Wall clock time and date at job start Tue Mar 31 2020 15:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35233 * 126.07133 * 2 1 4 4 C 1.40415 * 107.86897 * 180.02562 * 3 2 1 5 5 N 1.40159 * 125.97167 * 180.02562 * 4 3 2 6 6 C 1.34770 * 120.00186 * 0.02562 * 5 4 3 7 7 O 1.21293 * 120.00165 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00112 * 179.97438 * 6 5 4 9 9 H 1.09002 * 110.83443 * 297.73461 * 8 6 5 10 10 C 1.54708 * 110.94102 * 61.45137 * 8 6 5 11 11 O 1.43769 * 102.79275 * 92.79521 * 10 8 6 12 12 C 1.36128 * 109.28644 * 27.55279 * 11 10 8 13 13 C 1.39288 * 129.87652 * 161.44485 * 12 11 10 14 14 C 1.37929 * 120.24304 * 179.56047 * 13 12 11 15 15 C 1.38291 * 120.35164 * 0.02562 * 14 13 12 16 16 C 1.38349 * 119.76292 * 0.20649 * 15 14 13 17 17 C 1.37739 * 119.98087 * 359.96411 * 16 15 14 18 18 N 1.31215 * 108.04921 * 0.02562 * 4 3 2 19 19 N 1.34974 * 126.06806 * 180.02562 * 2 1 3 20 20 C 1.46506 * 125.97374 * 359.72146 * 19 2 1 21 21 C 1.50700 * 109.47258 * 89.99752 * 20 19 2 22 22 H 1.08001 * 119.99888 * 359.97438 * 21 20 19 23 23 C 1.37870 * 119.99592 * 179.97438 * 21 20 19 24 24 N 1.31521 * 119.99906 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00494 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47131 * 89.99644 * 25 23 21 27 27 H 1.48501 * 109.47380 * 210.00074 * 25 23 21 28 28 H 1.48508 * 109.46971 * 330.00113 * 25 23 21 29 29 H 1.09004 * 109.47457 * 269.97588 * 1 2 3 30 30 H 1.08998 * 109.47066 * 29.97734 * 1 2 3 31 31 H 1.09004 * 109.47571 * 149.97865 * 1 2 3 32 32 H 1.07997 * 126.06765 * 0.03628 * 3 2 1 33 33 H 0.97001 * 119.99524 * 179.97438 * 5 4 3 34 34 H 1.09005 * 110.75039 * 211.11873 * 10 8 6 35 35 H 1.09000 * 110.74955 * 334.46950 * 10 8 6 36 36 H 1.08004 * 119.87949 * 359.57489 * 13 12 11 37 37 H 1.08001 * 119.82676 * 180.02562 * 14 13 12 38 38 H 1.08003 * 120.11629 * 180.17299 * 15 14 13 39 39 H 1.08003 * 120.00804 * 179.97438 * 16 15 14 40 40 H 1.08995 * 109.46441 * 209.99792 * 20 19 2 41 41 H 1.08999 * 109.46814 * 329.99674 * 20 19 2 42 42 H 0.96998 * 120.00210 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6544 -0.0006 5 7 4.7735 1.4748 -0.0003 6 6 4.6367 2.8156 0.0012 7 8 3.5302 3.3124 0.0018 8 6 5.8586 3.6977 0.0021 9 1 6.4505 3.5392 0.9036 10 6 6.7111 3.4628 -1.2674 11 8 6.2114 4.4594 -2.1752 12 6 5.7267 5.5135 -1.4632 13 6 5.4687 6.8212 -1.8676 14 6 4.9630 7.7388 -0.9705 15 6 4.7081 7.3698 0.3376 16 6 4.9661 6.0742 0.7485 17 6 5.4744 5.1572 -0.1448 18 7 3.6336 -0.6577 -0.0015 19 7 2.3016 -1.0910 -0.0005 20 6 1.8499 -2.4847 0.0047 21 6 1.6894 -2.9660 -1.4144 22 1 1.9021 -2.3002 -2.2377 23 6 1.2710 -4.2562 -1.6614 24 7 1.1313 -4.6765 -2.8998 25 14 0.9037 -5.4080 -0.2374 26 1 -0.5257 -5.2821 0.1452 27 1 1.1852 -6.8073 -0.6471 28 1 1.7598 -5.0500 0.9222 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.9720 2.1210 0.0006 33 1 5.6584 1.0775 -0.0004 34 1 7.7683 3.6263 -1.0584 35 1 6.5452 2.4612 -1.6641 36 1 5.6651 7.1177 -2.8874 37 1 4.7651 8.7509 -1.2914 38 1 4.3095 8.0907 1.0361 39 1 4.7689 5.7818 1.7693 40 1 2.5866 -3.1034 0.5171 41 1 0.8933 -2.5546 0.5225 42 1 0.8373 -5.5844 -3.0737 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271152345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:47 Heat of formation + Delta-G solvation = 50.675022 kcal Electronic energy + Delta-G solvation = -26755.993533 eV Core-core repulsion = 22896.816242 eV Total energy + Delta-G solvation = -3859.177292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.77442 -40.70300 -39.04869 -37.61685 -34.98379 -33.49746 -33.02414 -31.56972 -31.15093 -30.29618 -29.57281 -27.20159 -26.45029 -24.71549 -23.22173 -22.53468 -22.19474 -21.06020 -19.89409 -19.33711 -17.72054 -17.16812 -17.12731 -16.86315 -16.37011 -15.96964 -15.67370 -15.34140 -15.03120 -14.49765 -14.29874 -13.95786 -13.81068 -13.64846 -13.31095 -13.21385 -12.83551 -12.59978 -12.46810 -12.37076 -12.08993 -12.02625 -11.94700 -11.58437 -11.43109 -11.21121 -11.05791 -10.83558 -10.59975 -10.06579 -9.99056 -9.72956 -9.60703 -9.13631 -8.81043 -8.39434 -8.05699 -7.54918 -6.28630 -4.32237 1.01820 1.18431 2.14751 2.58539 2.76476 2.98878 3.12597 3.20753 3.21478 3.46474 3.58561 3.75414 3.86927 4.18093 4.19167 4.48814 4.56648 4.83126 4.84265 4.98364 4.99604 5.06632 5.15757 5.27855 5.32892 5.38337 5.58429 5.75500 5.82732 5.99601 6.07402 6.13287 6.16808 6.26063 6.32806 6.34896 6.40735 6.49523 6.55405 6.70306 6.92782 7.25838 7.31019 7.49980 7.81055 8.11325 8.28396 8.51023 8.76823 9.26235 10.83825 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.025335 B = 0.002527 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.918987 B =11075.620824 C =11404.343755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.096 3.904 3 C -0.286 4.286 4 C 0.267 3.733 5 N -0.630 5.630 6 C 0.528 3.472 7 O -0.497 6.497 8 C -0.096 4.096 9 H 0.128 0.872 10 C 0.060 3.940 11 O -0.298 6.298 12 C 0.114 3.886 13 C -0.141 4.141 14 C -0.080 4.080 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.152 4.152 18 N -0.316 5.316 19 N -0.316 5.316 20 C 0.232 3.768 21 C -0.542 4.542 22 H 0.081 0.919 23 C 0.079 3.921 24 N -0.886 5.886 25 Si 0.873 3.127 26 H -0.270 1.270 27 H -0.279 1.279 28 H -0.263 1.263 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.160 0.840 33 H 0.410 0.590 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.890 21.249 8.152 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.035 4.035 3 C -0.317 4.317 4 C 0.014 3.986 5 N -0.278 5.278 6 C 0.312 3.688 7 O -0.368 6.368 8 C -0.118 4.118 9 H 0.146 0.854 10 C -0.015 4.015 11 O -0.212 6.212 12 C 0.069 3.931 13 C -0.160 4.160 14 C -0.098 4.098 15 C -0.169 4.169 16 C -0.067 4.067 17 C -0.153 4.153 18 N -0.146 5.146 19 N -0.098 5.098 20 C 0.113 3.887 21 C -0.580 4.580 22 H 0.099 0.901 23 C -0.125 4.125 24 N -0.523 5.523 25 Si 0.698 3.302 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.188 1.188 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.178 0.822 33 H 0.245 0.755 34 H 0.112 0.888 35 H 0.130 0.870 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.733 20.232 7.785 23.763 hybrid contribution -0.143 -0.544 0.670 0.875 sum 9.591 19.688 8.455 23.476 Atomic orbital electron populations 1.20414 0.87766 1.04269 1.02498 1.21064 0.94965 0.86917 1.00538 1.21258 0.89710 0.99862 1.20896 1.18947 0.87201 0.89516 1.02950 1.42417 1.07603 1.04892 1.72916 1.20097 0.90710 0.81257 0.76738 1.90679 1.26223 1.73661 1.46274 1.21522 0.95754 0.92313 1.02203 0.85379 1.23900 0.97877 0.93218 0.86520 1.86874 1.75391 1.26586 1.32306 1.19572 0.94786 0.88882 0.89865 1.20243 1.05302 0.89308 1.01133 1.20891 0.96876 0.99021 0.93044 1.21022 1.03256 0.96178 0.96463 1.20289 0.95171 0.92156 0.99065 1.20087 1.06766 0.93243 0.95182 1.77245 0.99496 1.08519 1.29389 1.48529 1.01207 1.07045 1.53004 1.20005 0.95309 0.73675 0.99742 1.21176 1.47471 0.99000 0.90393 0.90092 1.24810 0.94457 0.97427 0.95819 1.69875 1.45511 1.18070 1.18797 0.86905 0.79447 0.80979 0.82828 1.19584 1.20469 1.18803 0.91030 0.90330 0.89771 0.82225 0.75465 0.88798 0.86954 0.85357 0.85114 0.85378 0.85725 0.93183 0.93629 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.89 36.00 0.36 -1.17 16 2 C 0.10 1.99 6.92 -82.28 -0.57 1.42 16 3 C -0.29 -5.83 9.52 -39.83 -0.38 -6.21 16 4 C 0.27 5.28 8.11 -154.39 -1.25 4.03 16 5 N -0.63 -9.28 5.18 -11.13 -0.06 -9.34 16 6 C 0.53 7.48 7.12 -10.99 -0.08 7.40 16 7 O -0.50 -8.88 13.28 5.55 0.07 -8.80 16 8 C -0.10 -0.95 3.52 -91.56 -0.32 -1.28 16 9 H 0.13 0.83 8.14 -51.93 -0.42 0.40 16 10 C 0.06 0.53 7.53 38.06 0.29 0.82 16 11 O -0.30 -3.69 11.10 -20.15 -0.22 -3.92 16 12 C 0.11 1.38 7.04 -38.95 -0.27 1.10 16 13 C -0.14 -1.45 10.06 -39.30 -0.40 -1.85 16 14 C -0.08 -0.70 10.02 -39.68 -0.40 -1.09 16 15 C -0.15 -1.34 10.07 -39.52 -0.40 -1.73 16 16 C -0.05 -0.50 10.03 -39.72 -0.40 -0.90 16 17 C -0.15 -1.72 4.94 -104.10 -0.51 -2.24 16 18 N -0.32 -7.08 12.59 31.44 0.40 -6.68 16 19 N -0.32 -7.28 3.59 -58.33 -0.21 -7.49 16 20 C 0.23 5.53 4.88 -5.19 -0.03 5.51 16 21 C -0.54 -15.12 9.94 -34.44 -0.34 -15.46 16 22 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 23 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 24 N -0.89 -26.24 13.96 55.43 0.77 -25.46 16 25 Si 0.87 19.98 27.47 -169.99 -4.67 15.31 16 26 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.50 7.72 -51.93 -0.40 1.10 16 32 H 0.16 3.20 5.92 -52.49 -0.31 2.89 16 33 H 0.41 4.57 8.65 -40.82 -0.35 4.22 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.11 0.93 7.53 -51.93 -0.39 0.54 16 36 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 39 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 40 H 0.05 1.20 7.20 -51.93 -0.37 0.83 16 41 H 0.05 1.00 7.09 -51.93 -0.37 0.63 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 358.25 15.07 5.40 5.40 Total: -1.00 -35.66 358.25 -8.49 -44.15 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.17 Total: 6.37 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -4.80 Total: -9.54 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: 0.90 Total: -48.97 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.15 Total: -12.72 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.67 Total: 15.31 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.66 -8.49 -44.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271152345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.822 kcal (2) G-P(sol) polarization free energy of solvation -35.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds