Wall clock time and date at job start Tue Mar 31 2020 14:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31918 * 120.17248 * 2 1 4 4 N 1.28278 * 122.32471 * 180.27559 * 3 2 1 5 5 C 1.31919 * 122.52085 * 359.71238 * 4 3 2 6 6 C 1.38488 * 119.97237 * 0.02562 * 5 4 3 7 7 C 1.39742 * 120.17407 * 179.72822 * 2 1 3 8 8 C 1.48096 * 121.14614 * 0.02670 * 7 2 1 9 9 O 1.21532 * 120.00080 * 4.12379 * 8 7 2 10 10 N 1.34776 * 120.00152 * 184.12664 * 8 7 2 11 11 C 1.39835 * 120.00440 * 184.73701 * 10 8 7 12 12 C 1.38952 * 120.04977 * 144.75973 * 11 10 8 13 13 C 1.38114 * 120.03874 * 179.97438 * 12 11 10 14 14 C 1.38217 * 120.12956 * 359.72691 * 13 12 11 15 15 C 1.38777 * 120.08569 * 0.55210 * 14 13 12 16 16 O 1.35896 * 120.01603 * 179.71829 * 15 14 13 17 17 C 1.42897 * 117.00223 * 359.72803 * 16 15 14 18 18 C 1.52997 * 109.46844 * 179.97438 * 17 16 15 19 19 C 1.50708 * 109.46956 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99682 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99919 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99589 * 179.97438 * 21 19 18 23 23 Si 1.86791 * 120.00057 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47406 * 90.00189 * 23 21 19 25 25 H 1.48501 * 109.47280 * 210.00146 * 23 21 19 26 26 H 1.48502 * 109.47404 * 330.00162 * 23 21 19 27 27 C 1.38624 * 119.95796 * 359.45091 * 15 14 13 28 28 H 1.09000 * 109.47606 * 263.27435 * 1 2 3 29 29 H 1.09001 * 109.46908 * 23.27757 * 1 2 3 30 30 H 1.08998 * 109.47054 * 143.27607 * 1 2 3 31 31 H 1.07999 * 120.01341 * 179.97438 * 5 4 3 32 32 H 1.08009 * 121.09192 * 180.02562 * 6 5 4 33 33 H 0.97002 * 119.99999 * 4.73012 * 10 8 7 34 34 H 1.08007 * 119.97546 * 359.96365 * 12 11 10 35 35 H 1.08003 * 119.93141 * 180.02562 * 13 12 11 36 36 H 1.07997 * 119.95913 * 180.29560 * 14 13 12 37 37 H 1.09001 * 109.47043 * 299.99972 * 17 16 15 38 38 H 1.09006 * 109.46885 * 60.00040 * 17 16 15 39 39 H 1.09001 * 109.47307 * 299.99846 * 18 17 16 40 40 H 1.08993 * 109.47484 * 60.00075 * 18 17 16 41 41 H 0.97003 * 120.00002 * 180.02562 * 22 21 19 42 42 H 1.07997 * 120.05795 * 180.29876 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1700 1.1404 0.0000 4 7 3.4519 1.1886 -0.0052 5 6 4.2024 0.1037 -0.0054 6 6 3.6094 -1.1478 -0.0003 7 6 2.2094 -1.2081 0.0057 8 6 1.4986 -2.5073 0.0113 9 8 0.2861 -2.5370 -0.0647 10 7 2.1965 -3.6569 0.1008 11 6 1.5354 -4.8854 0.0064 12 6 2.1548 -5.9630 -0.6147 13 6 1.5018 -7.1765 -0.7073 14 6 0.2336 -7.3241 -0.1778 15 6 -0.3923 -6.2498 0.4385 16 8 -1.6415 -6.3949 0.9535 17 6 -2.2532 -7.6793 0.8198 18 6 -3.6448 -7.6500 1.4550 19 6 -4.2897 -9.0049 1.3145 20 1 -3.7601 -9.8065 0.8211 21 6 -5.5563 -9.2207 1.8149 22 7 -6.1192 -10.4029 1.6918 23 14 -6.4724 -7.8341 2.6676 24 1 -7.2664 -7.0765 1.6670 25 1 -7.3824 -8.4005 3.6954 26 1 -5.4970 -6.9228 3.3182 27 6 0.2597 -5.0301 0.5334 28 1 -0.3634 -0.1204 1.0206 29 1 -0.3633 0.9440 -0.4061 30 1 -0.3633 -0.8237 -0.6145 31 1 5.2788 0.1915 -0.0103 32 1 4.2064 -2.0479 0.0001 33 1 3.1575 -3.6320 0.2305 34 1 3.1475 -5.8515 -1.0255 35 1 1.9851 -8.0131 -1.1900 36 1 -0.2726 -8.2756 -0.2475 37 1 -2.3410 -7.9317 -0.2370 38 1 -1.6404 -8.4277 1.3225 39 1 -3.5567 -7.3978 2.5117 40 1 -4.2578 -6.9016 0.9528 41 1 -7.0104 -10.5547 2.0435 42 1 -0.2239 -4.1943 1.0170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269895045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:26 Heat of formation + Delta-G solvation = 17.779745 kcal Electronic energy + Delta-G solvation = -25960.710754 eV Core-core repulsion = 22100.107016 eV Total energy + Delta-G solvation = -3860.603738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.93891 -40.65260 -39.42699 -37.44826 -35.20904 -34.24795 -33.70097 -33.34081 -31.18574 -30.07796 -29.41991 -28.50122 -26.24088 -25.25890 -23.69058 -23.26909 -22.21145 -21.39839 -20.34442 -19.03366 -18.48817 -17.73891 -16.78178 -16.41257 -16.26779 -16.19682 -15.92846 -15.60082 -15.52253 -15.37090 -14.82847 -14.37616 -14.12638 -13.82564 -13.60682 -13.35049 -13.15721 -12.98718 -12.72182 -12.52439 -12.02260 -11.93827 -11.64579 -11.51517 -11.05022 -10.97095 -10.88788 -10.69419 -10.47917 -10.26586 -10.21493 -10.01824 -9.85876 -9.82210 -9.36460 -8.63918 -8.49435 -8.00599 -6.15097 -4.16138 -0.31027 0.29256 1.19528 1.46734 2.23282 2.34255 3.03162 3.28358 3.35580 3.41257 3.45888 3.56734 3.73380 3.76487 3.79949 4.00719 4.13206 4.38164 4.70406 4.79229 4.85073 5.00197 5.02898 5.19164 5.20462 5.23373 5.37088 5.40852 5.50227 5.58510 5.64107 5.86558 5.88419 5.99764 6.07286 6.17031 6.34757 6.39961 6.54162 6.74926 6.85711 7.06279 7.21135 7.52337 7.60151 7.85062 8.11237 8.36655 8.85212 9.45226 10.97288 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.002346 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.613935 B =11931.916149 C =13369.995616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.131 3.869 3 N -0.243 5.243 4 N -0.219 5.219 5 C 0.027 3.973 6 C -0.080 4.080 7 C -0.135 4.135 8 C 0.560 3.440 9 O -0.486 6.486 10 N -0.661 5.661 11 C 0.169 3.831 12 C -0.190 4.190 13 C -0.061 4.061 14 C -0.219 4.219 15 C 0.163 3.837 16 O -0.315 6.315 17 C 0.072 3.928 18 C -0.009 4.009 19 C -0.527 4.527 20 H 0.075 0.925 21 C 0.072 3.928 22 N -0.897 5.897 23 Si 0.880 3.120 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.263 1.263 27 C -0.160 4.160 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.181 0.819 32 H 0.155 0.845 33 H 0.410 0.590 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.028 0.972 40 H 0.024 0.976 41 H 0.266 0.734 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.703 16.829 -4.625 30.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.013 4.013 3 N -0.087 5.087 4 N -0.061 5.061 5 C -0.137 4.137 6 C -0.109 4.109 7 C -0.149 4.149 8 C 0.347 3.653 9 O -0.359 6.359 10 N -0.306 5.306 11 C 0.076 3.924 12 C -0.210 4.210 13 C -0.079 4.079 14 C -0.239 4.239 15 C 0.115 3.885 16 O -0.228 6.228 17 C -0.002 4.002 18 C -0.047 4.047 19 C -0.565 4.565 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.707 3.293 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.187 1.187 27 C -0.181 4.181 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.132 0.868 31 H 0.198 0.802 32 H 0.173 0.827 33 H 0.246 0.754 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.153 0.847 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 23.455 18.547 -4.543 30.245 hybrid contribution 0.306 -1.283 0.387 1.375 sum 23.761 17.264 -4.156 29.663 Atomic orbital electron populations 1.21160 0.85896 1.05363 1.05120 1.23249 0.99944 0.88319 0.89756 1.73165 1.01387 1.23933 1.10184 1.72900 0.99749 1.27866 1.05601 1.24320 1.02923 0.89098 0.97349 1.22686 0.93876 1.00627 0.93742 1.20972 0.94538 0.95279 1.04143 1.17972 0.87199 0.83022 0.77144 1.90821 1.12711 1.86146 1.46249 1.43194 1.11495 1.04043 1.71909 1.17214 0.92869 0.84315 0.97977 1.20640 1.01629 0.93346 1.05412 1.20693 0.93776 0.96527 0.96943 1.21469 0.97507 0.99671 1.05208 1.18926 0.85272 0.92979 0.91311 1.86147 1.25737 1.37146 1.73764 1.23124 0.95729 0.80509 1.00849 1.19593 0.89771 0.98629 0.96696 1.20828 1.01216 0.95282 1.39153 0.90735 1.24933 0.97133 0.95666 0.95296 1.69891 1.15626 1.21932 1.46075 0.86759 0.80022 0.82597 0.79907 1.20020 1.21177 1.18732 1.20391 0.95049 0.97247 1.05392 0.89109 0.90156 0.86838 0.80227 0.82703 0.75367 0.85944 0.85405 0.84741 0.92371 0.92363 0.95385 0.95759 0.92437 0.83709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.12 36.01 0.33 -0.78 16 2 C 0.13 1.30 6.91 -81.99 -0.57 0.73 16 3 N -0.24 -2.67 11.42 33.81 0.39 -2.29 16 4 N -0.22 -2.11 11.48 30.52 0.35 -1.76 16 5 C 0.03 0.15 11.30 -17.42 -0.20 -0.05 16 6 C -0.08 -0.39 9.68 -38.78 -0.38 -0.76 16 7 C -0.13 -1.10 5.92 -104.58 -0.62 -1.72 16 8 C 0.56 5.54 7.61 -12.21 -0.09 5.45 16 9 O -0.49 -6.46 10.85 5.34 0.06 -6.40 16 10 N -0.66 -5.38 5.28 -10.66 -0.06 -5.44 16 11 C 0.17 1.93 6.29 -83.74 -0.53 1.41 16 12 C -0.19 -1.88 9.96 -39.36 -0.39 -2.28 16 13 C -0.06 -0.67 10.03 -39.63 -0.40 -1.07 16 14 C -0.22 -3.11 9.04 -39.39 -0.36 -3.47 16 15 C 0.16 2.69 6.68 -39.24 -0.26 2.43 16 16 O -0.32 -6.15 10.13 -19.41 -0.20 -6.35 16 17 C 0.07 1.46 4.68 37.16 0.17 1.63 16 18 C -0.01 -0.23 4.41 -27.88 -0.12 -0.35 16 19 C -0.53 -14.73 9.66 -34.44 -0.33 -15.06 16 20 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 21 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 22 N -0.90 -27.12 13.96 55.43 0.77 -26.34 16 23 Si 0.88 21.59 27.47 -169.99 -4.67 16.93 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 27 C -0.16 -2.38 8.63 -39.24 -0.34 -2.72 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.11 1.20 5.69 -51.93 -0.30 0.90 16 31 H 0.18 0.31 8.06 -52.49 -0.42 -0.11 16 32 H 0.16 0.10 6.67 -52.48 -0.35 -0.25 16 33 H 0.41 1.65 7.06 -40.82 -0.29 1.36 16 34 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 35 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 36 H 0.13 1.89 6.29 -52.49 -0.33 1.56 16 37 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 38 H 0.06 1.12 7.65 -51.93 -0.40 0.72 16 39 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 40 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 42 H 0.15 2.32 6.23 -52.49 -0.33 1.99 16 LS Contribution 355.53 15.07 5.36 5.36 Total: -1.00 -34.51 355.53 -7.02 -41.53 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -4.85 Total: -0.59 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -4.18 Total: -14.64 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 1.45 Total: -35.83 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.14 Total: -12.75 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.51 -7.02 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269895045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.310 kcal (2) G-P(sol) polarization free energy of solvation -34.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds