Wall clock time and date at job start Tue Mar 31 2020 14:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31918 * 120.17248 * 2 1 4 4 N 1.28278 * 122.32471 * 180.27559 * 3 2 1 5 5 C 1.31919 * 122.52085 * 359.71238 * 4 3 2 6 6 C 1.38488 * 119.97237 * 0.02562 * 5 4 3 7 7 C 1.39742 * 120.17407 * 179.72822 * 2 1 3 8 8 C 1.48096 * 121.14614 * 0.02670 * 7 2 1 9 9 O 1.21532 * 120.00080 * 4.12379 * 8 7 2 10 10 N 1.34776 * 120.00152 * 184.12664 * 8 7 2 11 11 C 1.39835 * 120.00440 * 184.73701 * 10 8 7 12 12 C 1.38952 * 120.04977 * 144.75973 * 11 10 8 13 13 C 1.38114 * 120.03874 * 179.97438 * 12 11 10 14 14 C 1.38217 * 120.12956 * 359.72691 * 13 12 11 15 15 C 1.38777 * 120.08569 * 0.55210 * 14 13 12 16 16 O 1.35896 * 120.01603 * 179.71829 * 15 14 13 17 17 C 1.42897 * 117.00223 * 359.72803 * 16 15 14 18 18 C 1.52997 * 109.46844 * 179.97438 * 17 16 15 19 19 C 1.50708 * 109.46956 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99682 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99919 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99589 * 179.97438 * 21 19 18 23 23 Si 1.86791 * 120.00057 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47406 * 90.00189 * 23 21 19 25 25 H 1.48501 * 109.47280 * 210.00146 * 23 21 19 26 26 H 1.48502 * 109.47404 * 330.00162 * 23 21 19 27 27 C 1.38624 * 119.95796 * 359.45091 * 15 14 13 28 28 H 1.09000 * 109.47606 * 263.27435 * 1 2 3 29 29 H 1.09001 * 109.46908 * 23.27757 * 1 2 3 30 30 H 1.08998 * 109.47054 * 143.27607 * 1 2 3 31 31 H 1.07999 * 120.01341 * 179.97438 * 5 4 3 32 32 H 1.08009 * 121.09192 * 180.02562 * 6 5 4 33 33 H 0.97002 * 119.99999 * 4.73012 * 10 8 7 34 34 H 1.08007 * 119.97546 * 359.96365 * 12 11 10 35 35 H 1.08003 * 119.93141 * 180.02562 * 13 12 11 36 36 H 1.07997 * 119.95913 * 180.29560 * 14 13 12 37 37 H 1.09001 * 109.47043 * 299.99972 * 17 16 15 38 38 H 1.09006 * 109.46885 * 60.00040 * 17 16 15 39 39 H 1.09001 * 109.47307 * 299.99846 * 18 17 16 40 40 H 1.08993 * 109.47484 * 60.00075 * 18 17 16 41 41 H 0.97003 * 120.00002 * 180.02562 * 22 21 19 42 42 H 1.07997 * 120.05795 * 180.29876 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1700 1.1404 0.0000 4 7 3.4519 1.1886 -0.0052 5 6 4.2024 0.1037 -0.0054 6 6 3.6094 -1.1478 -0.0003 7 6 2.2094 -1.2081 0.0057 8 6 1.4986 -2.5073 0.0113 9 8 0.2861 -2.5370 -0.0647 10 7 2.1965 -3.6569 0.1008 11 6 1.5354 -4.8854 0.0064 12 6 2.1548 -5.9630 -0.6147 13 6 1.5018 -7.1765 -0.7073 14 6 0.2336 -7.3241 -0.1778 15 6 -0.3923 -6.2498 0.4385 16 8 -1.6415 -6.3949 0.9535 17 6 -2.2532 -7.6793 0.8198 18 6 -3.6448 -7.6500 1.4550 19 6 -4.2897 -9.0049 1.3145 20 1 -3.7601 -9.8065 0.8211 21 6 -5.5563 -9.2207 1.8149 22 7 -6.1192 -10.4029 1.6918 23 14 -6.4724 -7.8341 2.6676 24 1 -7.2664 -7.0765 1.6670 25 1 -7.3824 -8.4005 3.6954 26 1 -5.4970 -6.9228 3.3182 27 6 0.2597 -5.0301 0.5334 28 1 -0.3634 -0.1204 1.0206 29 1 -0.3633 0.9440 -0.4061 30 1 -0.3633 -0.8237 -0.6145 31 1 5.2788 0.1915 -0.0103 32 1 4.2064 -2.0479 0.0001 33 1 3.1575 -3.6320 0.2305 34 1 3.1475 -5.8515 -1.0255 35 1 1.9851 -8.0131 -1.1900 36 1 -0.2726 -8.2756 -0.2475 37 1 -2.3410 -7.9317 -0.2370 38 1 -1.6404 -8.4277 1.3225 39 1 -3.5567 -7.3978 2.5117 40 1 -4.2578 -6.9016 0.9528 41 1 -7.0104 -10.5547 2.0435 42 1 -0.2239 -4.1943 1.0170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269895045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:25 Heat of formation + Delta-G solvation = -6.222091 kcal Electronic energy + Delta-G solvation = -25961.751552 eV Core-core repulsion = 22100.107016 eV Total energy + Delta-G solvation = -3861.644536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.58831 -41.50702 -40.51989 -38.55149 -36.09405 -35.38653 -34.90423 -34.27895 -32.94486 -31.21486 -30.45834 -29.22061 -27.20630 -26.76509 -24.47602 -24.06932 -23.37291 -22.63995 -21.64099 -20.00146 -19.28928 -18.91664 -18.35098 -17.29800 -17.05074 -16.90736 -16.86333 -16.80036 -16.66025 -16.41301 -16.07430 -15.64984 -15.04797 -14.82802 -14.51995 -14.49533 -14.41397 -14.26345 -13.91438 -13.56290 -13.35391 -13.25895 -12.77846 -12.63411 -12.43450 -12.16309 -12.10229 -11.83047 -11.74226 -11.50508 -11.45491 -11.38349 -11.23528 -10.90354 -10.83327 -10.58273 -9.48135 -9.06408 -8.36722 -6.42928 -0.88842 -0.23285 0.24014 0.47416 1.34034 1.35274 1.47957 1.51109 1.59756 2.31171 2.33071 2.43570 2.79825 2.88095 2.98167 3.14827 3.22951 3.52190 3.68701 3.90147 4.14353 4.17666 4.20125 4.21283 4.23835 4.35814 4.39858 4.43205 4.54675 4.57957 4.64053 4.68298 4.87979 5.05019 5.08582 5.19012 5.22345 5.27570 5.30285 5.39411 5.47117 5.52943 5.85738 6.14430 6.17600 6.50767 6.62310 6.85036 7.22169 7.53092 8.78712 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.002346 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.613935 B =11931.916149 C =13369.995616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.115 3.885 3 N -0.278 5.278 4 N -0.254 5.254 5 C 0.037 3.963 6 C -0.050 4.050 7 C -0.148 4.148 8 C 0.561 3.439 9 O -0.527 6.527 10 N -0.642 5.642 11 C 0.174 3.826 12 C -0.166 4.166 13 C -0.056 4.056 14 C -0.232 4.232 15 C 0.123 3.877 16 O -0.340 6.340 17 C 0.088 3.912 18 C -0.008 4.008 19 C -0.535 4.535 20 H 0.046 0.954 21 C 0.015 3.985 22 N -0.940 5.940 23 Si 0.946 3.054 24 H -0.266 1.266 25 H -0.277 1.277 26 H -0.254 1.254 27 C -0.179 4.179 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.226 0.774 32 H 0.208 0.792 33 H 0.433 0.567 34 H 0.173 0.827 35 H 0.163 0.837 36 H 0.128 0.872 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.026 0.974 40 H 0.023 0.977 41 H 0.270 0.730 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.893 17.551 -5.125 34.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.031 4.031 3 N -0.120 5.120 4 N -0.094 5.094 5 C -0.128 4.128 6 C -0.079 4.079 7 C -0.162 4.162 8 C 0.349 3.651 9 O -0.403 6.403 10 N -0.289 5.289 11 C 0.080 3.920 12 C -0.185 4.185 13 C -0.074 4.074 14 C -0.252 4.252 15 C 0.077 3.923 16 O -0.254 6.254 17 C 0.013 3.987 18 C -0.045 4.045 19 C -0.572 4.572 20 H 0.064 0.936 21 C -0.183 4.183 22 N -0.579 5.579 23 Si 0.769 3.231 24 H -0.191 1.191 25 H -0.203 1.203 26 H -0.177 1.177 27 C -0.200 4.200 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.242 0.758 32 H 0.225 0.775 33 H 0.275 0.725 34 H 0.190 0.810 35 H 0.181 0.819 36 H 0.146 0.854 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 27.706 19.301 -5.045 34.141 hybrid contribution -0.741 -1.520 0.465 1.753 sum 26.966 17.782 -4.581 32.624 Atomic orbital electron populations 1.21033 0.86715 1.04819 1.04524 1.23237 0.99850 0.89184 0.90788 1.73104 1.02433 1.24589 1.11874 1.72785 0.99470 1.30208 1.06977 1.25074 1.04623 0.88257 0.94843 1.23249 0.92322 1.02404 0.89974 1.20836 0.96100 0.93496 1.05779 1.18249 0.86800 0.83867 0.76204 1.90826 1.14764 1.86716 1.48026 1.43005 1.12476 1.02413 1.71044 1.17306 0.91738 0.85954 0.97012 1.21147 1.03028 0.91667 1.02701 1.21134 0.92329 0.98260 0.95712 1.21571 0.99070 0.98690 1.05825 1.19219 0.84605 0.94665 0.93810 1.86043 1.27934 1.36123 1.75279 1.22689 0.94013 0.81507 1.00472 1.19456 0.91941 0.96269 0.96875 1.21089 1.01424 0.96287 1.38441 0.93617 1.25835 0.98180 0.98202 0.96126 1.70013 1.16342 1.24068 1.47505 0.85726 0.78847 0.79486 0.79062 1.19123 1.20252 1.17740 1.20395 0.96832 0.96071 1.06712 0.89646 0.89894 0.88288 0.75775 0.77506 0.72515 0.80992 0.81939 0.85447 0.92251 0.91925 0.95584 0.95898 0.92074 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.32 9.12 71.24 0.65 -1.67 16 2 C 0.11 2.28 6.91 42.91 0.30 2.57 16 3 N -0.28 -6.09 11.42 -46.94 -0.54 -6.62 16 4 N -0.25 -4.49 11.48 -57.34 -0.66 -5.14 16 5 C 0.04 0.26 11.30 84.74 0.96 1.22 16 6 C -0.05 -0.25 9.68 22.79 0.22 -0.03 16 7 C -0.15 -2.14 5.92 -19.84 -0.12 -2.25 16 8 C 0.56 10.29 7.61 86.86 0.66 10.95 16 9 O -0.53 -14.44 10.85 -3.82 -0.04 -14.48 16 10 N -0.64 -8.16 5.28 -305.93 -1.62 -9.78 16 11 C 0.17 3.49 6.29 38.16 0.24 3.73 16 12 C -0.17 -2.47 9.96 22.41 0.22 -2.24 16 13 C -0.06 -1.04 10.03 22.23 0.22 -0.82 16 14 C -0.23 -6.42 9.04 22.39 0.20 -6.22 16 15 C 0.12 4.14 6.68 22.49 0.15 4.29 16 16 O -0.34 -13.84 10.13 -92.38 -0.94 -14.78 16 17 C 0.09 3.68 4.68 71.98 0.34 4.02 16 18 C -0.01 -0.39 4.41 29.85 0.13 -0.26 16 19 C -0.53 -30.84 9.66 25.60 0.25 -30.59 16 20 H 0.05 2.82 7.99 -2.91 -0.02 2.79 16 21 C 0.01 0.88 5.47 84.66 0.46 1.34 16 22 N -0.94 -58.16 13.96 21.45 0.30 -57.86 16 23 Si 0.95 44.99 27.47 68.60 1.88 46.88 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 26 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 27 C -0.18 -5.36 8.63 22.49 0.19 -5.17 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.10 2.31 5.69 -2.39 -0.01 2.30 16 31 H 0.23 -0.56 8.06 -2.91 -0.02 -0.58 16 32 H 0.21 -1.26 6.67 -2.91 -0.02 -1.28 16 33 H 0.43 0.98 7.06 -92.71 -0.65 0.33 16 34 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 35 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.13 3.60 6.29 -2.91 -0.02 3.59 16 37 H 0.06 2.41 7.67 -2.39 -0.02 2.40 16 38 H 0.06 2.51 7.65 -2.38 -0.02 2.49 16 39 H 0.03 1.28 7.20 -2.39 -0.02 1.26 16 40 H 0.02 1.12 7.57 -2.39 -0.02 1.10 16 41 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 42 H 0.12 4.17 6.23 -2.91 -0.02 4.15 16 Total: -1.00 -81.87 355.53 3.84 -78.03 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: 0.37 Total: 4.89 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 5.08 Total: -21.13 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -2.51 Total: -79.41 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.98 Total: -29.26 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.88 kcal Total: -81.87 3.84 -78.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269895045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.807 kcal (2) G-P(sol) polarization free energy of solvation -81.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds