Wall clock time and date at job start Tue Mar 31 2020 15:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35236 * 126.07282 * 2 1 4 4 C 1.40407 * 107.87008 * 179.97438 * 3 2 1 5 5 N 1.40152 * 125.97453 * 179.97438 * 4 3 2 6 6 C 1.34775 * 120.00026 * 359.97438 * 5 4 3 7 7 O 1.21290 * 120.00063 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00340 * 180.02562 * 6 5 4 9 9 H 1.09001 * 110.83061 * 56.29108 * 8 6 5 10 10 C 1.54709 * 110.96859 * 292.56785 * 8 6 5 11 11 O 1.43768 * 102.78633 * 216.57522 * 10 8 6 12 12 C 1.36145 * 109.21937 * 27.81337 * 11 10 8 13 13 C 1.39278 * 129.88836 * 161.41376 * 12 11 10 14 14 C 1.37935 * 120.23832 * 178.96117 * 13 12 11 15 15 C 1.38280 * 120.35047 * 0.03457 * 14 13 12 16 16 C 1.38350 * 119.76749 * 0.20077 * 15 14 13 17 17 C 1.37743 * 119.97981 * 359.93096 * 16 15 14 18 18 N 1.31215 * 108.05179 * 0.22053 * 4 3 2 19 19 N 1.34974 * 126.06889 * 179.97438 * 2 1 3 20 20 C 1.46498 * 125.97259 * 0.04607 * 19 2 1 21 21 C 1.50701 * 109.47372 * 89.99753 * 20 19 2 22 22 H 1.08003 * 119.99902 * 359.97438 * 21 20 19 23 23 C 1.37879 * 119.99966 * 179.97438 * 21 20 19 24 24 N 1.31508 * 120.00029 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00010 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47005 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47061 * 119.99773 * 25 23 21 28 28 H 1.48494 * 109.47062 * 240.00283 * 25 23 21 29 29 H 1.08995 * 109.47354 * 90.02635 * 1 2 3 30 30 H 1.08996 * 109.46894 * 210.03205 * 1 2 3 31 31 H 1.09003 * 109.46809 * 330.02489 * 1 2 3 32 32 H 1.08003 * 126.06459 * 359.96780 * 3 2 1 33 33 H 0.97001 * 120.00019 * 179.97438 * 5 4 3 34 34 H 1.09003 * 110.74970 * 334.89893 * 10 8 6 35 35 H 1.09006 * 110.75020 * 98.06519 * 10 8 6 36 36 H 1.08007 * 119.88109 * 359.23709 * 13 12 11 37 37 H 1.08003 * 119.82231 * 180.02562 * 14 13 12 38 38 H 1.07999 * 120.12141 * 180.18326 * 15 14 13 39 39 H 1.08007 * 120.01211 * 179.97438 * 16 15 14 40 40 H 1.09001 * 109.47361 * 209.99879 * 20 19 2 41 41 H 1.08997 * 109.47501 * 329.99366 * 20 19 2 42 42 H 0.97004 * 120.00018 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6545 0.0006 5 7 4.7735 1.4747 0.0003 6 6 4.6368 2.8155 -0.0012 7 8 3.5303 3.3123 -0.0027 8 6 5.8587 3.6976 -0.0021 9 1 6.5039 3.4652 -0.8493 10 6 6.6320 3.5736 1.3321 11 8 7.1015 4.9143 1.5535 12 6 6.2470 5.7922 0.9596 13 6 6.0757 7.1573 1.1764 14 6 5.1530 7.8677 0.4371 15 6 4.3896 7.2318 -0.5247 16 6 4.5502 5.8750 -0.7428 17 6 5.4692 5.1632 -0.0037 18 7 3.6337 -0.6577 -0.0039 19 7 2.3017 -1.0910 0.0005 20 6 1.8500 -2.4846 0.0002 21 6 1.6960 -2.9625 -1.4208 22 1 1.9125 -2.2947 -2.2415 23 6 1.2787 -4.2522 -1.6729 24 7 1.0156 -5.0654 -0.6735 25 14 1.0870 -4.8443 -3.4342 26 1 1.4432 -3.7454 -4.3674 27 1 1.9867 -6.0024 -3.6678 28 1 -0.3205 -5.2559 -3.6677 29 1 -0.3634 -0.0005 -1.0276 30 1 -0.3633 -0.8897 0.5143 31 1 -0.3633 0.8902 0.5135 32 1 1.9720 2.1210 -0.0005 33 1 5.6584 1.0775 0.0011 34 1 5.9667 3.2596 2.1364 35 1 7.4674 2.8806 1.2313 36 1 6.6707 7.6624 1.9230 37 1 5.0260 8.9261 0.6104 38 1 3.6703 7.7921 -1.1035 39 1 3.9558 5.3743 -1.4927 40 1 2.5843 -3.1047 0.5144 41 1 0.8911 -2.5559 0.5134 42 1 0.7216 -5.9727 -0.8510 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271152343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:43 Heat of formation + Delta-G solvation = 43.658230 kcal Electronic energy + Delta-G solvation = -26616.206619 eV Core-core repulsion = 22756.725057 eV Total energy + Delta-G solvation = -3859.481563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.73193 -40.66979 -39.10573 -37.63774 -34.96112 -33.52460 -33.04773 -31.50141 -30.89736 -30.28024 -29.55266 -26.77908 -26.40398 -24.66610 -23.37525 -22.70885 -22.30628 -20.98564 -19.89957 -19.22459 -17.76979 -17.28013 -16.92802 -16.72918 -16.19980 -15.84280 -15.54311 -15.30914 -15.18692 -14.41179 -14.30891 -14.06482 -13.79327 -13.60620 -13.38580 -13.08408 -12.89033 -12.52998 -12.51206 -12.33206 -12.15677 -11.93559 -11.70003 -11.45051 -11.24294 -11.12671 -11.04472 -10.88276 -10.49686 -10.29273 -10.01916 -9.68152 -9.57199 -9.11711 -8.68428 -8.41951 -8.01473 -7.53665 -6.29406 -4.36993 1.03271 1.18818 2.14684 2.61109 2.82345 2.92579 3.17525 3.25600 3.31279 3.49923 3.60931 3.80035 3.89848 4.19350 4.26909 4.49177 4.60069 4.77606 4.86720 5.03787 5.04625 5.15604 5.17826 5.22071 5.38315 5.43105 5.64278 5.78095 5.85493 6.06629 6.07614 6.16240 6.19497 6.29278 6.34868 6.38437 6.46089 6.63793 6.87601 6.90761 7.00705 7.34800 7.54987 7.63332 7.84516 7.98671 8.10350 8.57891 8.70759 9.29552 10.78007 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024971 B = 0.002416 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.030273 B =11588.825080 C =11879.788250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.093 3.907 3 C -0.290 4.290 4 C 0.261 3.739 5 N -0.629 5.629 6 C 0.528 3.472 7 O -0.499 6.499 8 C -0.096 4.096 9 H 0.126 0.874 10 C 0.063 3.937 11 O -0.299 6.299 12 C 0.107 3.893 13 C -0.143 4.143 14 C -0.082 4.082 15 C -0.151 4.151 16 C -0.039 4.039 17 C -0.153 4.153 18 N -0.318 5.318 19 N -0.315 5.315 20 C 0.258 3.742 21 C -0.535 4.535 22 H 0.065 0.935 23 C 0.065 3.935 24 N -0.891 5.891 25 Si 0.906 3.094 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.280 1.280 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.159 0.841 33 H 0.410 0.590 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.712 21.400 2.893 23.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.039 4.039 3 C -0.321 4.321 4 C 0.009 3.991 5 N -0.276 5.276 6 C 0.312 3.688 7 O -0.371 6.371 8 C -0.118 4.118 9 H 0.144 0.856 10 C -0.012 4.012 11 O -0.213 6.213 12 C 0.062 3.938 13 C -0.161 4.161 14 C -0.100 4.100 15 C -0.169 4.169 16 C -0.057 4.057 17 C -0.154 4.154 18 N -0.149 5.149 19 N -0.098 5.098 20 C 0.140 3.860 21 C -0.574 4.574 22 H 0.083 0.917 23 C -0.138 4.138 24 N -0.529 5.529 25 Si 0.733 3.267 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.176 0.824 33 H 0.246 0.754 34 H 0.103 0.897 35 H 0.137 0.863 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.741 20.432 3.077 22.436 hybrid contribution -0.128 -0.329 -1.062 1.119 sum 8.613 20.103 2.015 21.963 Atomic orbital electron populations 1.20341 0.87822 1.02876 1.03226 1.21076 0.94956 0.87135 1.00738 1.21228 0.89692 0.99791 1.21403 1.18960 0.87119 0.89609 1.03451 1.42447 1.07698 1.04883 1.72599 1.20011 0.90616 0.81288 0.76858 1.90674 1.26169 1.73647 1.46631 1.21510 0.96249 0.92554 1.01446 0.85643 1.23833 0.99209 0.83345 0.94824 1.86848 1.45400 1.15415 1.73640 1.19535 0.90470 0.91871 0.91963 1.20213 1.02085 0.90528 1.03315 1.20897 0.94560 0.99746 0.94814 1.21073 1.01416 0.94246 1.00171 1.20395 0.94465 0.93333 0.97538 1.20136 1.01784 0.93251 1.00264 1.77256 1.00013 1.08422 1.29204 1.49015 1.00936 1.07845 1.51978 1.19713 0.96013 0.71242 0.99020 1.21345 1.46783 0.97945 0.91329 0.91721 1.24930 0.94654 0.96070 0.98152 1.69924 1.44927 1.07087 1.30985 0.86300 0.77905 0.78810 0.83674 1.19587 1.20634 1.20607 0.90366 0.90806 0.90795 0.82369 0.75440 0.89714 0.86334 0.85421 0.85149 0.85350 0.85325 0.92966 0.92739 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.11 36.01 0.36 -1.05 16 2 C 0.09 1.91 6.92 -82.28 -0.57 1.34 16 3 C -0.29 -5.81 9.52 -39.83 -0.38 -6.19 16 4 C 0.26 5.10 8.11 -154.40 -1.25 3.85 16 5 N -0.63 -9.04 5.45 -11.13 -0.06 -9.10 16 6 C 0.53 7.17 7.03 -10.99 -0.08 7.09 16 7 O -0.50 -8.37 12.31 5.55 0.07 -8.30 16 8 C -0.10 -0.97 3.52 -91.56 -0.32 -1.29 16 9 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 10 C 0.06 0.55 7.54 38.06 0.29 0.84 16 11 O -0.30 -3.25 11.11 -20.20 -0.22 -3.47 16 12 C 0.11 1.20 7.03 -38.96 -0.27 0.93 16 13 C -0.14 -1.38 10.06 -39.31 -0.40 -1.77 16 14 C -0.08 -0.70 10.02 -39.68 -0.40 -1.09 16 15 C -0.15 -1.41 10.07 -39.52 -0.40 -1.80 16 16 C -0.04 -0.44 9.07 -39.72 -0.36 -0.80 16 17 C -0.15 -1.76 5.39 -104.10 -0.56 -2.33 16 18 N -0.32 -7.15 12.59 31.44 0.40 -6.75 16 19 N -0.32 -7.35 3.59 -58.33 -0.21 -7.56 16 20 C 0.26 6.52 5.99 -5.19 -0.03 6.48 16 21 C -0.54 -14.58 9.39 -34.44 -0.32 -14.90 16 22 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 23 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 24 N -0.89 -24.80 13.29 55.43 0.74 -24.06 16 25 Si 0.91 20.90 29.54 -169.99 -5.02 15.88 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.25 7.07 -51.93 -0.37 0.88 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.16 3.08 5.92 -52.48 -0.31 2.77 16 33 H 0.41 4.54 8.82 -40.82 -0.36 4.18 16 34 H 0.08 0.77 7.91 -51.93 -0.41 0.36 16 35 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 38 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.13 1.46 7.81 -52.48 -0.41 1.05 16 40 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.05 1.36 7.04 -51.93 -0.37 1.00 16 42 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 360.00 15.07 5.43 5.43 Total: -1.00 -33.07 360.00 -8.83 -41.90 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.15 Total: 5.07 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -4.79 Total: -9.03 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.86 Total: -47.48 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.16 Total: -11.77 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.07 -8.83 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271152343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.561 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds