Wall clock time and date at job start Tue Mar 31 2020 14:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38068 * 120.33214 * 2 1 4 4 N 1.31938 * 120.84986 * 179.72222 * 3 2 1 5 5 C 1.32427 * 121.62655 * 0.51916 * 4 3 2 6 6 N 1.39002 * 119.70568 * 179.75457 * 5 4 3 7 7 C 1.46499 * 120.00090 * 5.19658 * 6 5 4 8 8 H 1.08994 * 109.47073 * 35.00502 * 7 6 5 9 9 C 1.53009 * 109.46860 * 155.00215 * 7 6 5 10 10 C 1.50708 * 109.46914 * 295.00000 * 9 7 6 11 11 H 1.08002 * 119.99909 * 0.02562 * 10 9 7 12 12 C 1.37870 * 119.99772 * 180.02562 * 10 9 7 13 13 N 1.31516 * 120.00026 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99893 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47107 * 89.99615 * 14 12 10 16 16 H 1.48501 * 109.46999 * 209.99853 * 14 12 10 17 17 H 1.48497 * 109.46831 * 329.99435 * 14 12 10 18 18 C 1.50695 * 109.47393 * 274.99937 * 7 6 5 19 19 C 1.38234 * 119.99981 * 140.00290 * 18 7 6 20 20 C 1.38230 * 120.00120 * 179.97438 * 19 18 7 21 21 C 1.38236 * 120.00121 * 359.97438 * 20 19 18 22 22 C 1.38229 * 119.99773 * 0.06721 * 21 20 19 23 23 C 1.38233 * 120.00368 * 359.89434 * 22 21 20 24 24 C 1.39095 * 120.58861 * 359.48085 * 5 4 3 25 25 N 1.35495 * 120.45150 * 180.27498 * 24 5 4 26 26 O 1.21798 * 119.99929 * 218.26831 * 25 24 5 27 27 O 1.21802 * 119.99859 * 38.27420 * 25 24 5 28 28 C 1.38345 * 119.09389 * 0.24979 * 24 5 4 29 29 H 1.08998 * 109.47331 * 270.02263 * 1 2 3 30 30 H 1.08995 * 109.47511 * 30.02608 * 1 2 3 31 31 H 1.09003 * 109.47250 * 150.02851 * 1 2 3 32 32 H 1.08000 * 119.57173 * 359.94674 * 3 2 1 33 33 H 0.96999 * 120.00234 * 185.20121 * 6 5 4 34 34 H 1.08991 * 109.47568 * 54.99958 * 9 7 6 35 35 H 1.09000 * 109.46900 * 175.00394 * 9 7 6 36 36 H 0.97002 * 119.99714 * 180.02562 * 13 12 10 37 37 H 1.08003 * 120.00177 * 359.97144 * 19 18 7 38 38 H 1.08005 * 120.00175 * 179.71898 * 20 19 18 39 39 H 1.07995 * 119.99839 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.00180 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00744 * 180.11023 * 23 22 21 42 42 H 1.08002 * 120.74132 * 179.97438 * 28 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1917 0.0000 4 7 3.5236 1.2036 0.0055 5 6 4.2282 0.0824 0.0010 6 7 5.6170 0.1415 0.0019 7 6 6.2950 1.4346 0.1227 8 1 5.7189 2.0869 0.7790 9 6 7.6920 1.2249 0.7104 10 6 7.5713 0.7047 2.1197 11 1 6.5957 0.5397 2.5527 12 6 8.7062 0.4394 2.8561 13 7 9.8942 0.6398 2.3286 14 14 8.5566 -0.2060 4.6028 15 1 8.5244 -1.6905 4.5808 16 1 9.7218 0.2521 5.4013 17 1 7.3047 0.3073 5.2145 18 6 6.4129 2.0692 -1.2390 19 6 6.2126 3.4288 -1.3876 20 6 6.3213 4.0110 -2.6366 21 6 6.6309 3.2337 -3.7370 22 6 6.8304 1.8740 -3.5885 23 6 6.7225 1.2918 -2.3394 24 6 3.5910 -1.1541 0.0010 25 7 4.3147 -2.2996 0.0020 26 8 3.9403 -3.2570 -0.6512 27 8 5.3396 -2.3718 0.6561 28 6 2.2083 -1.1982 0.0006 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3634 -0.8903 -0.5134 32 1 1.6627 2.1261 -0.0009 33 1 6.1372 -0.6733 -0.0775 34 1 8.2375 0.5033 0.1023 35 1 8.2291 2.1733 0.7180 36 1 10.6927 0.4528 2.8467 37 1 5.9710 4.0362 -0.5279 38 1 6.1603 5.0726 -2.7534 39 1 6.7154 3.6886 -4.7128 40 1 7.0719 1.2666 -4.4482 41 1 6.8801 0.2297 -2.2231 42 1 1.6861 -2.1436 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269709687.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:07 Heat of formation + Delta-G solvation = 50.053789 kcal Electronic energy + Delta-G solvation = -27882.134328 eV Core-core repulsion = 24022.930098 eV Total energy + Delta-G solvation = -3859.204230 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.09257 -41.49994 -40.33481 -38.11628 -37.39471 -35.34463 -34.54298 -34.13969 -32.10003 -31.70449 -30.60355 -28.35473 -27.53243 -26.55519 -24.57797 -23.79561 -23.36297 -23.05636 -21.50570 -20.08523 -19.99389 -19.39057 -18.77012 -18.65027 -17.72051 -17.35545 -16.65559 -16.30787 -16.12944 -15.80487 -15.61143 -15.01537 -14.65036 -14.56756 -14.33601 -14.24470 -13.86019 -13.79834 -13.70920 -13.47046 -13.01618 -12.95379 -12.71002 -12.66109 -12.55652 -12.37552 -12.26372 -12.23163 -11.95828 -11.73719 -11.52392 -11.47740 -11.04440 -10.86851 -10.62250 -9.81492 -9.59495 -9.05350 -8.24357 -6.33731 -1.27685 0.07626 0.21177 0.44838 0.50747 0.98331 1.34068 1.37976 1.45768 1.87052 2.36611 2.39048 2.90872 3.08696 3.10289 3.28598 3.61930 3.69253 3.88011 3.96896 4.00444 4.14740 4.25662 4.32676 4.37109 4.55560 4.58048 4.68147 4.72197 4.93176 5.00254 5.07000 5.12218 5.14224 5.24482 5.33961 5.40534 5.50404 5.56481 5.60014 5.66051 5.71834 5.89936 5.99313 6.10364 6.14426 6.51174 6.74485 6.76931 7.34903 8.86708 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.007754 B = 0.005852 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3610.124822 B = 4783.417850 C = 6898.268410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.194 4.194 3 C 0.219 3.781 4 N -0.540 5.540 5 C 0.460 3.540 6 N -0.666 5.666 7 C 0.206 3.794 8 H 0.086 0.914 9 C 0.034 3.966 10 C -0.525 4.525 11 H 0.050 0.950 12 C 0.012 3.988 13 N -0.925 5.925 14 Si 0.954 3.046 15 H -0.279 1.279 16 H -0.277 1.277 17 H -0.268 1.268 18 C -0.093 4.093 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.125 4.125 22 C -0.127 4.127 23 C -0.132 4.132 24 C -0.223 4.223 25 N 0.097 4.903 26 O -0.181 6.181 27 O -0.264 6.264 28 C 0.029 3.971 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.217 0.783 33 H 0.411 0.589 34 H -0.004 1.004 35 H 0.017 0.983 36 H 0.264 0.736 37 H 0.128 0.872 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.136 0.864 41 H 0.092 0.908 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.113 5.195 -10.208 23.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.200 4.200 3 C 0.056 3.944 4 N -0.258 5.258 5 C 0.217 3.783 6 N -0.294 5.294 7 C 0.102 3.898 8 H 0.104 0.896 9 C -0.003 4.003 10 C -0.563 4.563 11 H 0.068 0.932 12 C -0.187 4.187 13 N -0.565 5.565 14 Si 0.779 3.221 15 H -0.205 1.205 16 H -0.202 1.202 17 H -0.193 1.193 18 C -0.094 4.094 19 C -0.133 4.133 20 C -0.133 4.133 21 C -0.142 4.142 22 C -0.145 4.145 23 C -0.151 4.151 24 C -0.325 4.325 25 N 0.593 4.407 26 O -0.392 6.392 27 O -0.448 6.448 28 C 0.003 3.997 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.233 0.767 33 H 0.251 0.749 34 H 0.014 0.986 35 H 0.035 0.965 36 H 0.073 0.927 37 H 0.146 0.854 38 H 0.170 0.830 39 H 0.170 0.830 40 H 0.154 0.846 41 H 0.111 0.889 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -19.457 6.641 -10.045 22.882 hybrid contribution 0.898 -2.277 1.104 2.685 sum -18.559 4.364 -8.941 21.058 Atomic orbital electron populations 1.20701 0.85466 1.05027 1.03911 1.21032 1.00248 0.91043 1.07628 1.23815 0.87270 1.00511 0.82820 1.67761 1.10322 1.25497 1.22223 1.18294 0.86416 0.87673 0.85920 1.45565 1.01665 1.11539 1.70589 1.20008 0.94493 0.82568 0.92711 0.89558 1.19172 0.90078 0.96264 0.94795 1.21308 0.92336 1.43633 0.99037 0.93164 1.25741 0.95030 0.95639 1.02274 1.70061 0.98051 1.49630 1.38805 0.85616 0.77890 0.78569 0.80002 1.20534 1.20191 1.19258 1.20311 0.99261 0.95148 0.94652 1.21155 0.99941 0.93416 0.98831 1.21448 0.98981 1.01134 0.91761 1.21459 0.99481 0.93253 1.00044 1.21334 1.00262 0.96363 0.96530 1.20929 1.01369 0.99004 0.93798 1.19195 0.95593 0.85257 1.32503 1.39478 1.00926 1.02181 0.98076 1.94452 1.73729 1.31084 1.39961 1.94654 1.16431 1.90410 1.43333 1.21515 0.88057 1.02412 0.87718 0.89821 0.88543 0.90276 0.76704 0.74855 0.98552 0.96486 0.92692 0.85411 0.82986 0.83020 0.84613 0.88926 0.80940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 10.03 71.24 0.71 0.00 16 2 C -0.19 -3.27 5.90 -19.76 -0.12 -3.39 16 3 C 0.22 4.20 10.85 84.64 0.92 5.12 16 4 N -0.54 -16.13 9.26 -193.27 -1.79 -17.92 16 5 C 0.46 16.47 7.37 133.05 0.98 17.45 16 6 N -0.67 -27.64 3.89 -328.12 -1.28 -28.92 16 7 C 0.21 8.74 2.09 44.25 0.09 8.84 16 8 H 0.09 3.71 7.49 -2.39 -0.02 3.69 16 9 C 0.03 1.80 4.49 29.85 0.13 1.93 16 10 C -0.53 -30.06 8.84 25.60 0.23 -29.83 16 11 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 12 C 0.01 0.69 5.46 84.65 0.46 1.15 16 13 N -0.93 -56.46 13.29 21.44 0.28 -56.17 16 14 Si 0.95 46.23 29.54 68.60 2.03 48.26 16 15 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 18 C -0.09 -3.41 4.93 -19.87 -0.10 -3.51 16 19 C -0.11 -3.58 9.67 22.27 0.22 -3.37 16 20 C -0.12 -2.87 10.05 22.27 0.22 -2.64 16 21 C -0.12 -2.99 10.05 22.27 0.22 -2.77 16 22 C -0.13 -3.62 10.05 22.27 0.22 -3.40 16 23 C -0.13 -4.72 9.32 22.27 0.21 -4.51 16 24 C -0.22 -7.48 6.08 38.81 0.24 -7.24 16 25 N 0.10 3.76 3.90 -54.11 -0.21 3.55 16 26 O -0.18 -6.69 18.65 18.89 0.35 -6.34 16 27 O -0.26 -12.07 16.40 18.88 0.31 -11.76 16 28 C 0.03 0.69 9.32 22.44 0.21 0.90 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.10 0.34 8.09 -2.39 -0.02 0.32 16 31 H 0.08 0.50 8.09 -2.39 -0.02 0.48 16 32 H 0.22 2.04 8.06 -2.91 -0.02 2.01 16 33 H 0.41 18.72 6.14 -92.71 -0.57 18.15 16 34 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.13 3.71 8.04 -2.91 -0.02 3.69 16 38 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 39 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 40 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 41 H 0.09 3.54 7.72 -2.91 -0.02 3.52 16 42 H 0.17 3.20 7.94 -2.91 -0.02 3.18 16 Total: -1.00 -74.54 366.95 5.03 -69.51 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.48 Total: 25.04 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: 4.85 Total: -25.25 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -2.99 Total: -99.46 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.66 Total: -18.10 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -74.54 5.03 -69.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269709687.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.568 kcal (2) G-P(sol) polarization free energy of solvation -74.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds