Wall clock time and date at job start Tue Mar 31 2020 14:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38061 * 120.33513 * 2 1 4 4 N 1.31949 * 120.85088 * 180.02562 * 3 2 1 5 5 C 1.32422 * 121.62267 * 359.97438 * 4 3 2 6 6 N 1.39012 * 119.70289 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00188 * 354.80702 * 6 5 4 8 8 H 1.09001 * 109.47106 * 324.99712 * 7 6 5 9 9 C 1.52993 * 109.47356 * 204.99599 * 7 6 5 10 10 C 1.50703 * 109.47068 * 64.99831 * 9 7 6 11 11 H 1.08009 * 119.99860 * 359.97438 * 10 9 7 12 12 C 1.37876 * 120.00235 * 180.02562 * 10 9 7 13 13 N 1.31512 * 120.00088 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99959 * 0.02562 * 12 10 9 15 15 H 1.48510 * 109.46945 * 89.99865 * 14 12 10 16 16 H 1.48502 * 109.47436 * 209.99735 * 14 12 10 17 17 H 1.48503 * 109.47426 * 330.00331 * 14 12 10 18 18 C 1.50700 * 109.46860 * 84.99630 * 7 6 5 19 19 C 1.38230 * 120.00250 * 39.73289 * 18 7 6 20 20 C 1.38241 * 120.00050 * 179.81226 * 19 18 7 21 21 C 1.38231 * 119.99678 * 0.38782 * 20 19 18 22 22 C 1.38237 * 120.00210 * 359.86107 * 21 20 19 23 23 C 1.38230 * 119.99942 * 359.95779 * 22 21 20 24 24 C 1.39091 * 120.59190 * 0.27894 * 5 4 3 25 25 N 1.48005 * 120.45105 * 179.70066 * 24 5 4 26 26 O 1.21801 * 119.99834 * 185.66159 * 25 24 5 27 27 O 1.21793 * 119.99786 * 5.66155 * 25 24 5 28 28 C 1.38342 * 119.09583 * 359.45369 * 24 5 4 29 29 H 1.09005 * 109.47074 * 89.99793 * 1 2 3 30 30 H 1.09001 * 109.47600 * 210.00360 * 1 2 3 31 31 H 1.09001 * 109.47208 * 330.00209 * 1 2 3 32 32 H 1.07998 * 119.57496 * 0.04078 * 3 2 1 33 33 H 0.97001 * 120.00083 * 174.80118 * 6 5 4 34 34 H 1.08992 * 109.47583 * 184.99603 * 9 7 6 35 35 H 1.09002 * 109.46869 * 305.00450 * 9 7 6 36 36 H 0.97003 * 119.99832 * 179.97438 * 13 12 10 37 37 H 1.07995 * 120.00291 * 359.97438 * 19 18 7 38 38 H 1.08000 * 119.99876 * 180.22895 * 20 19 18 39 39 H 1.08007 * 119.99920 * 179.83889 * 21 20 19 40 40 H 1.07997 * 119.99898 * 179.97438 * 22 21 20 41 41 H 1.08002 * 120.00096 * 180.02562 * 23 22 21 42 42 H 1.08009 * 120.74677 * 180.25864 * 28 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1916 0.0000 4 7 3.5237 1.2035 -0.0005 5 6 4.2282 0.0822 -0.0005 6 7 5.6170 0.1412 -0.0016 7 6 6.2952 1.4347 -0.1176 8 1 5.7190 2.0897 -0.7711 9 6 7.6919 1.2273 -0.7063 10 6 7.5709 0.7127 -2.1176 11 1 6.5951 0.5494 -2.5510 12 6 8.7056 0.4493 -2.8551 13 7 8.6000 -0.0003 -4.0865 14 14 10.3932 0.7295 -2.1047 15 1 10.8460 -0.5120 -1.4272 16 1 11.3575 1.0891 -3.1753 17 1 10.3177 1.8342 -1.1151 18 6 6.4134 2.0639 1.2467 19 6 6.7167 1.2811 2.3449 20 6 6.8290 1.8590 3.5958 21 6 6.6301 3.2182 3.7495 22 6 6.3217 4.0002 2.6520 23 6 6.2131 3.4230 1.4007 24 6 3.5909 -1.1542 -0.0058 25 7 4.3813 -2.4054 -0.0125 26 8 3.8190 -3.4804 -0.1212 27 8 5.5940 -2.3602 0.0907 28 6 2.2082 -1.1983 0.0004 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6629 2.1260 0.0007 33 1 6.1372 -0.6740 0.0745 34 1 8.2291 2.1757 -0.7103 35 1 8.2375 0.5032 -0.1012 36 1 9.3983 -0.1853 -4.6054 37 1 6.8686 0.2186 2.2254 38 1 7.0697 1.2480 4.4532 39 1 6.7153 3.6693 4.7272 40 1 6.1659 5.0620 2.7723 41 1 5.9726 4.0339 0.5432 42 1 1.6859 -2.1437 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269709689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:12 Heat of formation + Delta-G solvation = 44.866761 kcal Electronic energy + Delta-G solvation = -27842.268453 eV Core-core repulsion = 23982.839296 eV Total energy + Delta-G solvation = -3859.429157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.38197 -41.52501 -40.32684 -38.17132 -37.38805 -35.27901 -34.32131 -33.97187 -31.98966 -31.65198 -31.02551 -28.00066 -27.54746 -26.50960 -24.43227 -23.65877 -23.25118 -23.14316 -21.41939 -19.95206 -19.88475 -19.13665 -19.00444 -18.68404 -18.03210 -17.47670 -16.52648 -16.28436 -16.03748 -15.79567 -15.62951 -15.08766 -14.74180 -14.55865 -14.45364 -14.20255 -13.92168 -13.90924 -13.80130 -13.62968 -13.13527 -12.94011 -12.73813 -12.51636 -12.44212 -12.40055 -12.28328 -12.04911 -11.85326 -11.82458 -11.57456 -11.48033 -11.07161 -10.86479 -10.79098 -9.79299 -9.59336 -8.99403 -8.34024 -6.38788 -1.19044 0.10313 0.25998 0.40657 0.46291 0.52914 1.32486 1.33225 1.44336 1.97697 2.30771 2.43904 2.92062 3.01910 3.15220 3.29860 3.64865 3.72439 3.86291 3.98782 4.03401 4.17632 4.25856 4.32891 4.41651 4.51241 4.60184 4.68823 4.72621 4.94253 4.98137 4.98376 5.09874 5.11502 5.14795 5.19292 5.28004 5.45638 5.50206 5.61621 5.62432 5.68219 5.99003 6.07719 6.14710 6.17812 6.49882 6.65896 6.85809 7.25200 8.82680 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.008576 B = 0.005538 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3264.294476 B = 5055.191452 C = 6877.991343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.194 4.194 3 C 0.211 3.789 4 N -0.540 5.540 5 C 0.450 3.550 6 N -0.670 5.670 7 C 0.206 3.794 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.519 4.519 11 H 0.027 0.973 12 C 0.011 3.989 13 N -0.947 5.947 14 Si 0.945 3.055 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.244 1.244 18 C -0.093 4.093 19 C -0.129 4.129 20 C -0.126 4.126 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.114 4.114 24 C -0.198 4.198 25 N 0.060 4.940 26 O -0.157 6.157 27 O -0.250 6.250 28 C 0.025 3.975 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.215 0.785 33 H 0.419 0.581 34 H 0.043 0.957 35 H 0.020 0.980 36 H 0.266 0.734 37 H 0.100 0.900 38 H 0.137 0.863 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.127 0.873 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.946 6.833 15.995 23.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.200 4.200 3 C 0.048 3.952 4 N -0.258 5.258 5 C 0.208 3.792 6 N -0.306 5.306 7 C 0.102 3.898 8 H 0.099 0.901 9 C -0.047 4.047 10 C -0.557 4.557 11 H 0.045 0.955 12 C -0.186 4.186 13 N -0.587 5.587 14 Si 0.768 3.232 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.167 1.167 18 C -0.094 4.094 19 C -0.148 4.148 20 C -0.144 4.144 21 C -0.141 4.141 22 C -0.134 4.134 23 C -0.133 4.133 24 C -0.293 4.293 25 N 0.562 4.438 26 O -0.377 6.377 27 O -0.437 6.437 28 C -0.002 4.002 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.231 0.769 33 H 0.268 0.732 34 H 0.061 0.939 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.155 0.845 39 H 0.168 0.832 40 H 0.168 0.832 41 H 0.145 0.855 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -15.326 8.241 15.837 23.529 hybrid contribution 1.222 -2.032 -0.631 2.454 sum -14.104 6.209 15.206 21.650 Atomic orbital electron populations 1.20696 0.85493 1.04985 1.03876 1.21031 1.00220 0.90741 1.07996 1.23766 0.87379 1.00523 0.83578 1.67819 1.10340 1.25229 1.22409 1.18401 0.86813 0.87482 0.86535 1.46213 1.01817 1.12223 1.70361 1.19814 0.93884 0.83340 0.92787 0.90145 1.19771 0.92832 0.97597 0.94460 1.21126 0.92976 1.43781 0.97846 0.95473 1.25912 1.03660 0.94089 0.94982 1.70057 1.30773 1.46771 1.11125 0.85742 0.78772 0.79908 0.78776 1.19602 1.20683 1.16696 1.20250 0.99675 0.95008 0.94499 1.20995 1.00958 0.99295 0.93526 1.21344 1.00256 0.96255 0.96582 1.21462 0.99372 0.93359 0.99956 1.21426 0.99129 1.01089 0.91784 1.21155 0.99834 0.93514 0.98772 1.21692 0.93969 0.81932 1.31715 1.43588 1.00822 1.03013 0.96412 1.94406 1.72901 1.17929 1.52508 1.94256 0.97586 1.92790 1.59025 1.21491 0.88282 1.02475 0.87928 0.89913 0.90179 0.88635 0.76887 0.73183 0.93909 0.96192 0.92469 0.88177 0.84540 0.83181 0.83186 0.85521 0.80507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 10.03 71.24 0.71 -0.07 16 2 C -0.19 -3.45 5.90 -19.76 -0.12 -3.56 16 3 C 0.21 4.26 10.85 84.63 0.92 5.18 16 4 N -0.54 -16.59 9.26 -193.26 -1.79 -18.38 16 5 C 0.45 16.47 7.43 133.04 0.99 17.46 16 6 N -0.67 -27.80 4.05 -328.12 -1.33 -29.13 16 7 C 0.21 8.46 2.09 44.24 0.09 8.55 16 8 H 0.08 3.46 7.49 -2.39 -0.02 3.44 16 9 C -0.01 -0.43 3.56 29.85 0.11 -0.32 16 10 C -0.52 -30.29 9.39 25.60 0.24 -30.05 16 11 H 0.03 1.77 7.99 -2.91 -0.02 1.75 16 12 C 0.01 0.65 5.47 84.65 0.46 1.12 16 13 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 14 Si 0.94 45.23 27.47 68.60 1.88 47.11 16 15 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 17 H -0.24 -10.73 6.54 99.48 0.65 -10.08 16 18 C -0.09 -3.20 4.93 -19.87 -0.10 -3.30 16 19 C -0.13 -4.22 9.33 22.27 0.21 -4.01 16 20 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 21 C -0.12 -2.70 10.05 22.27 0.22 -2.47 16 22 C -0.12 -2.66 10.05 22.27 0.22 -2.43 16 23 C -0.11 -3.31 9.67 22.27 0.22 -3.10 16 24 C -0.20 -6.77 6.88 36.61 0.25 -6.52 16 25 N 0.06 2.36 4.45 -45.93 -0.20 2.16 16 26 O -0.16 -5.88 18.54 18.89 0.35 -5.53 16 27 O -0.25 -11.18 15.74 18.89 0.30 -10.88 16 28 C 0.02 0.59 9.35 22.44 0.21 0.80 16 29 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.08 0.55 8.09 -2.39 -0.02 0.53 16 31 H 0.09 0.41 8.09 -2.39 -0.02 0.39 16 32 H 0.21 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.42 18.84 5.04 -98.01 -0.49 18.35 16 34 H 0.04 1.99 7.20 -2.39 -0.02 1.97 16 35 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 36 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 37 H 0.10 3.50 7.71 -2.91 -0.02 3.48 16 38 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 39 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 40 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 41 H 0.13 3.45 8.04 -2.91 -0.02 3.43 16 42 H 0.18 3.37 7.70 -2.91 -0.02 3.35 16 Total: -1.00 -77.10 362.85 4.88 -72.22 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.50 Total: 28.55 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 4.87 Total: -25.77 kcal Atomic # 7 Polarization: -102.68 SS G_CDS: -3.02 Total: -105.70 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: 0.65 Total: -16.41 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.88 Total: 47.11 kcal Total: -77.10 4.88 -72.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269709689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.086 kcal (2) G-P(sol) polarization free energy of solvation -77.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds