Wall clock time and date at job start Tue Mar 31 2020 15:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35237 * 126.06796 * 2 1 4 4 C 1.40405 * 107.86573 * 179.97438 * 3 2 1 5 5 N 1.40159 * 125.97113 * 180.02562 * 4 3 2 6 6 C 1.34778 * 120.00398 * 359.97438 * 5 4 3 7 7 O 1.21292 * 119.99343 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00293 * 179.97438 * 6 5 4 9 9 H 1.08999 * 110.66766 * 301.78981 * 8 6 5 10 10 C 1.54706 * 110.74682 * 65.00371 * 8 6 5 11 11 C 1.51642 * 101.93056 * 143.60597 * 10 8 6 12 12 C 1.37739 * 132.18204 * 164.59943 * 11 10 8 13 13 C 1.38349 * 119.97746 * 180.40271 * 12 11 10 14 14 C 1.38278 * 119.77305 * 359.94096 * 13 12 11 15 15 C 1.37940 * 120.34809 * 359.88040 * 14 13 12 16 16 C 1.38889 * 107.03667 * 344.62125 * 11 10 8 17 17 O 1.36133 * 111.23386 * 358.92085 * 16 11 10 18 18 N 1.31220 * 108.05629 * 359.97438 * 4 3 2 19 19 N 1.34964 * 126.06704 * 179.68176 * 2 1 3 20 20 C 1.46497 * 125.98067 * 0.03694 * 19 2 1 21 21 C 1.50705 * 109.46928 * 89.99752 * 20 19 2 22 22 H 1.07999 * 119.99891 * 0.02562 * 21 20 19 23 23 C 1.37881 * 119.99719 * 180.02562 * 21 20 19 24 24 N 1.31511 * 120.00054 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99593 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47486 * 60.00208 * 25 23 21 27 27 H 1.48502 * 109.47006 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47169 * 299.99905 * 25 23 21 29 29 H 1.09001 * 109.46953 * 90.02780 * 1 2 3 30 30 H 1.09000 * 109.47318 * 210.02378 * 1 2 3 31 31 H 1.09000 * 109.47161 * 330.03008 * 1 2 3 32 32 H 1.08003 * 126.06505 * 359.95231 * 3 2 1 33 33 H 0.97000 * 119.99746 * 179.97438 * 5 4 3 34 34 H 1.09001 * 110.93948 * 261.76681 * 10 8 6 35 35 H 1.09006 * 110.94406 * 25.44260 * 10 8 6 36 36 H 1.07999 * 120.01075 * 0.35064 * 12 11 10 37 37 H 1.08004 * 120.11206 * 179.97438 * 13 12 11 38 38 H 1.08006 * 119.83078 * 179.85848 * 14 13 12 39 39 H 1.08003 * 119.87856 * 179.97438 * 15 14 13 40 40 H 1.08997 * 109.47454 * 209.99968 * 20 19 2 41 41 H 1.09004 * 109.46663 * 330.00121 * 20 19 2 42 42 H 0.96999 * 119.99863 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6546 0.0006 5 7 4.7734 1.4750 0.0013 6 6 4.6367 2.8158 0.0009 7 8 3.5301 3.3124 0.0005 8 6 5.8586 3.6979 0.0023 9 1 6.4839 3.4876 0.8699 10 6 6.6623 3.5227 -1.3080 11 6 7.1591 4.9328 -1.5618 12 6 8.1399 5.4329 -2.3895 13 6 8.3943 6.7926 -2.4169 14 6 7.6604 7.6448 -1.6125 15 6 6.6751 7.1466 -0.7855 16 6 6.4108 5.7794 -0.7542 17 8 5.4850 5.0856 -0.0367 18 7 3.6337 -0.6576 0.0015 19 7 2.3016 -1.0909 0.0061 20 6 1.8501 -2.4846 0.0130 21 6 1.6960 -2.9697 -1.4054 22 1 1.9131 -2.3064 -2.2296 23 6 1.2777 -4.2605 -1.6509 24 7 1.0129 -5.0680 -0.6473 25 14 1.0874 -4.8620 -3.4091 26 1 2.3942 -4.7693 -4.1083 27 1 0.6284 -6.2743 -3.4020 28 1 0.0876 -4.0206 -4.1146 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3633 0.8903 0.5134 32 1 1.9719 2.1211 -0.0007 33 1 5.6584 1.0777 0.0021 34 1 7.4964 2.8358 -1.1645 35 1 6.0168 3.1852 -2.1189 36 1 8.7107 4.7638 -3.0163 37 1 9.1632 7.1870 -3.0648 38 1 7.8597 8.7061 -1.6315 39 1 6.1068 7.8190 -0.1601 40 1 2.5844 -3.1019 0.5304 41 1 0.8912 -2.5531 0.5267 42 1 0.7183 -5.9759 -0.8200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271164276.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:39 Heat of formation + Delta-G solvation = 44.664406 kcal Electronic energy + Delta-G solvation = -26278.848830 eV Core-core repulsion = 22419.410898 eV Total energy + Delta-G solvation = -3859.437931 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.72361 -40.69706 -39.21563 -37.56214 -34.98879 -33.54873 -33.03311 -31.54734 -30.96325 -30.37856 -29.80675 -26.77967 -26.39957 -25.01103 -23.09591 -22.63189 -22.00809 -21.40939 -19.91000 -19.36458 -17.91327 -17.16877 -17.13903 -16.72216 -16.37793 -16.07532 -15.41547 -15.09202 -14.94833 -14.47991 -14.31155 -14.07682 -13.77860 -13.59155 -13.41702 -13.26876 -13.02402 -12.51498 -12.42641 -12.32106 -12.18001 -12.07479 -11.74873 -11.47720 -11.43174 -11.14829 -11.13793 -10.83818 -10.54053 -10.27403 -10.01110 -9.66456 -9.59909 -9.24260 -8.66643 -8.48113 -8.01536 -7.53861 -6.28272 -4.36018 0.93235 1.04219 2.09835 2.22763 2.80692 3.10318 3.21391 3.25379 3.29276 3.38004 3.60076 3.70523 3.98992 4.15063 4.28129 4.44484 4.52406 4.64104 4.73297 4.88424 5.05028 5.05565 5.19102 5.30043 5.34901 5.38595 5.64215 5.67113 5.85837 5.96637 6.05006 6.08391 6.13215 6.15038 6.22579 6.39726 6.46568 6.63088 6.83428 6.88557 7.01437 7.32690 7.54265 7.63854 7.85401 7.99045 8.06963 8.57424 8.70904 9.30308 10.79065 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.021775 B = 0.002313 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.598525 B =12100.876216 C =12796.485495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.093 3.907 3 C -0.291 4.291 4 C 0.263 3.737 5 N -0.624 5.624 6 C 0.522 3.478 7 O -0.490 6.490 8 C 0.072 3.928 9 H 0.119 0.881 10 C -0.102 4.102 11 C -0.173 4.173 12 C -0.067 4.067 13 C -0.150 4.150 14 C -0.085 4.085 15 C -0.135 4.135 16 C 0.107 3.893 17 O -0.272 6.272 18 N -0.317 5.317 19 N -0.315 5.315 20 C 0.258 3.742 21 C -0.537 4.537 22 H 0.064 0.936 23 C 0.066 3.934 24 N -0.891 5.891 25 Si 0.907 3.093 26 H -0.275 1.275 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.159 0.841 33 H 0.412 0.588 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.285 20.695 -0.008 24.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.038 4.038 3 C -0.321 4.321 4 C 0.010 3.990 5 N -0.273 5.273 6 C 0.306 3.694 7 O -0.361 6.361 8 C 0.011 3.989 9 H 0.137 0.863 10 C -0.139 4.139 11 C -0.173 4.173 12 C -0.085 4.085 13 C -0.168 4.168 14 C -0.103 4.103 15 C -0.154 4.154 16 C 0.062 3.938 17 O -0.184 6.184 18 N -0.148 5.148 19 N -0.097 5.097 20 C 0.141 3.859 21 C -0.576 4.576 22 H 0.082 0.918 23 C -0.138 4.138 24 N -0.529 5.529 25 Si 0.734 3.266 26 H -0.200 1.200 27 H -0.209 1.209 28 H -0.199 1.199 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.177 0.823 33 H 0.247 0.753 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.885 19.780 0.176 23.607 hybrid contribution 0.039 -0.179 -0.996 1.013 sum 12.924 19.601 -0.821 23.492 Atomic orbital electron populations 1.20348 0.87761 1.02915 1.03260 1.21074 0.94990 0.87083 1.00661 1.21246 0.89701 0.99867 1.21333 1.18889 0.86895 0.89565 1.03617 1.42191 1.07919 1.04424 1.72770 1.19897 0.90352 0.81655 0.77537 1.90712 1.25960 1.73583 1.45808 1.23062 0.93827 0.81345 1.00621 0.86343 1.21800 1.00265 0.95300 0.96579 1.20697 1.00644 0.95010 1.00995 1.20326 0.95755 0.95488 0.96968 1.21053 1.01541 0.92954 1.01242 1.20900 0.94471 0.99998 0.94904 1.20283 1.00649 0.91499 1.02979 1.19630 0.89158 0.93287 0.91761 1.86956 1.43783 1.17754 1.69924 1.77262 1.00048 1.08267 1.29186 1.49019 1.00892 1.07857 1.51941 1.19712 0.96030 0.71189 0.98996 1.21269 1.47001 0.97958 0.91323 0.91816 1.24925 0.94635 0.96080 0.98122 1.69906 1.44728 1.07316 1.30966 0.86406 0.78809 0.77719 0.83698 1.19990 1.20933 1.19924 0.90348 0.90772 0.90743 0.82346 0.75290 0.87652 0.88188 0.85540 0.85380 0.85045 0.85197 0.92941 0.92708 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.11 36.01 0.36 -1.08 16 2 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 3 C -0.29 -5.94 9.52 -39.84 -0.38 -6.32 16 4 C 0.26 5.21 8.11 -154.39 -1.25 3.95 16 5 N -0.62 -9.16 5.44 -11.13 -0.06 -9.22 16 6 C 0.52 7.55 7.10 -10.99 -0.08 7.47 16 7 O -0.49 -9.07 13.70 -13.51 -0.19 -9.25 16 8 C 0.07 0.76 4.05 -26.99 -0.11 0.66 16 9 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 10 C -0.10 -0.90 6.63 -26.52 -0.18 -1.07 16 11 C -0.17 -1.68 6.27 -104.10 -0.65 -2.34 16 12 C -0.07 -0.54 10.03 -39.72 -0.40 -0.94 16 13 C -0.15 -1.07 10.07 -39.53 -0.40 -1.47 16 14 C -0.08 -0.62 10.02 -39.68 -0.40 -1.02 16 15 C -0.14 -1.27 10.06 -39.30 -0.40 -1.66 16 16 C 0.11 1.21 7.04 -38.95 -0.27 0.93 16 17 O -0.27 -3.59 10.39 -39.22 -0.41 -4.00 16 18 N -0.32 -7.14 12.59 31.44 0.40 -6.74 16 19 N -0.31 -7.36 3.59 -58.33 -0.21 -7.57 16 20 C 0.26 6.54 5.99 -5.19 -0.03 6.51 16 21 C -0.54 -14.63 9.39 -34.44 -0.32 -14.96 16 22 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 23 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -24.81 13.29 55.43 0.74 -24.07 16 25 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.26 7.06 -51.93 -0.37 0.90 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.16 3.19 5.92 -52.48 -0.31 2.88 16 33 H 0.41 4.55 8.82 -40.82 -0.36 4.19 16 34 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.97 7.92 -51.93 -0.41 0.56 16 36 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 38 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 39 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 40 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.06 1.37 7.03 -51.93 -0.37 1.01 16 42 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 362.43 15.07 5.46 5.46 Total: -1.00 -33.77 362.43 -9.62 -43.39 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.16 Total: 4.36 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -5.17 Total: -8.26 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: 0.86 Total: -47.61 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.59 Total: -13.25 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.77 -9.62 -43.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271164276.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.050 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds