Wall clock time and date at job start Tue Mar 31 2020 14:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38061 * 120.33513 * 2 1 4 4 N 1.31949 * 120.85088 * 180.02562 * 3 2 1 5 5 C 1.32422 * 121.62267 * 359.97438 * 4 3 2 6 6 N 1.39012 * 119.70289 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00188 * 354.80702 * 6 5 4 8 8 H 1.09001 * 109.47106 * 324.99712 * 7 6 5 9 9 C 1.52993 * 109.47356 * 204.99599 * 7 6 5 10 10 C 1.50703 * 109.47068 * 64.99831 * 9 7 6 11 11 H 1.08009 * 119.99860 * 359.97438 * 10 9 7 12 12 C 1.37876 * 120.00235 * 180.02562 * 10 9 7 13 13 N 1.31512 * 120.00088 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99959 * 0.02562 * 12 10 9 15 15 H 1.48510 * 109.46945 * 89.99865 * 14 12 10 16 16 H 1.48502 * 109.47436 * 209.99735 * 14 12 10 17 17 H 1.48503 * 109.47426 * 330.00331 * 14 12 10 18 18 C 1.50700 * 109.46860 * 84.99630 * 7 6 5 19 19 C 1.38230 * 120.00250 * 39.73289 * 18 7 6 20 20 C 1.38241 * 120.00050 * 179.81226 * 19 18 7 21 21 C 1.38231 * 119.99678 * 0.38782 * 20 19 18 22 22 C 1.38237 * 120.00210 * 359.86107 * 21 20 19 23 23 C 1.38230 * 119.99942 * 359.95779 * 22 21 20 24 24 C 1.39091 * 120.59190 * 0.27894 * 5 4 3 25 25 N 1.48005 * 120.45105 * 179.70066 * 24 5 4 26 26 O 1.21801 * 119.99834 * 185.66159 * 25 24 5 27 27 O 1.21793 * 119.99786 * 5.66155 * 25 24 5 28 28 C 1.38342 * 119.09583 * 359.45369 * 24 5 4 29 29 H 1.09005 * 109.47074 * 89.99793 * 1 2 3 30 30 H 1.09001 * 109.47600 * 210.00360 * 1 2 3 31 31 H 1.09001 * 109.47208 * 330.00209 * 1 2 3 32 32 H 1.07998 * 119.57496 * 0.04078 * 3 2 1 33 33 H 0.97001 * 120.00083 * 174.80118 * 6 5 4 34 34 H 1.08992 * 109.47583 * 184.99603 * 9 7 6 35 35 H 1.09002 * 109.46869 * 305.00450 * 9 7 6 36 36 H 0.97003 * 119.99832 * 179.97438 * 13 12 10 37 37 H 1.07995 * 120.00291 * 359.97438 * 19 18 7 38 38 H 1.08000 * 119.99876 * 180.22895 * 20 19 18 39 39 H 1.08007 * 119.99920 * 179.83889 * 21 20 19 40 40 H 1.07997 * 119.99898 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.00096 * 180.02562 * 23 22 21 42 42 H 1.08009 * 120.74677 * 180.25864 * 28 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1916 0.0000 4 7 3.5237 1.2035 -0.0005 5 6 4.2282 0.0822 -0.0005 6 7 5.6170 0.1412 -0.0016 7 6 6.2952 1.4347 -0.1176 8 1 5.7190 2.0897 -0.7711 9 6 7.6919 1.2273 -0.7063 10 6 7.5709 0.7127 -2.1176 11 1 6.5951 0.5494 -2.5510 12 6 8.7056 0.4493 -2.8551 13 7 8.6000 -0.0003 -4.0865 14 14 10.3932 0.7295 -2.1047 15 1 10.8460 -0.5120 -1.4272 16 1 11.3575 1.0891 -3.1753 17 1 10.3177 1.8342 -1.1151 18 6 6.4134 2.0639 1.2467 19 6 6.7167 1.2811 2.3449 20 6 6.8290 1.8590 3.5958 21 6 6.6301 3.2182 3.7495 22 6 6.3217 4.0002 2.6520 23 6 6.2131 3.4230 1.4007 24 6 3.5909 -1.1542 -0.0058 25 7 4.3813 -2.4054 -0.0125 26 8 3.8190 -3.4804 -0.1212 27 8 5.5940 -2.3602 0.0907 28 6 2.2082 -1.1983 0.0004 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6629 2.1260 0.0007 33 1 6.1372 -0.6740 0.0745 34 1 8.2291 2.1757 -0.7103 35 1 8.2375 0.5032 -0.1012 36 1 9.3983 -0.1853 -4.6054 37 1 6.8686 0.2186 2.2254 38 1 7.0697 1.2480 4.4532 39 1 6.7153 3.6693 4.7272 40 1 6.1659 5.0620 2.7723 41 1 5.9726 4.0339 0.5432 42 1 1.6859 -2.1437 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269709689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:13 Heat of formation + Delta-G solvation = 62.281321 kcal Electronic energy + Delta-G solvation = -27841.513301 eV Core-core repulsion = 23982.839296 eV Total energy + Delta-G solvation = -3858.674005 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.02134 -40.33490 -39.16867 -36.84641 -35.98637 -33.80636 -32.99522 -32.37588 -30.85705 -30.55123 -29.36811 -26.89886 -26.29865 -25.09399 -23.08818 -22.45449 -22.03845 -21.76117 -20.02912 -18.64424 -18.53925 -17.82118 -17.30565 -17.20402 -16.67447 -16.27680 -15.11461 -14.95783 -14.79170 -14.57569 -14.26879 -13.76366 -13.54047 -13.49605 -13.15354 -13.04916 -12.93515 -12.68397 -12.44855 -12.40595 -11.91083 -11.43439 -11.24265 -11.21520 -10.95698 -10.91372 -10.82424 -10.64012 -10.43781 -10.33484 -10.04482 -9.77889 -9.68789 -9.34686 -8.70146 -8.61880 -8.41045 -7.78339 -6.11572 -4.12116 0.08129 1.16347 1.52903 1.58737 1.62728 1.69121 3.24885 3.28169 3.35457 3.37246 3.52927 4.03884 4.25185 4.38445 4.39311 4.63378 4.71532 4.84409 5.08290 5.11156 5.18467 5.22833 5.33832 5.35357 5.39754 5.42475 5.66359 5.73142 5.75075 5.87251 5.90181 6.11720 6.14359 6.21856 6.31822 6.57523 6.66447 6.68821 6.83479 6.92402 6.96612 7.21969 7.33025 7.40788 7.61897 7.91105 8.19949 8.40177 8.90716 9.48675 11.01297 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.008576 B = 0.005538 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3264.294476 B = 5055.191452 C = 6877.991343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.222 4.222 3 C 0.211 3.789 4 N -0.521 5.521 5 C 0.469 3.531 6 N -0.651 5.651 7 C 0.193 3.807 8 H 0.097 0.903 9 C -0.015 4.015 10 C -0.523 4.523 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.896 5.896 14 Si 0.876 3.124 15 H -0.274 1.274 16 H -0.287 1.287 17 H -0.265 1.265 18 C -0.076 4.076 19 C -0.111 4.111 20 C -0.124 4.124 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.103 4.103 24 C -0.178 4.178 25 N 0.058 4.942 26 O -0.174 6.174 27 O -0.186 6.186 28 C 0.033 3.967 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.170 0.830 33 H 0.429 0.571 34 H 0.039 0.961 35 H 0.022 0.978 36 H 0.265 0.735 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.893 4.489 13.251 19.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.229 4.229 3 C 0.046 3.954 4 N -0.239 5.239 5 C 0.225 3.775 6 N -0.287 5.287 7 C 0.088 3.912 8 H 0.115 0.885 9 C -0.053 4.053 10 C -0.561 4.561 11 H 0.090 0.910 12 C -0.129 4.129 13 N -0.534 5.534 14 Si 0.703 3.297 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.189 1.189 18 C -0.077 4.077 19 C -0.129 4.129 20 C -0.142 4.142 21 C -0.150 4.150 22 C -0.141 4.141 23 C -0.122 4.122 24 C -0.272 4.272 25 N 0.567 4.433 26 O -0.386 6.386 27 O -0.388 6.388 28 C 0.007 3.993 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.187 0.813 33 H 0.280 0.720 34 H 0.057 0.943 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.141 0.859 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.328 5.851 13.065 19.559 hybrid contribution 0.954 -1.338 0.224 1.659 sum -12.373 4.513 13.289 18.710 Atomic orbital electron populations 1.20537 0.89149 1.02983 1.02527 1.20500 0.98038 0.92261 1.12058 1.22875 0.88612 0.98127 0.85785 1.67760 1.08374 1.26022 1.21739 1.18200 0.87281 0.86374 0.85642 1.46299 1.00700 1.13003 1.68688 1.20215 0.96471 0.83130 0.91342 0.88456 1.19905 0.90006 0.98094 0.97267 1.20918 0.94918 1.44564 0.95682 0.90997 1.24960 0.99083 0.94225 0.94627 1.69898 1.29514 1.44677 1.09289 0.86844 0.84353 0.79321 0.79228 1.19989 1.21251 1.18933 1.20476 0.97278 0.94054 0.95885 1.20989 0.99618 0.99888 0.92414 1.21061 1.00904 0.95121 0.97083 1.21031 1.01427 0.94063 0.98446 1.21057 1.00718 0.99429 0.92855 1.20993 0.99490 0.94362 0.97315 1.21376 0.92754 0.83400 1.29718 1.43248 1.00917 1.02262 0.96901 1.94475 1.73231 1.17004 1.53938 1.94251 0.96386 1.92426 1.55692 1.21056 0.89992 1.00339 0.87920 0.91170 0.91500 0.91187 0.81317 0.72008 0.94342 0.96027 0.92555 0.86550 0.86629 0.86716 0.86443 0.85910 0.82713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 10.03 36.01 0.36 -0.26 16 2 C -0.22 -2.31 5.90 -104.46 -0.62 -2.93 16 3 C 0.21 2.40 10.85 -17.57 -0.19 2.21 16 4 N -0.52 -8.03 9.26 -12.44 -0.12 -8.15 16 5 C 0.47 8.18 7.43 -155.01 -1.15 7.03 16 6 N -0.65 -12.50 4.05 -55.06 -0.22 -12.73 16 7 C 0.19 3.73 2.09 -69.08 -0.14 3.59 16 8 H 0.10 1.95 7.49 -51.93 -0.39 1.57 16 9 C -0.02 -0.35 3.56 -27.89 -0.10 -0.44 16 10 C -0.52 -14.34 9.39 -34.44 -0.32 -14.67 16 11 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 12 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 13 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 14 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 18 C -0.08 -1.28 4.93 -104.62 -0.52 -1.80 16 19 C -0.11 -1.79 9.33 -39.58 -0.37 -2.16 16 20 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 21 C -0.13 -1.68 10.05 -39.58 -0.40 -2.07 16 22 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 23 C -0.10 -1.55 9.67 -39.58 -0.38 -1.94 16 24 C -0.18 -2.94 6.88 -79.60 -0.55 -3.49 16 25 N 0.06 1.09 4.45 34.13 0.15 1.24 16 26 O -0.17 -3.14 18.54 -29.46 -0.55 -3.69 16 27 O -0.19 -3.78 15.74 -29.46 -0.46 -4.25 16 28 C 0.03 0.42 9.35 -39.32 -0.37 0.06 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 31 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.43 8.71 5.04 -41.15 -0.21 8.50 16 34 H 0.04 0.88 7.20 -51.93 -0.37 0.50 16 35 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.12 1.89 7.71 -52.49 -0.40 1.49 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.11 1.16 8.06 -52.48 -0.42 0.73 16 40 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 41 H 0.12 1.72 8.04 -52.49 -0.42 1.30 16 42 H 0.16 1.63 7.70 -52.48 -0.40 1.23 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -32.23 362.85 -10.40 -42.62 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.13 Total: 8.31 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -5.64 Total: -18.98 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.59 Total: -46.16 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -1.01 Total: -7.93 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.23 -10.40 -42.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269709689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.905 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds