Wall clock time and date at job start Tue Mar 31 2020 15:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35236 * 126.07282 * 2 1 4 4 C 1.40407 * 107.87008 * 179.97438 * 3 2 1 5 5 N 1.40152 * 125.97453 * 179.97438 * 4 3 2 6 6 C 1.34775 * 120.00026 * 359.97438 * 5 4 3 7 7 O 1.21290 * 120.00063 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00340 * 180.02562 * 6 5 4 9 9 H 1.09001 * 110.83061 * 56.29108 * 8 6 5 10 10 C 1.54709 * 110.96859 * 292.56785 * 8 6 5 11 11 O 1.43768 * 102.78633 * 216.57522 * 10 8 6 12 12 C 1.36145 * 109.21937 * 27.81337 * 11 10 8 13 13 C 1.39278 * 129.88836 * 161.41376 * 12 11 10 14 14 C 1.37935 * 120.23832 * 178.96117 * 13 12 11 15 15 C 1.38280 * 120.35047 * 0.03457 * 14 13 12 16 16 C 1.38350 * 119.76749 * 0.20077 * 15 14 13 17 17 C 1.37743 * 119.97981 * 359.93096 * 16 15 14 18 18 N 1.31215 * 108.05179 * 0.22053 * 4 3 2 19 19 N 1.34974 * 126.06889 * 179.97438 * 2 1 3 20 20 C 1.46498 * 125.97259 * 0.04607 * 19 2 1 21 21 C 1.50701 * 109.47372 * 89.99753 * 20 19 2 22 22 H 1.08003 * 119.99902 * 359.97438 * 21 20 19 23 23 C 1.37879 * 119.99966 * 179.97438 * 21 20 19 24 24 N 1.31508 * 120.00029 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00010 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47005 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47061 * 119.99773 * 25 23 21 28 28 H 1.48494 * 109.47062 * 240.00283 * 25 23 21 29 29 H 1.08995 * 109.47354 * 90.02635 * 1 2 3 30 30 H 1.08996 * 109.46894 * 210.03205 * 1 2 3 31 31 H 1.09003 * 109.46809 * 330.02489 * 1 2 3 32 32 H 1.08003 * 126.06459 * 359.96780 * 3 2 1 33 33 H 0.97001 * 120.00019 * 179.97438 * 5 4 3 34 34 H 1.09003 * 110.74970 * 334.89893 * 10 8 6 35 35 H 1.09006 * 110.75020 * 98.06519 * 10 8 6 36 36 H 1.08007 * 119.88109 * 359.23709 * 13 12 11 37 37 H 1.08003 * 119.82231 * 180.02562 * 14 13 12 38 38 H 1.07999 * 120.12141 * 180.18326 * 15 14 13 39 39 H 1.08007 * 120.01211 * 179.97438 * 16 15 14 40 40 H 1.09001 * 109.47361 * 209.99879 * 20 19 2 41 41 H 1.08997 * 109.47501 * 329.99366 * 20 19 2 42 42 H 0.97004 * 120.00018 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6545 0.0006 5 7 4.7735 1.4747 0.0003 6 6 4.6368 2.8155 -0.0012 7 8 3.5303 3.3123 -0.0027 8 6 5.8587 3.6976 -0.0021 9 1 6.5039 3.4652 -0.8493 10 6 6.6320 3.5736 1.3321 11 8 7.1015 4.9143 1.5535 12 6 6.2470 5.7922 0.9596 13 6 6.0757 7.1573 1.1764 14 6 5.1530 7.8677 0.4371 15 6 4.3896 7.2318 -0.5247 16 6 4.5502 5.8750 -0.7428 17 6 5.4692 5.1632 -0.0037 18 7 3.6337 -0.6577 -0.0039 19 7 2.3017 -1.0910 0.0005 20 6 1.8500 -2.4846 0.0002 21 6 1.6960 -2.9625 -1.4208 22 1 1.9125 -2.2947 -2.2415 23 6 1.2787 -4.2522 -1.6729 24 7 1.0156 -5.0654 -0.6735 25 14 1.0870 -4.8443 -3.4342 26 1 1.4432 -3.7454 -4.3674 27 1 1.9867 -6.0024 -3.6678 28 1 -0.3205 -5.2559 -3.6677 29 1 -0.3634 -0.0005 -1.0276 30 1 -0.3633 -0.8897 0.5143 31 1 -0.3633 0.8902 0.5135 32 1 1.9720 2.1210 -0.0005 33 1 5.6584 1.0775 0.0011 34 1 5.9667 3.2596 2.1364 35 1 7.4674 2.8806 1.2313 36 1 6.6707 7.6624 1.9230 37 1 5.0260 8.9261 0.6104 38 1 3.6703 7.7921 -1.1035 39 1 3.9558 5.3743 -1.4927 40 1 2.5843 -3.1047 0.5144 41 1 0.8911 -2.5559 0.5134 42 1 0.7216 -5.9727 -0.8510 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271152343.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:42 Heat of formation + Delta-G solvation = 23.560871 kcal Electronic energy + Delta-G solvation = -26617.078106 eV Core-core repulsion = 22756.725057 eV Total energy + Delta-G solvation = -3860.353049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.65681 -42.10985 -40.30992 -38.36037 -36.39926 -35.34730 -34.03448 -32.97535 -32.62216 -31.03737 -30.35790 -28.60477 -27.90969 -25.77067 -24.78165 -23.84261 -23.14840 -22.13018 -21.33327 -20.64274 -18.83110 -18.52920 -18.30956 -17.90134 -17.45242 -17.04797 -16.65386 -16.51749 -16.42803 -16.04350 -15.69809 -15.14229 -14.81428 -14.65612 -14.38273 -14.34452 -14.10393 -13.84283 -13.74432 -13.63649 -13.57547 -13.18244 -13.07281 -12.87420 -12.69175 -12.62410 -12.27666 -12.11734 -11.93145 -11.77804 -11.58167 -11.38007 -10.96718 -10.74767 -9.86999 -9.62369 -9.19562 -9.16441 -8.34414 -6.51782 0.28245 0.42694 0.83278 1.25366 1.34744 1.36352 1.38751 1.51085 2.11100 2.17368 2.26569 2.36649 2.79931 2.95670 3.08197 3.42591 3.54627 3.86471 3.88205 4.04460 4.13666 4.23800 4.40140 4.45479 4.46598 4.51339 4.53421 4.69057 4.69398 4.74411 4.87157 4.95137 4.97494 5.06137 5.10845 5.22165 5.35734 5.45896 5.52461 5.57399 5.62947 5.79392 5.89062 6.16379 6.21547 6.22954 6.60285 6.90247 7.04493 7.19296 8.71932 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.024971 B = 0.002416 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.030273 B =11588.825080 C =11879.788250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.087 3.913 3 C -0.299 4.299 4 C 0.272 3.728 5 N -0.619 5.619 6 C 0.532 3.468 7 O -0.530 6.530 8 C -0.086 4.086 9 H 0.154 0.846 10 C 0.064 3.936 11 O -0.308 6.308 12 C 0.087 3.913 13 C -0.150 4.150 14 C -0.078 4.078 15 C -0.154 4.154 16 C -0.060 4.060 17 C -0.175 4.175 18 N -0.354 5.354 19 N -0.342 5.342 20 C 0.275 3.725 21 C -0.551 4.551 22 H 0.049 0.951 23 C 0.023 3.977 24 N -0.918 5.918 25 Si 0.971 3.029 26 H -0.274 1.274 27 H -0.274 1.274 28 H -0.267 1.267 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.166 0.834 33 H 0.427 0.573 34 H 0.077 0.923 35 H 0.156 0.844 36 H 0.145 0.855 37 H 0.163 0.837 38 H 0.148 0.852 39 H 0.118 0.882 40 H 0.025 0.975 41 H 0.052 0.948 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.305 23.054 2.331 24.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.043 4.043 3 C -0.330 4.330 4 C 0.018 3.982 5 N -0.269 5.269 6 C 0.319 3.681 7 O -0.404 6.404 8 C -0.107 4.107 9 H 0.171 0.829 10 C -0.011 4.011 11 O -0.222 6.222 12 C 0.043 3.957 13 C -0.168 4.168 14 C -0.096 4.096 15 C -0.172 4.172 16 C -0.079 4.079 17 C -0.176 4.176 18 N -0.185 5.185 19 N -0.125 5.125 20 C 0.156 3.844 21 C -0.590 4.590 22 H 0.067 0.933 23 C -0.178 4.178 24 N -0.556 5.556 25 Si 0.795 3.205 26 H -0.199 1.199 27 H -0.200 1.200 28 H -0.192 1.192 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.183 0.817 33 H 0.265 0.735 34 H 0.095 0.905 35 H 0.173 0.827 36 H 0.163 0.837 37 H 0.180 0.820 38 H 0.166 0.834 39 H 0.136 0.864 40 H 0.043 0.957 41 H 0.070 0.930 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.359 22.104 2.526 24.136 hybrid contribution -0.290 -0.678 -0.842 1.119 sum 9.068 21.426 1.684 23.327 Atomic orbital electron populations 1.20473 0.85416 1.04211 1.03961 1.21743 0.96653 0.86495 0.99408 1.21414 0.90022 0.99838 1.21698 1.19294 0.88738 0.89216 1.00945 1.42557 1.07129 1.04819 1.72400 1.20702 0.91441 0.80835 0.75164 1.90649 1.27895 1.74072 1.47795 1.21544 0.94724 0.90970 1.03431 0.82910 1.24039 1.00297 0.83259 0.93524 1.86835 1.45520 1.16051 1.73803 1.19810 0.90931 0.92690 0.92307 1.20598 1.02338 0.90192 1.03680 1.21288 0.93373 1.01219 0.93675 1.21389 1.01703 0.93707 1.00409 1.20516 0.94959 0.94424 0.97954 1.20347 1.02411 0.93947 1.00880 1.77178 1.00003 1.09913 1.31377 1.48803 1.01797 1.07540 1.54322 1.19259 0.94964 0.72380 0.97819 1.21447 1.47485 0.98319 0.91723 0.93291 1.25727 0.93962 0.95950 1.02198 1.70003 1.45117 1.07553 1.32931 0.85305 0.78474 0.78095 0.78581 1.19857 1.19962 1.19225 0.89790 0.91251 0.87633 0.81681 0.73474 0.90522 0.82653 0.83698 0.81971 0.83380 0.86367 0.95657 0.93009 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.73 10.11 71.24 0.72 -2.01 16 2 C 0.09 3.64 6.92 41.38 0.29 3.93 16 3 C -0.30 -11.97 9.52 22.11 0.21 -11.76 16 4 C 0.27 10.67 8.11 133.33 1.08 11.75 16 5 N -0.62 -17.32 5.45 -307.53 -1.68 -18.99 16 6 C 0.53 13.99 7.03 87.66 0.62 14.61 16 7 O -0.53 -17.66 12.31 -3.06 -0.04 -17.70 16 8 C -0.09 -1.59 3.52 -11.40 -0.04 -1.63 16 9 H 0.15 1.97 8.14 -2.39 -0.02 1.95 16 10 C 0.06 0.98 7.54 72.56 0.55 1.53 16 11 O -0.31 -6.18 11.11 -95.20 -1.06 -7.23 16 12 C 0.09 1.86 7.03 22.67 0.16 2.01 16 13 C -0.15 -2.60 10.06 22.45 0.23 -2.37 16 14 C -0.08 -1.14 10.02 22.21 0.22 -0.92 16 15 C -0.15 -2.63 10.07 22.31 0.22 -2.41 16 16 C -0.06 -1.32 9.07 22.18 0.20 -1.12 16 17 C -0.17 -3.86 5.39 -19.53 -0.11 -3.97 16 18 N -0.35 -16.23 12.59 -54.46 -0.69 -16.92 16 19 N -0.34 -16.38 3.59 -338.45 -1.22 -17.59 16 20 C 0.27 14.40 5.99 85.63 0.51 14.91 16 21 C -0.55 -30.70 9.39 25.60 0.24 -30.46 16 22 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 23 C 0.02 1.23 5.46 84.66 0.46 1.69 16 24 N -0.92 -51.47 13.29 21.45 0.28 -51.18 16 25 Si 0.97 42.77 29.54 68.60 2.03 44.80 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 28 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 29 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.07 2.35 7.07 -2.39 -0.02 2.33 16 31 H 0.11 2.77 8.14 -2.39 -0.02 2.76 16 32 H 0.17 6.38 5.92 -2.91 -0.02 6.37 16 33 H 0.43 8.87 8.82 -92.71 -0.82 8.06 16 34 H 0.08 1.30 7.91 -2.39 -0.02 1.29 16 35 H 0.16 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 38 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.12 2.73 7.81 -2.91 -0.02 2.71 16 40 H 0.03 1.43 8.14 -2.39 -0.02 1.42 16 41 H 0.05 2.69 7.04 -2.39 -0.02 2.68 16 42 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -72.73 360.00 3.45 -69.28 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.25 Total: 21.75 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: 5.57 Total: -6.21 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -3.29 Total: -104.68 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -1.09 Total: -24.94 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -72.73 3.45 -69.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271152343.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.842 kcal (2) G-P(sol) polarization free energy of solvation -72.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds