Wall clock time and date at job start Tue Mar 31 2020 15:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35233 * 126.07133 * 2 1 4 4 C 1.40415 * 107.86897 * 180.02562 * 3 2 1 5 5 N 1.40159 * 125.97167 * 180.02562 * 4 3 2 6 6 C 1.34770 * 120.00186 * 0.02562 * 5 4 3 7 7 O 1.21293 * 120.00165 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00112 * 179.97438 * 6 5 4 9 9 H 1.09002 * 110.83443 * 297.73461 * 8 6 5 10 10 C 1.54708 * 110.94102 * 61.45137 * 8 6 5 11 11 O 1.43769 * 102.79275 * 92.79521 * 10 8 6 12 12 C 1.36128 * 109.28644 * 27.55279 * 11 10 8 13 13 C 1.39288 * 129.87652 * 161.44485 * 12 11 10 14 14 C 1.37929 * 120.24304 * 179.56047 * 13 12 11 15 15 C 1.38291 * 120.35164 * 0.02562 * 14 13 12 16 16 C 1.38349 * 119.76292 * 0.20649 * 15 14 13 17 17 C 1.37739 * 119.98087 * 359.96411 * 16 15 14 18 18 N 1.31215 * 108.04921 * 0.02562 * 4 3 2 19 19 N 1.34974 * 126.06806 * 180.02562 * 2 1 3 20 20 C 1.46506 * 125.97374 * 359.72146 * 19 2 1 21 21 C 1.50700 * 109.47258 * 89.99752 * 20 19 2 22 22 H 1.08001 * 119.99888 * 359.97438 * 21 20 19 23 23 C 1.37870 * 119.99592 * 179.97438 * 21 20 19 24 24 N 1.31521 * 119.99906 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00494 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47131 * 89.99644 * 25 23 21 27 27 H 1.48501 * 109.47380 * 210.00074 * 25 23 21 28 28 H 1.48508 * 109.46971 * 330.00113 * 25 23 21 29 29 H 1.09004 * 109.47457 * 269.97588 * 1 2 3 30 30 H 1.08998 * 109.47066 * 29.97734 * 1 2 3 31 31 H 1.09004 * 109.47571 * 149.97865 * 1 2 3 32 32 H 1.07997 * 126.06765 * 0.03628 * 3 2 1 33 33 H 0.97001 * 119.99524 * 179.97438 * 5 4 3 34 34 H 1.09005 * 110.75039 * 211.11873 * 10 8 6 35 35 H 1.09000 * 110.74955 * 334.46950 * 10 8 6 36 36 H 1.08004 * 119.87949 * 359.57489 * 13 12 11 37 37 H 1.08001 * 119.82676 * 180.02562 * 14 13 12 38 38 H 1.08003 * 120.11629 * 180.17299 * 15 14 13 39 39 H 1.08003 * 120.00804 * 179.97438 * 16 15 14 40 40 H 1.08995 * 109.46441 * 209.99792 * 20 19 2 41 41 H 1.08999 * 109.46814 * 329.99674 * 20 19 2 42 42 H 0.96998 * 120.00210 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6544 -0.0006 5 7 4.7735 1.4748 -0.0003 6 6 4.6367 2.8156 0.0012 7 8 3.5302 3.3124 0.0018 8 6 5.8586 3.6977 0.0021 9 1 6.4505 3.5392 0.9036 10 6 6.7111 3.4628 -1.2674 11 8 6.2114 4.4594 -2.1752 12 6 5.7267 5.5135 -1.4632 13 6 5.4687 6.8212 -1.8676 14 6 4.9630 7.7388 -0.9705 15 6 4.7081 7.3698 0.3376 16 6 4.9661 6.0742 0.7485 17 6 5.4744 5.1572 -0.1448 18 7 3.6336 -0.6577 -0.0015 19 7 2.3016 -1.0910 -0.0005 20 6 1.8499 -2.4847 0.0047 21 6 1.6894 -2.9660 -1.4144 22 1 1.9021 -2.3002 -2.2377 23 6 1.2710 -4.2562 -1.6614 24 7 1.1313 -4.6765 -2.8998 25 14 0.9037 -5.4080 -0.2374 26 1 -0.5257 -5.2821 0.1452 27 1 1.1852 -6.8073 -0.6471 28 1 1.7598 -5.0500 0.9222 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.9720 2.1210 0.0006 33 1 5.6584 1.0775 -0.0004 34 1 7.7683 3.6263 -1.0584 35 1 6.5452 2.4612 -1.6641 36 1 5.6651 7.1177 -2.8874 37 1 4.7651 8.7509 -1.2914 38 1 4.3095 8.0907 1.0361 39 1 4.7689 5.7818 1.7693 40 1 2.5866 -3.1034 0.5171 41 1 0.8933 -2.5546 0.5225 42 1 0.8373 -5.5844 -3.0737 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271152345.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:46 Heat of formation + Delta-G solvation = 26.843742 kcal Electronic energy + Delta-G solvation = -26757.026935 eV Core-core repulsion = 22896.816242 eV Total energy + Delta-G solvation = -3860.210693 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.71452 -42.13987 -40.25557 -38.34873 -36.42513 -35.29628 -34.07752 -33.09556 -32.84210 -31.04224 -30.37860 -28.98846 -27.93921 -25.73546 -24.53883 -23.72527 -23.13158 -22.18303 -21.33543 -20.73528 -19.25021 -18.70540 -18.00371 -17.85249 -17.53816 -17.23044 -16.86135 -16.47192 -16.38655 -16.05148 -15.41237 -15.28287 -14.96592 -14.79654 -14.48244 -14.40511 -14.01390 -13.92603 -13.77585 -13.70343 -13.53653 -13.31219 -12.92028 -12.77758 -12.65416 -12.56367 -12.30487 -12.14636 -11.85541 -11.77494 -11.61737 -11.47323 -10.98197 -10.90547 -9.88369 -9.65103 -9.17448 -9.15884 -8.41832 -6.53577 0.26431 0.43646 0.80091 1.22168 1.31904 1.34492 1.39632 1.47902 2.06284 2.22002 2.25809 2.28929 2.79636 2.90459 3.07062 3.44429 3.54184 3.82184 3.86738 4.04883 4.16832 4.23438 4.35497 4.38164 4.43250 4.52347 4.52520 4.59566 4.68228 4.70662 4.73739 4.81284 4.93131 5.05585 5.07107 5.18849 5.21466 5.36515 5.44719 5.56194 5.66272 5.81532 5.95868 6.13721 6.22041 6.33540 6.50311 6.87021 7.01512 7.10608 8.74943 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.025335 B = 0.002527 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.918987 B =11075.620824 C =11404.343755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.091 3.909 3 C -0.301 4.301 4 C 0.274 3.726 5 N -0.621 5.621 6 C 0.527 3.473 7 O -0.535 6.535 8 C -0.084 4.084 9 H 0.169 0.831 10 C 0.057 3.943 11 O -0.325 6.325 12 C 0.087 3.913 13 C -0.157 4.157 14 C -0.079 4.079 15 C -0.152 4.152 16 C -0.062 4.062 17 C -0.170 4.170 18 N -0.351 5.351 19 N -0.342 5.342 20 C 0.242 3.758 21 C -0.552 4.552 22 H 0.022 0.978 23 C 0.021 3.979 24 N -0.938 5.938 25 Si 0.952 3.048 26 H -0.250 1.250 27 H -0.278 1.278 28 H -0.243 1.243 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.163 0.837 33 H 0.427 0.573 34 H 0.132 0.868 35 H 0.113 0.887 36 H 0.137 0.863 37 H 0.160 0.840 38 H 0.154 0.846 39 H 0.136 0.864 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.174 22.280 10.691 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.331 4.331 4 C 0.020 3.980 5 N -0.271 5.271 6 C 0.314 3.686 7 O -0.409 6.409 8 C -0.105 4.105 9 H 0.186 0.814 10 C -0.017 4.017 11 O -0.240 6.240 12 C 0.042 3.958 13 C -0.175 4.175 14 C -0.096 4.096 15 C -0.170 4.170 16 C -0.080 4.080 17 C -0.171 4.171 18 N -0.181 5.181 19 N -0.124 5.124 20 C 0.122 3.878 21 C -0.590 4.590 22 H 0.040 0.960 23 C -0.179 4.179 24 N -0.576 5.576 25 Si 0.772 3.228 26 H -0.174 1.174 27 H -0.203 1.203 28 H -0.167 1.167 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.180 0.820 33 H 0.265 0.735 34 H 0.150 0.850 35 H 0.131 0.869 36 H 0.155 0.845 37 H 0.178 0.822 38 H 0.172 0.828 39 H 0.153 0.847 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.055 21.295 10.330 25.715 hybrid contribution -0.195 -0.661 -0.228 0.725 sum 9.859 20.634 10.102 25.001 Atomic orbital electron populations 1.20551 0.85184 1.04395 1.04575 1.21745 0.96736 0.86359 0.99028 1.21425 0.90211 0.99893 1.21612 1.19307 0.88779 0.89251 1.00691 1.42549 1.07101 1.04868 1.72574 1.21002 0.91745 0.80925 0.74902 1.90649 1.28238 1.74196 1.47838 1.21584 0.93926 0.90514 1.04522 0.81405 1.24181 0.99547 0.92652 0.85357 1.86821 1.75941 1.27394 1.33843 1.19916 0.95999 0.89488 0.90413 1.20589 1.05552 0.89300 1.02101 1.21284 0.95563 1.00040 0.92752 1.21415 1.02320 0.96219 0.97063 1.20600 0.95111 0.92726 0.99593 1.20313 1.07600 0.93954 0.95259 1.77162 0.99739 1.09814 1.31420 1.48455 1.01873 1.07089 1.54991 1.19788 0.96489 0.74499 0.97017 1.21248 1.47871 0.98734 0.91161 0.95953 1.25852 0.93661 0.99194 0.99142 1.70040 1.46812 1.18949 1.21801 0.85667 0.80528 0.77650 0.78917 1.17418 1.20336 1.16669 0.87843 0.88517 0.91241 0.81982 0.73455 0.85042 0.86901 0.84526 0.82196 0.82794 0.84654 0.93081 0.90948 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.88 9.89 71.23 0.70 -2.18 16 2 C 0.09 3.78 6.92 41.38 0.29 4.07 16 3 C -0.30 -12.32 9.52 22.11 0.21 -12.11 16 4 C 0.27 10.93 8.11 133.33 1.08 12.01 16 5 N -0.62 -17.94 5.18 -307.51 -1.59 -19.53 16 6 C 0.53 14.57 7.12 87.66 0.62 15.19 16 7 O -0.54 -19.10 13.28 -3.07 -0.04 -19.15 16 8 C -0.08 -1.53 3.52 -11.40 -0.04 -1.57 16 9 H 0.17 1.63 8.14 -2.39 -0.02 1.61 16 10 C 0.06 0.92 7.53 72.56 0.55 1.47 16 11 O -0.33 -7.98 11.10 -95.01 -1.05 -9.04 16 12 C 0.09 2.05 7.04 22.68 0.16 2.21 16 13 C -0.16 -3.11 10.06 22.45 0.23 -2.89 16 14 C -0.08 -1.21 10.02 22.21 0.22 -0.99 16 15 C -0.15 -2.37 10.07 22.31 0.22 -2.15 16 16 C -0.06 -1.18 10.03 22.18 0.22 -0.95 16 17 C -0.17 -3.67 4.94 -19.53 -0.10 -3.76 16 18 N -0.35 -15.96 12.59 -54.45 -0.69 -16.64 16 19 N -0.34 -15.92 3.59 -338.44 -1.22 -17.14 16 20 C 0.24 11.51 4.88 85.63 0.42 11.93 16 21 C -0.55 -31.79 9.94 25.60 0.25 -31.53 16 22 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 23 C 0.02 1.19 5.47 84.65 0.46 1.66 16 24 N -0.94 -57.23 13.96 21.45 0.30 -56.93 16 25 Si 0.95 40.61 27.47 68.60 1.88 42.50 16 26 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 27 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 28 H -0.24 -9.55 6.54 99.48 0.65 -8.90 16 29 H 0.10 2.68 8.14 -2.38 -0.02 2.66 16 30 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.07 2.46 7.72 -2.38 -0.02 2.44 16 32 H 0.16 6.55 5.92 -2.91 -0.02 6.53 16 33 H 0.43 9.10 8.65 -92.71 -0.80 8.30 16 34 H 0.13 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.11 1.75 7.53 -2.39 -0.02 1.73 16 36 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 39 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.05 2.40 7.20 -2.39 -0.02 2.39 16 41 H 0.07 3.04 7.09 -2.39 -0.02 3.02 16 42 H 0.27 15.37 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -82.07 358.25 3.31 -78.76 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.21 Total: 26.75 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 5.51 Total: -9.59 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -3.20 Total: -110.24 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -1.10 Total: -28.18 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 1.88 Total: 42.50 kcal Total: -82.07 3.31 -78.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271152345.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.605 kcal (2) G-P(sol) polarization free energy of solvation -82.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds