4.5808 16 1 9.7218 0.2521 5.4013 17 1 7.3047 0.3073 5.2145 18 6 6.4129 2.0692 -1.2390 19 6 6.2126 3.4288 -1.3876 20 6 6.3213 4.0110 -2.6366 21 6 6.6309 3.2337 -3.7370 22 6 6.8304 1.8740 -3.5885 23 6 6.7225 1.2918 -2.3394 24 6 3.5910 -1.1541 0.0010 25 7 4.3147 -2.2996 0.0020 26 8 3.9403 -3.2570 -0.6512 27 8 5.3396 -2.3718 0.6561 28 6 2.2083 -1.1982 0.0006 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3634 -0.8903 -0.5134 32 1 1.6627 2.1261 -0.0009 33 1 6.1372 -0.6733 -0.0775 34 1 8.2375 0.5033 0.1023 35 1 8.2291 2.1733 0.7180 36 1 10.6927 0.4528 2.8467 37 1 5.9710 4.0362 -0.5279 38 1 6.1603 5.0726 -2.7534 39 1 6.7154 3.6886 -4.7128 40 1 7.0719 1.2666 -4.4482 41 1 6.8801 0.2297 -2.2231 42 1 1.6861 -2.1436 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269709687.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:08 Heat of formation + Delta-G solvation = 65.876956 kcal Electronic energy + Delta-G solvation = -27881.448184 eV Core-core repulsion = 24022.930098 eV Total energy + Delta-G solvation = -3858.518086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.75248 -40.31156 -39.11399 -36.78664 -35.97333 -33.82698 -33.36408 -32.47636 -30.90704 -30.53940 -28.91288 -27.25166 -26.34859 -25.02521 -23.17776 -22.42526 -22.01675 -21.87966 -20.12519 -18.81386 -18.62922 -18.11704 -17.53037 -16.86033 -16.21859 -16.12559 -15.05997 -14.97888 -14.79826 -14.56989 -14.41917 -13.73463 -13.56309 -13.47322 -13.11309 -13.03051 -12.84050 -12.65503 -12.41463 -12.14700 -11.56092 -11.27245 -11.17918 -11.10660 -10.98605 -10.80683 -10.76157 -10.74768 -10.53673 -10.33114 -10.19844 -9.75480 -9.70674 -9.26361 -8.64041 -8.44630 -8.31541 -7.83713 -6.07143 -4.10642 -0.00658 1.12278 1.46815 1.64892 1.68827 2.28311 3.17888 3.32959 3.39146 3.41948 3.45994 4.09434 4.18501 4.36332 4.43571 4.58389 4.69876 4.80630 5.14679 5.15710 5.24269 5.28029 5.30721 5.34666 5.36849 5.40558 5.63354 5.77462 5.81591 5.84332 5.95635 6.12355 6.21234 6.29567 6.42198 6.72861 6.74286 6.78586 6.93079 7.06427 7.25702 7.28288 7.44509 7.56718 7.87751 7.96541 8.03368 8.22323 8.93208 9.55033 11.03496 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.007754 B = 0.005852 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3610.124822 B = 4783.417850 C = 6898.268410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.224 4.224 3 C 0.217 3.783 4 N -0.521 5.521 5 C 0.474 3.526 6 N -0.649 5.649 7 C 0.186 3.814 8 H 0.096 0.904 9 C 0.023 3.977 10 C -0.520 4.520 11 H 0.057 0.943 12 C 0.064 3.936 13 N -0.892 5.892 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.072 4.072 19 C -0.103 4.103 20 C -0.122 4.122 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.111 4.111 24 C -0.202 4.202 25 N 0.087 4.913 26 O -0.201 6.201 27 O -0.187 6.187 28 C 0.039 3.961 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.170 0.830 33 H 0.422 0.578 34 H 0.025 0.975 35 H 0.040 0.960 36 H 0.262 0.738 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.429 3.386 -9.088 19.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.230 4.230 3 C 0.052 3.948 4 N -0.239 5.239 5 C 0.230 3.770 6 N -0.276 5.276 7 C 0.082 3.918 8 H 0.114 0.886 9 C -0.015 4.015 10 C -0.558 4.558 11 H 0.075 0.925 12 C -0.138 4.138 13 N -0.530 5.530 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.074 4.074 19 C -0.122 4.122 20 C -0.140 4.140 21 C -0.150 4.150 22 C -0.141 4.141 23 C -0.129 4.129 24 C -0.304 4.304 25 N 0.590 4.410 26 O -0.403 6.403 27 O -0.388 6.388 28 C 0.013 3.987 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.187 0.813 33 H 0.265 0.735 34 H 0.044 0.956 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.130 0.870 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.820 4.804 -9.006 18.827 hybrid contribution 0.034 -1.784 0.912 2.004 sum -15.787 3.021 -8.093 17.996 Atomic orbital electron populations 1.20538 0.89134 1.03091 1.02466 1.20502 0.98064 0.92560 1.11833 1.22904 0.88578 0.98096 0.85251 1.67698 1.08315 1.26332 1.21528 1.18139 0.87128 0.86573 0.85155 1.45744 1.00482 1.12660 1.68739 1.20551 0.97684 0.82094 0.91458 0.88648 1.19441 0.87317 0.98652 0.96040 1.21040 0.92727 1.44224 0.97785 0.92452 1.24940 0.95262 0.95262 0.98360 1.69952 0.97424 1.48351 1.37293 0.86573 0.77457 0.79510 0.84397 1.20328 1.21281 1.20009 1.20461 0.97001 0.94090 0.95805 1.20966 0.99608 0.94304 0.97286 1.21050 1.00686 0.99395 0.92865 1.21013 1.01553 0.94038 0.98431 1.21042 1.00832 0.95123 0.97067 1.20918 0.99815 0.99665 0.92512 1.18874 0.94212 0.86548 1.30730 1.39267 1.01255 1.01660 0.98804 1.94516 1.74419 1.30313 1.41090 1.94642 1.14149 1.89635 1.40414 1.21088 0.89812 1.00225 0.87623 0.91251 0.91085 0.91473 0.81259 0.73476 0.95631 0.94213 0.92825 0.85985 0.86469 0.86720 0.86670 0.87013 0.83107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 10.03 36.01 0.36 -0.25 16 2 C -0.22 -2.29 5.90 -104.46 -0.62 -2.91 16 3 C 0.22 2.43 10.85 -17.57 -0.19 2.24 16 4 N -0.52 -7.97 9.26 -12.44 -0.12 -8.08 16 5 C 0.47 8.22 7.37 -155.01 -1.14 7.07 16 6 N -0.65 -12.45 3.89 -55.06 -0.21 -12.66 16 7 C 0.19 3.67 2.09 -69.08 -0.14 3.52 16 8 H 0.10 1.93 7.49 -51.93 -0.39 1.54 16 9 C 0.02 0.55 4.49 -27.87 -0.13 0.42 16 10 C -0.52 -14.01 8.84 -34.44 -0.30 -14.31 16 11 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 12 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 13 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 14 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 18 C -0.07 -1.28 4.93 -104.63 -0.52 -1.79 16 19 C -0.10 -1.63 9.67 -39.59 -0.38 -2.01 16 20 C -0.12 -1.67 10.05 -39.59 -0.40 -2.07 16 21 C -0.13 -1.78 10.05 -39.59 -0.40 -2.18 16 22 C -0.12 -1.80 10.05 -39.59 -0.40 -2.20 16 23 C -0.11 -1.88 9.32 -39.58 -0.37 -2.25 16 24 C -0.20 -3.33 6.08 -85.89 -0.52 -3.85 16 25 N 0.09 1.60 3.90 31.54 0.12 1.72 16 26 O -0.20 -3.63 18.65 -29.46 -0.55 -4.18 16 27 O -0.19 -3.91 16.40 -29.46 -0.48 -4.40 16 28 C 0.04 0.49 9.32 -39.32 -0.37 0.13 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 31 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 32 H 0.17 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.42 8.61 6.14 -40.82 -0.25 8.36 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.12 1.78 8.04 -52.48 -0.42 1.36 16 38 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 39 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 41 H 0.11 1.93 7.72 -52.49 -0.41 1.52 16 42 H 0.15 1.59 7.94 -52.49 -0.42 1.18 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -31.33 366.95 -10.83 -42.16 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.22 Total: 7.17 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -5.61 Total: -18.76 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.53 Total: -44.28 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -1.03 Total: -8.57 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.33 -10.83 -42.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269709687.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.036 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds